J. Vilkki

发表

Genetic diversity and genomic signatures of selection among cattle breeds from Siberia, eastern and northern Europe.

T. Iso-Touru, M. Tapio, J. Vilkki, 2016, Animal genetics.

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

Hans H. Cheng, S. Foissac, C. Elsik, 2015, Genome Biology.

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions

E. Halperin, P. Taberlet, J. Williams, 2019, Science Advances.

Simultaneous mining of linkage and linkage disequilibrium to fine map quantitative trait loci in outbred half-sib pedigrees: revisiting the location of a quantitative trait locus with major effect on milk production on bovine chromosome 14.

M. Mni, M. Georges, B. Grisart, 2002, Genetics.

A region on chicken chromosome 2 affects both egg white thinning and egg weight

D. de Koning, J. Vilkki, A. Virta, 2005, Genetics Selection Evolution.

Random amplified polymorphic DNA in cattle and sheep: application for detecting genetic variation.

J. Vilkki, J. Kantanen, K. Elo, 2009, Animal genetics.

Diet-induced milk fat depression is associated with alterations in ruminal biohydrogenation pathways and formation of novel fatty acid intermediates in lactating cows

J. Vilkki, K. Shingfield, T. Stefański, 2017, British Journal of Nutrition.

A medium-density genetic linkage map of the bovine genome

D. I. Våge, S. Ennis, M. Georges, 1997, Mammalian Genome.

Marker-assisted breeding value estimation for mastitis resistance in Finnish Ayrshire cattle.

R. Veerkamp, M. Lidauer, J. Vilkki, 2011, Journal of dairy science.

Effects of Bos taurus autosome 9-located quantitative trait loci haplotypes on the disease phenotypes of dairy cows with experimentally induced Escherichia coli mastitis.

M. Lund, J. Vilkki, G. Sahana, 2013, Journal of dairy science.

Quantitative trait loci affecting clinical mastitis and somatic cell count in dairy cattle

D. I. Våge, S. Lien, I. Olsaker, 2001, Mammalian Genome.

Joint analysis of quantitative trait loci for clinical mastitis and somatic cell score on five chromosomes in three Nordic dairy cattle breeds.

M. Lund, B. Thomsen, J. Williams, 2007, Journal of dairy science.

QTL for health traits in Finnish Ayrshire cattle

J. Vilkki, D. D. Koning, K. Elo, 2002 .

Effect of DNA extraction and sample preservation method on rumen bacterial population.

P. Taberlet, K. Fliegerová, F. Boyer, 2014, Anaerobe.

Mapping of fertility traits in Finnish Ayrshire by genome-wide association analysis.

M. Lund, R. Schnabel, T. Iso-Touru, 2011, Animal genetics.

First-generation linkage map for the common frog Rana temporaria reveals sex-linkage group

J. Vilkki, A. Laurila, J. Merilä, 2011, Heredity.

Infertile boars with knobbed and immotile short-tail sperm defects in the Finnish Yorkshire breed.

J. Taponen, A. Sukura, J. Vilkki, 2008, Reproduction in domestic animals = Zuchthygiene.

A 660-Kb Deletion with Antagonistic Effects on Fertility and Milk Production Segregates at High Frequency in Nordic Red Cattle: Additional Evidence for the Common Occurrence of Balancing Selection in Livestock

B. Guldbrandtsen, M. Lund, M. Georges, 2014, PLoS genetics.

Long-term effects of early-life rumen microbiota modulation on dairy cow production performance and methane emissions

M. Tapio, J. Vilkki, I. Tapio, 2022, Frontiers in Microbiology.

QTL Analysis of Behavior in Nine-Spined Sticklebacks (Pungitius pungitius)

J. Vilkki, J. Merilä, G. Herczeg, 2014, Behavior genetics.

Plant oil supplements reduce methane emissions and improve milk fatty acid composition in dairy cows fed grass silage-based diets without affecting milk yield.

J. Vilkki, I. Tapio, A. Bayat, 2018, Journal of dairy science.

Dietary forage to concentrate ratio and sunflower oil supplement alter rumen fermentation, ruminal methane emissions, and nutrient utilization in lactating cows1

J. Vilkki, I. Tapio, K. Shingfield, 2017, Translational animal science.

QTL for egg quality.

J. Vilkki, 2009 .

Application of genomic approaches in egg quality research

J. Vilkki, 2007 .

Estimation of breed contributions to present and future genetic diversity of 44 North Eurasian cattle breeds using core set diversity measures

J. Vilkki, I. Ammosov, Z. Ivanova, 2006, Genetics Selection Evolution.

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

Robert D Schnabel, Tad S Sonstegard, Rudiger Brauning, 2009, Proceedings of the National Academy of Sciences.

Genetic diversity and population structure of 20 North European cattle breeds.

S. Adalsteinsson, S. Lien, I. Olsaker, 2000, The Journal of heredity.

Comparison of microsatellite and blood protein diversity in sheep: inconsistencies in fragmented breeds

M. Tapio, J. Vilkki, J. Kantanen, 2003, Molecular ecology.

Maternal and paternal genealogy of Eurasian taurine cattle (Bos taurus)

S. Thessler, D. Bradley, J. Vilkki, 2009, Heredity.

The genetic structure of cattle populations (Bos taurus) in northern Eurasia and the neighbouring Near Eastern regions: implications for breeding strategies and conservation

J. Vilkki, I. Ammosov, Z. Ivanova, 2007, Molecular ecology.

Genetic Contribution of Indigenous Yakutian Cattle to Two Hybrid Populations, Revealed by Microsatellite Variation

J. Vilkki, I. Ammosov, Z. Ivanova, 2005 .

Mapping of QTL affecting incidence of blood and meat inclusions in egg layers

J. Vilkki, P. Uimari, J. Arango, 2011, BMC Genetics.

Effects of Starch Level and a Mixture of Sunflower and Fish Oils on Nutrient Intake and Digestibility, Rumen Fermentation, and Ruminal Methane Emissions in Dairy Cows

J. Vilkki, I. Tapio, K. Shingfield, 2021, Animals : an open access journal from MDPI.

Validated quantitative trait loci for eggshell quality in experimental and commercial laying hens.

D. de Koning, J. Vilkki, I. Dunn, 2018, Animal genetics.

Validated QTL for egg shell quality in experimental and commercial laying hens

J. Vilkki, J. Arango, D. Dekoning, 2018 .

Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community

P. Taberlet, J. Vilkki, A. Bonin, 2016, PloS one.

Fresh Rumen Liquid Inoculant Enhances the Rumen Microbial Community Establishment in Pre-weaned Dairy Calves

J. Vilkki, M. Popova, I. Tapio, 2022, Frontiers in Microbiology.

The effect of dietary forage to concentrate ratio and forage type on milk fatty acid composition and milk fat globule size of lactating cows.

J. Vilkki, K. Shingfield, A. Bayat, 2019, Journal of dairy science.

Dietary supplement of conjugated linoleic acids or polyunsaturated fatty acids suppressed the mobilization of body fat reserves in dairy cows at early lactation through different pathways.

J. Vilkki, Mervi Mutikainen, E. Trevisi, 2018, Journal of dairy science.

Effect of polymorphisms in candidate genes on reproduction traits in Finnish pig populations.

M. Rothschild, J. Vilkki, P. Uimari, 2010, Journal of animal science.

Parent-of-origin specific QTL – a possibility towards understanding reciprocal effects in chicken and the origin of imprinting

J. Vilkki, M. Tuiskula-Haavisto, Johanna Vilkki, 2007, Cytogenetic and Genome Research.

Quantitative Trait Loci and Single Nucleotide Polymorphism

J. Vilkki, M. Tuiskula-Haavisto, 2007 .

Transplantation of normal boar testicular cells resulted in complete focal spermatogenesis in a boar affected by the immotile short-tail sperm defect.

J. Taponen, A. Sukura, T. Katila, 2006, Reproduction in domestic animals = Zuchthygiene.

Knobbed acrosome defect is associated with a region containing the genes STK17b and HECW2 on porcine chromosome 15

J. Vilkki, P. Uimari, S. Nagy, 2010, BMC Genomics.

Quantitative trait loci with parent-of-origin effects in chicken.

Mervi Honkatukia, D. de Koning, J. Vilkki, 2004, Genetical research.

Mapping of quantitative trait loci affecting quality and production traits in egg layers.

D. de Koning, J. Vilkki, D. D. Koning, 2002, Poultry science.

Molecular dissection of a quantitative trait locus: a phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition.

Michel Georges, Anne Schmidt-Küntzel, Frédéric Farnir, 2002, Genetics.

Infertile Finnish Yorkshire boars carry a full-length LINE-1 retrotransposon within the KPL2 gene

C. Bendixen, B. Thomsen, J. Vilkki, 2007, Molecular Genetics and Genomics.

The Role of the Bovine Growth Hormone Receptor and Prolactin Receptor Genes in Milk, Fat and Protein Production in Finnish Ayrshire Dairy Cattle

M. Georges, M. Lidauer, J. Vilkki, 2006, Genetics.

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

R. Veerkamp, B. Guldbrandtsen, M. Lund, 2018, Nature Genetics.

QTL mapping of egg albumen quality in egg layers

J. Vilkki, J. Arango, R. Preisinger, 2013, Genetics Selection Evolution.

Genome-wide mapping of large deletions and their population-genetic properties in dairy cattle

B. Guldbrandtsen, M. Lund, D. Boichard, 2017, DNA research : an international journal for rapid publication of reports on genes and genomes.

A 0.5-Mbp deletion on bovine chromosome 23 is a strong candidate for stillbirth in Nordic Red cattle

B. Guldbrandtsen, M. Lund, D. de Koning, 2016, Genetics Selection Evolution.

An exonic insertion within Tex14 gene causes spermatogenic arrest in pigs

J. Vilkki, P. Uimari, Heli Venhoranta, 2011, BMC Genomics.

L1 insertion within SPEF2 gene is associated with increased litter size in the Finnish Yorkshire population.

T. Iso-Touru, J. Vilkki, P. Uimari, 2012, Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie.

Expression of SPEF2 During Mouse Spermatogenesis and Identification of IFT20 as an Interacting Protein1

J. Toppari, B. Thomsen, J. Vilkki, 2010, Biology of reproduction.

An intronic insertion in KPL2 results in aberrant splicing and causes the immotile short-tail sperm defect in the pig.

Virpi Ahola, Anu Sironen, Bo Thomsen, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Mapping of an immotile short tail sperm defect in the Finnish Yorkshire on porcine Chromosome 16

J. Vilkki, P. Uimari, A. Sironen, 2001, Mammalian Genome.

Quantitative trait loci for fertility traits in Finnish Ayrshire cattle

M. Lund, J. Vilkki, G. Sahana, 2008, Genetics Selection Evolution.

Quantitative trait Loci for health traits in Finnish Ayrshire cattle.

D. de Koning, J. Vilkki, A. Mäki-Tanila, 2004, Journal of dairy science.

A quantitative trait locus for live weight maps to bovine Chromosome 23

D. de Koning, J. Vilkki, K. Elo, 1999, Mammalian Genome.

Divergent evolution in the cytoplasmic domains of PRLR and GHR genes in Artiodactyla

T. Iso-Touru, J. Vilkki, J. Kantanen, 2009, BMC Evolutionary Biology.

A recent L1 insertion within SPEF2 gene is associated with changes in PRLR expression in sow reproductive organs.

A. Gyenesei, J. Vilkki, A. Laiho, 2014, Animal genetics.

Evaluation of genetic variability and genetic distances between eight chicken lines using microsatellite markers.

J. Vilkki, T. Vanhala, K. Elo, 1998, Poultry science.

Quantitative trait loci affecting milk production traits in Finnish Ayrshire dairy cattle.

D. de Koning, J. Vilkki, K. Elo, 2003, Journal of dairy science.

Casein haplotypes and their association with milk production traits in the Finnish Ayrshire cattle.

J. Vilkki, K. Elo, A. Mäki-Tanila, 2009, Animal genetics.

Ruminal Infusions of Cobalt EDTA Modify Milk Fatty Acid Composition via Decreases in Fatty Acid Desaturation and Altered Gene Expression in the Mammary Gland of Lactating Cows.

J. Taponen, J. Vilkki, I. Tapio, 2016, The Journal of nutrition.

Prioritization for Conservation of Northern European Cattle Breeds Based on Analysis of Microsatellite Data

I. Olsaker, J. Vilkki, J. Kantanen, 2006, Conservation biology : the journal of the Society for Conservation Biology.

Molecular anatomy of the cytoplasmic domain of bovine growth hormone receptor, a quantitative trait locus

T. Iso-Touru, J. Vilkki, J. Kantanen, 2008, Proceedings of the Royal Society B: Biological Sciences.

Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

B. Guldbrandtsen, T. Iso-Touru, J. Vilkki, 2016, BMC Genetics.

Sheep and cattle population dynamics based on ancient and modern DNA reflects key events in the human history of the North-East Baltic Sea Region

A. Sajantila, J. Vilkki, V. Ahola, 2018 .

Fine-mapping QTL for mastitis resistance on BTA9 in three Nordic red cattle breeds

M. Lund, P. Sørensen, B. Thomsen, 2008, Animal genetics.

Fishy taint in chicken eggs is associated with a substitution within a conserved motif of the FMO3 gene.

J. Vilkki, S. Weigend, R. Preisinger, 2005, Genomics.

Genomic prediction from whole genome sequence in livestock: the 1000 Bull Genomes Project

R. Veerkamp, B. Hayes, C. Tassell, 2014 .

Genetic Architecture of Parallel Pelvic Reduction in Ninespine Sticklebacks

J. Vilkki, J. Merilä, G. Herczeg, 2013, G3: Genes, Genomes, Genetics.

Quantitative trait loci for growth and body size in the nine‐spined stickleback Pungitius pungitius L.

J. Vilkki, J. Merilä, G. Herczeg, 2013, Molecular ecology.

Temporal variation in coat colour (genotypes) supports major changes in the Nordic cattle population after Iron Age.

A. Sajantila, J. Vilkki, M. Niemi, 2016, Animal genetics.

Fine mapping of quantitative trait loci for mastitis resistance on bovine chromosome 11.

M. Lund, T. Iso-Touru, J. Vilkki, 2009, Animal genetics.

Sex determination of bovine embryo blastomeres by fluorogenic probes.

J. Vilkki, J. Peippo, M. Markkula, 2002, Theriogenology.

Birth of correctly genotyped calves after multiplex marker detection from bovine embryo microblade biopsies

J. Vilkki, J. Peippo, Johanna Aro, 2007, Molecular reproduction and development.

Finnish bioeconomy on the global product market in 2035

A. Asikainen, L. Tyrväinen, K. Oksman-Caldentey, 2021 .

A 0.5-Mbp deletion on bovine chromosome 23 is a strong candidate for stillbirth in Nordic Red cattle

B. Guldbrandtsen, M. Lund, D. de Koning, 2016, Genetics Selection Evolution.

Mapping of multiple quantitative trait loci by simple regression in half-sib designs.

D. de Koning, J. Vilkki, K. Elo, 2001, Journal of animal science.

A genome scan for milk production QTL in Finnish Ayrshire cattle

J. Vilkki, D. D. Koning, K. Elo, 2000 .

Subgroup detection in genotype data using invariant coordinate selection

Klaus Nordhausen, Maria Tuiskula-Haavisto, David Cavero, 2017, BMC Bioinformatics.

QTL mapping of egg albumen quality in egg layers

J. Vilkki, J. Arango, R. Preisinger, 2013, Genetics Selection Evolution.

Meta-analysis of GWAS of bovine stature with >50,000 animals imputed to whole-genome sequence

P. Ma, R. Veerkamp, B. Guldbrandtsen, 2015 .

Comparison of different DNA extraction methods from hair root follicles to genotype Finnish Landrace boars with the Illumina PorcineSNP60 BeadChip

J. Vilkki, P. Uimari, A. Sironen, 2008 .

686. Genomewide transcriptome profiling of milk derived primary bovine mammary epithelial cells after pathogen challenge

T. Iso-Touru, J. Vilkki, A. Virta, 2022, Proceeding of 12th World Congress on Genetics Applied to Livestock Production (WCGALP).

Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows

M. Tapio, J. Vilkki, I. Tapio, 2017, PloS one.

to accelerate genome-to-phenome with the Functional Annotation of Genomes project.

D. Burt, S. Foissac, C. Elsik, 2015 .