P. Swoboda

发表

Cis- and Trans-Regulatory Mechanisms of Gene Expression in the ASJ Sensory Neuron of Caenorhabditis elegans

S. Chávez, María González-Barrios, J. C. Fierro-González, 2015, Genetics.

Comparative Functional Genomics of the Fission Yeasts

Manolis Kellis, Nir Friedman, Hanah Margalit, 2011, Science.

Counselling Prior to Blood-Borne Virus Screening in Haemodialysis Patients: A Survey of Patient Experience and Opinion

P. Swoboda, S. Bhandari, A. Modi, 2009, Nephron Clinical Practice.

The critical implicit tax rate and capital structure

J. Zechner, P. Swoboda, 1986 .

Drosophila Regulatory factor X is necessary for ciliated sensory neuron differentiation

Maurice Kernan, B. Durand, P. Couble, 2002, Development.

Differentiation of ciliated human midbrain-derived LUHMES neurons

J. Kere, S. Katayama, P. Swoboda, 2020, Journal of Cell Science.

Identification of ciliary and ciliopathy genes in Caenorhabditis elegans through comparative genomics

L. Stein, D. Moerman, M. Marra, 2006, Genome Biology.

Neuropeptidergic Signaling and Active Feeding State Inhibit Nociception in Caenorhabditis elegans

Isabel Beets, William R Schafer, Denise S Walker, 2016, The Journal of Neuroscience.

Somatic homologous recombination in planta: The recombination frequency is dependent on the allelic state of recombining sequences and may be influenced by genomic position effects

S. Gal, P. Swoboda, B. Hohn, 1993, Molecular and General Genetics MGG.

Homologous recombination in plants

P. Swoboda, H. Puchta, B. Hohn, 2005, Experientia.

Ciliated neurons play an important role in sensory perception in many animals. Modified cilia at dendrite endings serve as sites of sensory signal capture and transduction

B. Durand, P. Couble, Maurice J. Kernan, 2002 .

The in vivo dissection of direct RFX-target gene promoters in C. elegans reveals a novel cis-regulatory element, the C-box.

P. Swoboda, Filip Crona, J. Burghoorn, 2012, Developmental biology.

Transcriptional profiling of C. elegans DAF-19 uncovers a ciliary base-associated protein and a CDK/CCRK/LF2p-related kinase required for intraflagellar transport.

E. Jorgensen, P. Swoboda, M. Leroux, 2011, Developmental biology.

Induction of intrachromosomal homologous recombination in whole plants

P. Swoboda, H. Puchta, B. Hohn, 1995 .

Iron promotes protein insolubility and aging in C. elegans

Dylan J. Sorensen, P. Kapahi, J. Andersen, 2014, Aging.

The more we know, the more we have to discover: an exciting future for understanding cilia and ciliopathies

R. Roepman, M. Ueffing, B. Durand, 2015, Cilia.

Summary Analysis of xbx genes in C . elegans

G. Ruvkun, K. Bubb, James H. Thomas, 2005 .

TRX-3, a novel intestine-specific thioredoxin in C. elegans

E. Veal, A. Sáez, María González-Barrios, 2013 .

The RFX-type transcription factor DAF-19 regulates sensory neuron cilium formation in C. elegans.

J. Thomas, P. Swoboda, J H Thomas, 2000, Molecular cell.

Genetics of Extracellular Matrix Remodeling During Organ Growth Using the Caenorhabditis elegans Pharynx Model

James H. Thomas, J. Culotti, P. Swoboda, 2010, Genetics.

Intrachromosomal homologous recombination in whole plants.

S. Gal, P. Swoboda, H. Puchta, 1994, The EMBO journal.

Selenoprotein TRXR-1 and GSR-1 are essential for removal of old cuticle during molting in Caenorhabditis elegans

Elias S. J. Arnér, J. C. Fierro-González, P. Swoboda, 2011, Proceedings of the National Academy of Sciences.

DAF-16/FOXO and HLH-30/TFEB function as combinatorial transcription factors to promote stress resistance and longevity

G. Ruvkun, J. Yates, Xin Zhou, 2018, Nature Communications.

An Expanded Role for the RFX Transcription Factor DAF-19, with Dual Functions in Ciliated and Nonciliated Neurons

P. Swoboda, Katherine P. Mueller, Debora Sugiaman-Trapman, 2018, Genetics.

Increased Expression of the Dyslexia Candidate Gene DCDC2 Affects Length and Signaling of Primary Cilia in Neurons

Juha Kere, Hans Matsson, J. Kere, 2011, PloS one.

Switching on cilia: transcriptional networks regulating ciliogenesis

Sudipto Roy, P. Swoboda, S. Choksi, 2014, Development.

XBX-1 encodes a dynein light intermediate chain required for retrograde intraflagellar transport and cilia assembly in Caenorhabditis elegans.

James H. Thomas, B. Yoder, P. Swoboda, 2003, Molecular biology of the cell.

The direct measurement of embryogenic volume and nucleo-cytoplasmic ratio during mouse pre-implantation development.

C. Aiken, J. Skepper, P. Swoboda, 2004, Reproduction.

Characterization of the human RFX transcription factor family by regulatory and target gene analysis

J. Kere, C. Daub, Morana Vitezic, 2018, BMC Genomics.

The Tubulin Deglutamylase CCPP-1 Regulates the Function and Stability of Sensory Cilia in C. elegans

D. Hall, K. Nguyen, M. Barr, 2011, Current Biology.

ABCE1 Is a Highly Conserved RNA Silencing Suppressor

P. Kylsten, P. Swoboda, K. Ekwall, 2015, PloS one.

Analysis of xbx genes in C. elegans

Gary Ruvkun, G. Ruvkun, K. Bubb, 2005, Development.

Somatic intrachromosomal homologous recombination events in populations of plant siblings

S. Gal, P. Swoboda, H. Puchta, 1995, Plant Molecular Biology.

Regulatory Factor X (RFX)-mediated transcriptional rewiring of ciliary genes in animals

P. Swoboda, J. Burghoorn, Peter Swoboda, 2010, Proceedings of the National Academy of Sciences.

Functional Genomics of the Cilium, a Sensory Organelle

Keith A. Boroevich, D. Moerman, M. Marra, 2005, Current Biology.

The C. elegans homolog of the murine cystic kidney disease gene Tg737 functions in a ciliogenic pathway and is disrupted in osm-5 mutant worms.

J. Thomas, James H. Thomas, B. Yoder, 2001, Development.

Forkhead transcription factor FKH-8 is a master regulator of primary cilia in C. elegans

J. Tena, P. Swoboda, Nuria Flames, 2021, bioRxiv.

Ciliary dyslexia candidate genes DYX1C1 and DCDC2 are regulated by Regulatory Factor X (RFX) transcription factors through X-box promoter motifs

J. Kere, E. Castrén, P. Swoboda, 2016, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Finding ciliary genes: a computational approach.

J. Henriksson, P. Swoboda, T. Bürglin, 2013, Methods in enzymology.

Distinct isoforms of the RFX transcription factor DAF-19 regulate ciliogenesis and maintenance of synaptic activity.

P. Swoboda, G. Senti, 2008, Molecular biology of the cell.

Identification of novel regulatory factor X (RFX) target genes by comparative genomics in Drosophila species

B. Durand, P. Swoboda, Vivien Rolland, 2007, Genome Biology.

The C. elegans homologs of nephrocystin-1 and nephrocystin-4 are cilia transition zone proteins involved in chemosensory perception

B. Yoder, P. Swoboda, C. Haycraft, 2005, Journal of Cell Science.

The characterization of the Caenorhabditis elegans mitochondrial thioredoxin system uncovers an unexpected protective role of thioredoxin reductase 2 in β-amyloid peptide toxicity.

P. Navas, C. Link, J. C. Fierro-González, 2012, Antioxidants & redox signaling.

The C. elegans regulatory factor X (RFX) DAF-19M module: A shift from general ciliogenesis to cell-specific ciliary and behavioral specialization.

P. Swoboda, Junho Lee, Hee-Jung Choi, 2022, Cell reports.

The C. elegans DAF-19M module: a shift from general ciliogenesis to ciliary and behavioral specialization

P. Swoboda, Junho Lee, S. Son, 2021, bioRxiv.

The Thioredoxin TRX-1 Modulates the Function of the Insulin-Like Neuropeptide DAF-28 during Dauer Formation in Caenorhabditis elegans

J. C. Fierro-González, P. Swoboda, A. Miranda-Vizuete, 2011, PloS one.

RNAi mediates post-transcriptional repression of gene expression in fission yeast Schizosaccharomyces pombe.

P. Kylsten, P. Swoboda, K. Ekwall, 2014, Biochemical and biophysical research communications.

Chapter 24 Financial structure and the tax system

Peter Swoboda, Josef Zechner, J. Zechner, 1995, Finance.

Differentiation of ciliated human midbrain-derived LUHMES neurons

J. Kere, S. Katayama, P. Swoboda, 2020, bioRxiv.

Food sensitizes C. elegans avoidance behaviours through acute dopamine signalling

William R Schafer, Yoshinori Tanizawa, W. Schafer, 2011, The EMBO journal.

Redox-dependent and redox-independent functions of Caenorhabditis elegans thioredoxin 1

J. C. Fierro-González, J. Pedrajas, P. Swoboda, 2019, Redox biology.

Primary cilia promote the differentiation of human neurons through the WNT signaling pathway

J. Kere, P. Swoboda, G. Lauter, 2023, bioRxiv.

Human LUHMES and NES cells as models for studying primary cilia in neurons.

J. Kere, P. Swoboda, K. Tammimies, 2023, Methods in cell biology.

Lifespan decrease in a Caenorhabditis elegans mutant lacking TRX‐1, a thioredoxin expressed in ASJ sensory neurons

P. Navas, P. Swoboda, A. Miranda-Vizuete, 2006, FEBS letters.

Dauer pheromone and G-protein signaling modulate the coordination of intraflagellar transport kinesin motor proteins in C. elegans

Ton de Jong, R. Willemsen, S. Rademakers, 2010, Journal of Cell Science.

Functional characterization of thioredoxin 3 (TRX-3), a Caenorhabditis elegans intestine-specific thioredoxin

E. Veal, A. Sáez, María González-Barrios, 2014, Free radical biology & medicine.

The thioredoxin TRX-1 regulates adult lifespan extension induced by dietary restriction in Caenorhabditis elegans.

María González-Barrios, J. C. Fierro-González, P. Swoboda, 2011, Biochemical and biophysical research communications.

Caenorhabditis elegans DYF-2, an orthologue of human WDR19, is a component of the intraflagellar transport machinery in sensory cilia.

J. Scholey, B. Yoder, P. Swoboda, 2006, Molecular biology of the cell.

Protective effects of the thioredoxin and glutaredoxin systems in dopamine-induced cell death.

A. Fernandes, P. Swoboda, A. Miranda-Vizuete, 2014, Free radical biology & medicine.

An Essential Role for DYF-11/MIP-T3 in Assembling Functional Intraflagellar Transport Complexes

M. P. Healey, N. Katsanis, C. C. Leitch, 2008, PLoS genetics.

Capital Markets, Entrepreneurship and Progressive Taxation

P. Steiner, P. Swoboda, 1989 .

Forkhead transcription factor FKH-8 cooperates with RFX in the direct 1 regulation of sensory cilia in C . elegans 2 3 4

J. Tena, P. Swoboda, Nuria Flames, 2022 .

DAF-16/FOXO and HLH-30/TFEB function as combinatorial transcription factors to promote stress resistance and longevity

G. Ruvkun, J. Yates, Xin Zhou, 2018, Nature Communications.

Cilia in Brain Development and Disease

P. Swoboda, I. Tapia-Páez, G. Lauter, 2018 .

Forkhead transcription factor FKH-8 cooperates with RFX in the direct regulation of sensory cilia in Caenorhabditis elegans

J. Tena, P. Swoboda, Nuria Flames, 2023, eLife.

Worms With a Single Functional Sensory Cilium Generate Proper Neuron-Specific Behavioral Output

W. Schafer, Marina Ezcurra, P. Swoboda, 2009, Genetics.

TRX-1 Regulates SKN-1 Nuclear Localization Cell Non-autonomously in Caenorhabditis elegans

B. Liu, Swathi Arur, J. C. Fierro-González, 2016, Genetics.

RNAi mediates post-transcriptional repression of gene expression in fission yeast Schizosaccharomyces pombe.

P. Kylsten, P. Swoboda, K. Ekwall, 2014, Biochemical and biophysical research communications.

TRX-1 Regulates SKN-1 Nuclear Localization Cell Non-Autonomously in Caenorhabditis 1 elegans 2 3

Swathi Arur, B. Liu, J. C. Fierro-González, 2016 .

The Retrograde IFT Machinery of C. elegans Cilia: Two IFT Dynein Complexes?

J. Scholey, P. Swoboda, L. Hao, 2011, PloS one.