D. Clayton

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Repeated exposure to one song leads to a rapid and persistent decline in an immediate early gene's response to that song in zebra finch telencephalon

F. Nottebohm, C. Mello, D. Clayton, 1995, The Journal of neuroscience : the official journal of the Society for Neuroscience.

Minimal Experience Required for Immediate-Early Gene Induction in Zebra Finch Neostriatum

Amy A. Kruse, D. Clayton, A. Kruse, 2000, Neurobiology of Learning and Memory.

Estrogen synthesis in the male brain triggers development of the avian song control pathway in vitro

David F. Clayton, D. Clayton, C. C. Holloway, 2001, Nature Neuroscience.

Functional identification of sensory mechanisms required for developmental song learning

Sarah E. London, D. Clayton, Sarah E London, 2008, Nature Neuroscience.

Habituation in songbirds

David F. Clayton, D. Clayton, S. Dong, 2009, Neurobiology of Learning and Memory.

The genomics of memory and learning in songbirds.

D. Clayton, D. F. Clayton, 2013, Annual review of genomics and human genetics.

Reptiles and Mammals Have Differentially Retained Long Conserved Noncoding Sequences from the Amniote Ancestor

Y. Gondo, M. Fujita, S. Edwards, 2010, Genome Biology and Evolution.

The genome of a songbird

Albert J. Vilella, Andreas R. Pfenning, Miriam K. Konkel, 2010, Nature.

Genes and Social Behavior

G. Robinson, R. Fernald, D. Clayton, 2008, Science.

Habituation revisited: An updated and revised description of the behavioral characteristics of habituation

Donald A. Wilson, Richard F. Thompson, T. Abrams, 2009, Neurobiology of Learning and Memory.

Stabilization of α-Synuclein Secondary Structure upon Binding to Synthetic Membranes*

A. Jonas, D. Clayton, J. George, 1998, The Journal of Biological Chemistry.

Characterization of a novel protein regulated during the critical period for song learning in the zebra finch

David F. Clayton, W. Woods, D. Clayton, 1995, Neuron.

Correspondence between sites of NGFI-A induction and sites of morphological plasticity following exposure to environmental complexity.

I. Weiler, W. Greenough, C. S. Wallace, 1995, Brain research. Molecular brain research.

Towards complete and error-free genome assemblies of all vertebrate species

Sergey Koren, Adam M. Phillippy, Eugene W. Myers, 2020, Nature.

Noninvasive diffusive optical imaging of the auditory response to birdsong in the zebra finch

Monica Fabiani, Gabriele Gratton, Kathy A. Low, 2013, Journal of Comparative Physiology.

high sensitivity. In situ hybridization using PEG-embedded tissue and riboprobes: increased cellular detail coupled with

A. Álvarez-Buylla, D. Clayton, 2011 .

In situ hybridization using PEG-embedded tissue and riboprobes: increased cellular detail coupled with high sensitivity.

A. Álvarez-Buylla, D. Clayton, 1989, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

Sexual differentiation of the zebra finch song system: potential roles for sex chromosome genes

R. Tempelman, D. Clayton, K. Replogle, 2009, BMC Neuroscience.

Seasonal Changes in Patterns of Gene Expression in Avian Song Control Brain Regions

Eliot A. Brenowitz, D. Perkel, R. Beyer, 2012, PloS one.

High throughput analysis reveals dissociable gene expression profiles in two independent neural systems involved in the regulation of social behavior

Gregory F Ball, D. Clayton, J. Drnevich, 2012, BMC Neuroscience.

Songbird Genomics: Methods, Mechanisms, Opportunities, and Pitfalls

D. Clayton, D. F. Clayton, 2004, Annals of the New York Academy of Sciences.

New Frontiers for Organismal Biology

K. Dewar, G. Robinson, G. Somero, 2013 .

Cellular promoters incorporated into the adenovirus genome: cell specificity of albumin and immunoglobulin expression

J. Darnell, J. Friedman, L. Babiss, 1986, Molecular and cellular biology.

Characterization of the Precursor Protein of the Non-Aβ Component of Senile Plaques (NACP) in the Human Central Nervous System

B. Hyman, R. Tanzi, M. Irizarry, 1996, Journal of neuropathology and experimental neurology.

Immediate-early gene responses in the avian song control system: cloning and expression analysis of the canary c-jun cDNA.

C. Mello, D. Clayton, J. George, 1994, Brain research. Molecular brain research.

Functional genomic analysis and neuroanatomical localization of miR-2954, a song-responsive sex-linked microRNA in the zebra finch

D. Clayton, Ya-Chi Lin, C. Balakrishnan, 2014, Front. Neurosci..

Brain transcriptome of the violet-eared waxbill Uraeginthus granatina and recent evolution in the songbird genome

D. Clayton, C. Chapus, C. Balakrishnan, 2013, Open Biology.

RNA-seq transcriptome analysis of male and female zebra finch cell lines.

Sarah E. London, D. Clayton, Ya-Chi Lin, 2012, Genomics.

Interaction of Human α-Synuclein and Parkinson's Disease Variants with Phospholipids

R. Perrin, W. Woods, D. Clayton, 2000, The Journal of Biological Chemistry.

Posttranscriptional modulation of gene expression in cultured rat hepatocytes

J. Darnell, D. Jefferson, D. Clayton, 1984, Molecular and cellular biology.

Liver-specific RNA metabolism in hepatoma cells: variations in transcription rates and mRNA levels

J. Darnell, D. Clayton, M. Weiss, 1985, Molecular and cellular biology.

Changes in liver-specific compared to common gene transcription during primary culture of mouse hepatocytes

J. Darnell, D. Clayton, 1983 .

New Frontiers for Organismal Biology The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters

K. Dewar, G. Robinson, G. Somero, 2014 .

Structure and expression of canary myc family genes

F. Alt, D. Clayton, R. Collum, 1991, Molecular and cellular biology.

Exposure to Long Chain Polyunsaturated Fatty Acids Triggers Rapid Multimerization of Synucleins*

R. Perrin, W. Woods, D. Clayton, 2001, The Journal of Biological Chemistry.

Noninvasive diffusive optical imaging of the auditory response to birdsong in the zebra finch

Kathy A. Low, G. Gratton, E. Maclin, 2013, Journal of Comparative Physiology A.

The variability of song variability in zebra finch (Taeniopygia guttata) populations

Sarah E. London, S. Griffith, D. Clayton, 2019, Royal Society Open Science.

Conservation and expression of IQ‐domain‐containing calpacitin gene products (neuromodulin/GAP‐43, neurogranin/RC3) in the adult and developing oscine song control system

C. Mello, D. Clayton, J. George, 2009, Developmental neurobiology.

The zebra finch neuropeptidome: prediction, detection and expression

Jonathan V Sweedler, Sarah E. London, Andinet Amare, 2010, BMC Biology.

Affinity chromatographic purification of nucleosomes containing transcriptionally active DNA sequences.

D. Clayton, V. Allfrey, V G Allfrey, 1987, Journal of molecular biology.

Dosage compensation is less effective in birds than in mammals

A. Arnold, E. Schadt, Xia Yang, 2007, Journal of biology.

Sex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds.

A. Arnold, D. Clayton, K. Replogle, 2010, Genome research.

Changes in liver-specific compared to common gene transcription during primary culture of mouse hepatocytes

J. Darnell, D. Clayton, D. F. Clayton, 1983, Molecular and cellular biology.

Genomic and neural analysis of the estradiol-synthetic pathway in the zebra finch

Sarah E. London, D. Clayton, D. F. Clayton, 2010, BMC Neuroscience.

Localized Changes in Immediate-Early Gene Regulation during Sensory and Motor Learning in Zebra Finches

D. Clayton, Hui Jin, D. F. Clayton, 1997, Neuron.

Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain

A. Milosavljevic, P. Gunaratne, C. Coarfa, 2011, BMC Genomics.

Advancing avian behavioral neuroendocrinology through genomics

Sarah E. London, D. Clayton, D. F. Clayton, 2014, Frontiers in Neuroendocrinology.

Molecular evolution of genes in avian genomes

C. Ponting, A. Heger, H. Ellegren, 2010, Genome Biology.

Researchevolution of genes in avian genomes

C. Ponting, A. Heger, H. Ellegren, 2010 .

The Songbird Neurogenomics (SoNG) Initiative: Community-based tools and strategies for study of brain gene function and evolution

Lei Liu, George Gong, Dennis Hasselquist, 2008, BMC Genomics.

Synucleins in synaptic plasticity and neurodegenerative disorders

D. Clayton, J. George, D. F. Clayton, 1999, Journal of neuroscience research.

The synucleins: a family of proteins involved in synaptic function, plasticity, neurodegeneration and disease

David F. Clayton, D. Clayton, J. George, 1998, Trends in Neurosciences.

Birdsong “Transcriptomics”: Neurochemical Specializations of the Oscine Song System

Claudio V. Mello, David F. Clayton, C. Mello, 2008, PloS one.

Forebrain-enriched RNAs of the canary: a population analysis using hybridization kinetics.

D. Clayton, M. Huecas, 1990, Brain research. Molecular brain research.

Probes for rare mRNAs reveal distributed cell subsets in canary brain

F. Nottebohm, D. Clayton, K. Nastiuk, 1988, Neuron.

Dependence of liver-specific transcription on tissue organization

J. Darnell, D. Clayton, A. Harrelson, 1985, Molecular and cellular biology.

The Zebra Finch genome and avian genomics in the wild

S. Edwards, D. Clayton, C. Balakrishnan, 2010 .

Seasonal Differences of Gene Expression Profiles in Song Sparrow (Melospiza melodia) Hypothalamus in Relation to Territorial Aggression

J. Wingfield, M. Band, M. Mukai, 2009, PloS one.

The Genomic Action Potential

D. Clayton, D. F. Clayton, 2000, Neurobiology of Learning and Memory.

Differential regulation in the avian song control circuit of an mRNA predicting a highly conserved protein related to protein kinase C and the bcr oncogene.

D. Clayton, J. George, 1992, Brain research. Molecular brain research.

Concurrent invasions by European starlings (Sturnus vulgaris) suggest selection on shared genomic regions even after genetic bottlenecks

Hannah M. Rowland, Gregory F Ball, Adam P. A. Cardilini, 2021, bioRxiv.

Transcriptional Control of β-Globin and Liver-Specific Genes in Mouse Cells

J. Darnell, D. Clayton, M. Salditt-Georgieff, 1984 .

The neurobiology of Zebra Finch song: insights from gene expression studies

Sarah E. London, D. Clayton, D. F. Clayton, 2010 .

Molecular Neurobiology of Bird Song

D. Clayton, D. F. Clayton, 2007 .

Natural selection in avian protein‐coding genes expressed in brain

H. Ellegren, Mikael Brandström, E. Axelsson, 2008, Molecular ecology.

The role of the genome in experience-dependent plasticity: Extending the analogy of the genomic action potential

P. Frankland, A. Citri, E. Binder, 2019, Proceedings of the National Academy of Sciences.

Nigral and Cortical Lewy Bodies and Dystrophic Nigral Neurites in Parkinson's Disease and Cortical Lewy Body Disease Contain α-synuclein Immunoreactivity

B. Hyman, T. Gómez-Isla, M. Irizarry, 1998, Journal of neuropathology and experimental neurology.

Proteomic analyses of zebra finch optic tectum and comparative histochemistry.

Sarah E. London, H. Luksch, S. Gandhi, 2007, Journal of proteome research.

Brain transcriptome sequencing and assembly of three songbird model systems for the study of social behavior

Sarah E. London, John C. Wingfield, David F. Clayton, 2014, PeerJ.

Activation and Habituation of Extracellular Signal-Regulated Kinase Phosphorylation in Zebra Finch Auditory Forebrain during Song Presentation

Hui-Yun Cheng, D. Clayton, David F Clayton, 2004, The Journal of Neuroscience.

The variability of song variability in wild and domesticated zebra finches Taeniopygia guttata

Sarah E. London, S. Griffith, D. Clayton, 2018, bioRxiv.

Differential induction of the ZENK gene in the avian forebrain and song control circuit after metrazole-induced depolarization.

C. Mello, D. Clayton, D. F. Clayton, 1995, Journal of neurobiology.

Lipid imaging in the zebra finch brain with secondary ion mass spectrometry

J. Sweedler, D. Clayton, K. Amaya, 2007 .

Protein-protein interactions of alpha-synuclein in brain homogenates and transfected cells.

J. Payton, R. Perrin, D. Clayton, 2001, Brain research. Molecular brain research.

Delayed localization of synelfin (synuclein, NACP) to presynaptic terminals in cultured rat hippocampal neurons.

G. Withers, G. Banker, D. Clayton, 1997, Brain research. Developmental brain research.

Variation in reproductive success across captive populations: Methodological differences, potential biases and opportunities

Ida E. Bailey, S. Healy, S. Derégnaucourt, 2017 .

Dynamic Role of Postsynaptic Caspase-3 and BIRC4 in Zebra Finch Song-Response Habituation

D. Clayton, G. Huesmann, D. F. Clayton, 2006, Neuron.

Role of gene regulation in song circuit development and song learning.

D. Clayton, D. F. Clayton, David F. Clayton, 1997, Journal of neurobiology.

Interaction of human alpha-Synuclein and Parkinson's disease variants with phospholipids. Structural analysis using site-directed mutagenesis.

R. Perrin, W. Woods, D. Clayton, 2000, The Journal of biological chemistry.

Response Modulation in the Zebra Finch Neostriatum: Relationship to Nuclear Gene Regulation

Roy Stripling, David F. Clayton, S. Volman, 1997, The Journal of Neuroscience.

Song presentation induces gene expression in the songbird forebrain.

D. Vicario, C. Mello, D. Clayton, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Development of song responses in the zebra finch caudomedial neostriatum: role of genomic and electrophysiological activities.

Amy A. Kruse, D. Clayton, A. Kruse, 2001, Journal of neurobiology.

Integrating Genomes, Brain and Behavior in the Study of Songbirds

Sarah E. London, D. Clayton, C. Balakrishnan, 2009, Current Biology.

C. Mello, D. Clayton, P. Lovell, 2019, Scientific Reports.

Transcript‐ and annotation‐guided genome assembly of the European starling

Richard J. Edwards, Gregory F Ball, Scott J. Werner, 2021, bioRxiv.

Small molecule analysis and imaging of fatty acids in the zebra finch song system using time‐of‐flight‐secondary ion mass spectrometry

J. Sweedler, D. Clayton, K. Amaya, 2011, Journal of neurochemistry.

Expression of fragile X mental retardation protein within the vocal control system of developing and adult male zebra finches

S. Ceman, D. Clayton, Claudia Winograd, 2008, Neuroscience.

Testosterone regulates α-synuclein mRNA in the avian song system

Eliot A. Brenowitz, D. Kroodsma, M. Miller, 2001 .

Synelfin Regulation during the Critical Period for Song Learning in Normal and Isolated Juvenile Zebra Finches

D. Clayton, Hui Jin, D. F. Clayton, 1997, Neurobiology of Learning and Memory.

The Non-Amyloid-β Component of Alzheimer’s Disease Plaque Amyloid: Comparative Analysis Suggests a Normal Function as a Synaptic Plasticizer

D. Clayton, J. George, D. F. Clayton, 1996 .

The canary androgen receptor mRNA is localized in the song control nuclei of the brain and is rapidly regulated by testosterone.

D. Clayton, K. Nastiuk, D. F. Clayton, 1995, Journal of neurobiology.

Context-specific habituation of the zenk gene response to song in adult zebra finches

Amy A. Kruse, D. Clayton, A. Kruse, 2004, Neurobiology of Learning and Memory.

The opportunities and challenges of large-scale molecular approaches to songbird neurobiology

C. Mello, D. Clayton, D. F. Clayton, 2015, Neuroscience & Biobehavioral Reviews.

A generalization of the transmission/disequilibrium test for uncertain-haplotype transmission.

D. Clayton, D. Clayton, D Clayton, 1999, American journal of human genetics.

Seasonal and tissue-specific regulation of canary androgen receptor messenger ribonucleic acid.

D. Clayton, K. Nastiuk, D. F. Clayton, 1994, Endocrinology.

Acute social isolation alters neurogenomic state in songbird forebrain

Teresa M Abaurrea, M. Gahr, D. Clayton, 2019, Proceedings of the National Academy of Sciences.

Transmission/disequilibrium tests for extended marker haplotypes.

D. Clayton, H. Jones, D. Clayton, 1999, American journal of human genetics.

Molecular evolution of genes in avian genomes

C. Ponting, A. Heger, H. Ellegren, 2010, Genome Biology.