Jérémie Bourdon

发表

Parallel derivation of isogenic human primed and naive induced pluripotent stem cells

T. Mikkelsen, R. Redon, B. Schwikowski, 2018, Nature Communications.

Qualitative modelling and analysis of gene regulatory networks: application to the adaptation of Escherichia coli bacterium to carbon availability

Jérémie Bourdon, J. Ahmad, D. Eveillard, 2009 .

A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems

Jérémie Bourdon, D. Eveillard, Abdelhalim Larhlimi, 2017, PloS one.

Dynamical analysis of ! -Euclidean algorithms

B. Vallée, Jérémie Bourdon, B. Daireaux, 2002 .

On the Khintchine constant for centred continued fraction expansions.

Jérémie Bourdon, 2007 .

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

Jérémie Bourdon, Guillaume Collet, Sven Thiele, 2017, PLoS Comput. Biol..

Impact of the species compartment definition on quantitative modeling of microbial communities

Jérémie Bourdon, D. Eveillard, M. Budinich, 2015, bioRxiv.

Model of the delayed translation of cyclin B maternal mRNA after sea urchin fertilization

A. Siegel, J. Morales, P. Cormier, 2016, Molecular reproduction and development.

emporal constraints of a gene regulatory network : efining a qualitative simulation

Jérémie Bourdon, D. Eveillard, J. Fromentin, 2009 .

A Parallel Scheme for Comparing transcription Factor Binding Sites Matrices

Solenne Carat, Rémi Houlgatte, Jérémie Bourdon, 2010, J. Bioinform. Comput. Biol..

Integrated pseudotime analysis of human pre-implantation embryo single-cell transcriptomes reveals the dynamics of lineage specification.

T. Mikkelsen, M. Soumillon, C. Chazaud, 2021, Cell stem cell.

Large-scale regulatory and signaling network assembly through linked open data

Jérémie Bourdon, Maxime Folschette, Carito Guziolowski, 2021, Database J. Biol. Databases Curation.

Chromatin accessibility combined with enhancer clusters activation mediates heterogeneous response to dexamethasone in myeloma cells

F. Westermann, C. Herrmann, F. Magrangeas, 2021, bioRxiv.

Bayesian Integrative Modeling of Genome-Scale Metabolic and Regulatory Networks

Mourad Elloumi, Hanen Mhamdi, Abdelhalim Larhlimi, 2020, Informatics.

Induction of Human Trophoblast Stem Cells from Somatic Cells and Pluripotent Stem Cells.

Stéphanie Kilens, D. Meistermann, C. Chariau, 2020, Cell reports.

Computational discovery of dynamic cell line specific Boolean networks from multiplex time-course data

Loïc Paulevé, Julio Saez-Rodriguez, Anne Siegel, 2018, PLoS Comput. Biol..

Probabilistic Modeling of Microbial Metabolic Networks for Integrating Partial Quantitative Knowledge Within the Nitrogen Cycle

Jérémie Bourdon, Damien Vintache, Damien Eveillard, 2019, Front. Microbiol..

Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment.

Jérémie Bourdon, Anne Siegel, Damien Eveillard, 2011, Omics : a journal of integrative biology.

Integrating Quantitative Knowledge into a Qualitative Gene Regulatory Network

Jérémie Bourdon, Anne Siegel, Damien Eveillard, 2011, PLoS Comput. Biol..

Spatio-temporal analysis of human preimplantation development reveals dynamics of epiblast and trophectoderm

T. Mikkelsen, M. Soumillon, Stéphanie Kilens, 2019, bioRxiv.

OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques

Jérémie Bourdon, Damien Eveillard, Abdelhalim Larhlimi, 2015, CMSB.

Generation of human induced trophoblast stem cells

Stéphanie Kilens, D. Meistermann, C. Chariau, 2020, bioRxiv.

On the Stack-Size of General Tries

Jérémie Bourdon, Brigitte Vallée, Markus E. Nebel, 2001, RAIRO Theor. Informatics Appl..

Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data

Jérémie Bourdon, Torsten Schaub, Carito Guziolowski, 2018, CMSB.

Modelization of the regulation of protein synthesis following fertilization in sea urchin shows requirement of two processes: a destabilization of eIF4E:4E-BP complex and a great stimulation of the 4E-BP-degradation mechanism, both rapamycin-sensitive

A. Siegel, J. Morales, P. Cormier, 2014, Front. Genet..

A combinatorial approach to products of Pisot substitutions pdf

Jérémie Bourdon, Valérie Berthé, Anne Siegel, 2014, Ergodic Theory and Dynamical Systems.

Exploring the impact of dexamethasone on gene regulation in myeloma cells

F. Westermann, C. Herrmann, F. Magrangeas, 2023, Life Science Alliance.

Logic and Linear Programs to Understand Cancer Response

Jérémie Bourdon, Carito Guziolowski, Hanen Mhamdi, 2019, Automated Reasoning for Systems Biology and Medicine.

Generating Discrete Planes with Substitutions

Jérémie Bourdon, Valérie Berthé, Anne Siegel, 2013, WORDS.

Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs

Jérémie Bourdon, Anne Siegel, Oumarou Abdou-Arbi, 2014, BMC Systems Biology.

A Logic for Checking the Probabilistic Steady-State Properties of Reaction Networks

Anne Siegel, Vincent Picard, Jérémie Bourdon, 2017, J. Comput. Biol..

Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment.

A. Siegel, T. Tonon, C. Boyen, 2011, Omics : a journal of integrative biology.

On the Stack-Size of General Tries

M. Nebel, B. Vallée, Jérémie Bourdon, 2001, RAIRO - Theoretical Informatics and Applications.

Size and path length of Patricia tries: Dynamical sources context

Jérémie Bourdon, Jérémie Bourdon, 2001, Random Struct. Algorithms.

Pattern Matching Statistics on Correlated Sources

Jérémie Bourdon, Brigitte Vallée, B. Vallée, 2006, LATIN.

Generalized Pattern Matching Statistics

Jérémie Bourdon, Brigitte Vallée, B. Vallée, 2002 .

A Logic for Checking the Probabilistic Steady-State Properties of Reaction Networks

A. Siegel, Jérémie Bourdon, Vincent Picard, 2017, J. Comput. Biol..

Dynamical analysis of alpha-Euclidean algorithms

Jérémie Bourdon, Brigitte Vallée, Benoît Daireaux, 2002, J. Algorithms.

Statistical properties of factor oracles

Jérémie Bourdon, Irena Rusu, Jérémie Bourdon, 2009, J. Discrete Algorithms.

Computational discovery of dynamic cell line specific Boolean networks from multiplex time-course data

J. Saez-Rodriguez, Loïc Paulevé, A. Siegel, 2018, PLoS Comput. Biol..

Large deviation properties for patterns

M. Régnier, Jérémie Bourdon, 2012, J. Discrete Algorithms.