Yuanyuan Zhang

发表

Integrating Somatic Mutations for Breast Cancer Survival Prediction Using Machine Learning Methods

Junying Zhang, Zongzhe He, Xiguo Yuan, 2021, Frontiers in Genetics.

Stratification of Breast Cancer by Integrating Gene Expression Data and Clinical Variables

Xiguo Yuan, Jianing Xi, Zhaowen Liu, 2019, Molecules.

A network-based approach to identify disease-associated gene modules through integrating DNA methylation and gene expression.

Shouheng Tuo, Zhaowen Liu, Yuanyuan Zhang, 2015, Biochemical and biophysical research communications.

Genome-wide Differential-based Analysis of the Relationship between DNA Methylation and Gene Expression in Cancer

Yuanyuan Zhang, Shudong Wang, Chuanhua Kou, 2019 .

Inferring Communities and Key Genes of Triple Negative Breast Cancer Based on Robust Principal Component Analysis and Network Analysis

Jin-Xing Liu, Yuanyuan Zhang, J. Shang, 2019, IDMB.

Identification of functionally methylated regions based on discriminant analysis through integrating methylation and gene expression data.

Junying Zhang, Yuanyuan Zhang, 2015, Molecular bioSystems.

Quantitative identification of differentially methylated loci based on relative entropy for matched case-control data.

Junliang Shang, Yuanyuan Zhang, Junying Zhang, 2013, Epigenomics.

Incorporating heuristic information into ant colony optimization for epistasis detection

Xiujuan Lei, Baodi Chen, Junliang Shang, 2012, Genes & Genomics.

PESM: A novel approach of tumor purity estimation based on sample specific methylation sites

Yuanyuan Zhang, Shudong Wang, Shanchen Pang, 2020, J. Bioinform. Comput. Biol..

A NEW METHOD OF DETERMINING THRESHOLD OF GENE NETWORK BASED ON PHENOTYPES

Yuanyuan Zhang, Shudong Wang, Dazhi Meng, 2011 .

Data-Driven-Based Approach to Identifying Differentially Methylated Regions Using Modified 1D Ising Model

Yuanyuan Zhang, Shudong Wang, Xinzeng Wang, 2018, BioMed research international.

Design of the Piano Score Recommendation Image Analysis System Based on the Big Data and Convolutional Neural Network

Yuanyuan Zhang, 2021, Comput. Intell. Neurosci..

HSSG: Identification of Cancer Subtypes Based on Heterogeneity Score of A Single Gene

Yuanyuan Zhang, Shanchen Pang, Kuijie Zhang, 2022, Cells.

NMFNA: a non-negative matrix factorization network analysis method for identifying communities and characteristic genes from pancreatic cancer data

Jin-Xing Liu, Yuanyuan Zhang, J. Shang, 2020 .

NMFNA: a non-negative matrix factorization network analysis method for identifying communities and characteristic genes from multi-type pancreatic cancer data

Jin-Xing Liu, Yuanyuan Zhang, J. Shang, 2020 .

EFMSDTI: Drug-target interaction prediction based on an efficient fusion of multi-source data

Wei Chen, Yuanyuan Zhang, Shudong Wang, 2022, Frontiers in Pharmacology.

SGAEMDA: Predicting miRNA-Disease Associations Based on Stacked Graph Autoencoder

Yuanyuan Zhang, Shudong Wang, Sibo Qiao, 2022, Cells.

EpiReSIM: A Resampling Method of Epistatic Model without Marginal Effects Using Under-Determined System of Equations

Yuanyuan Zhang, J. Shang, Jinxing Liu, 2022, Genes.

Specific gene module pair-based target identification and drug discovery

Yuanyuan Zhang, Wuxia Zhang, Yuanyuan Zhang, 2023, Frontiers in Pharmacology.

Network-Based Inference Framework for Identifying Cancer Genes from Gene Expression Data

Yaling Yin, Yuanyuan Zhang, Junying Zhang, 2013, BioMed research international.

ANALYSIS FOR CASCADING FAILURES WITH DNA REPAIR FUNCTION OF GENE NETWORK AND ITS APPLICATION

Dazhi Meng, Longxiao Sun, Shudong Wang, 2012 .

PEIS: a novel approach of tumor purity estimation by identifying information sites through integrating signal based on DNA methylation data

Xinzeng Wang, Lihua Wang, Shanchen Pang, 2019, BMC Bioinformatics.

TagSNP-set selection for genotyping using integrated data

Shudong Wang, Gaowei Liu, Xinzeng Wang, 2021, Future Gener. Comput. Syst..

A Novel Analytical Method for Structural Characteristics of Gene Networks and Its Application

Yuanyuan Zhang, Kaikai Li, Shudong Wang, 2012 .

NMFNA: A Non-negative Matrix Factorization Network Analysis Method for Identifying Modules and Characteristic Genes of Pancreatic Cancer

Jin-Xing Liu, Yuanyuan Zhang, J. Shang, 2021, Frontiers in Genetics.

Comparative Analysis of Unsupervised Protein Similarity Prediction Based on Graph Embedding

Yuanyuan Zhang, Shudong Wang, J. Shang, 2021, Frontiers in Genetics.

SINE: Second-Order Information Network Embedding

Shudong Wang, Yuanyuan Zhang, Ziqi Wang, 2020, IEEE Access.

MOPIO: A Multi-Objective Pigeon-Inspired Optimization Algorithm for Community Detection

Yan Lindsay Sun, Jin-Xing Liu, Junliang Shang, 2020, Symmetry.

HGDD: A Drug-Disease High-Order Association Information Extraction Method for Drug Repurposing via Hypergraph

Shanchen Pang, Sibo Qiao, Shudong Wang, 2021, ISBRA.

Identification of PIWI-interacting RNA modules by weighted correlation network analysis

Zhaowen Liu, Xiguo Yuan, Yuanyuan Zhang, 2017, Cluster Computing.

Identification of PIWI-interacting RNA modules by weighted correlation network analysis

Junying Zhang, Yajun Liu, Yaoyao Li, 2017, Cluster Computing.

VGAEDTI: drug-target interaction prediction based on variational inference and graph autoencoder

Yuanyuan Zhang, Shudong Wang, Yinfei Feng, 2023, BMC Bioinformatics.

Sequence-based drug-target affinity prediction using weighted graph neural networks

Zhuguo Li, Yuanyuan Zhang, Mingjian Jiang, 2022, BMC Genomics.

MSGNN-DTA: Multi-Scale Topological Feature Fusion Based on Graph Neural Networks for Drug–Target Binding Affinity Prediction

Yuanyuan Zhang, Shanchen Pang, Kuijie Zhang, 2023, International journal of molecular sciences.

Detecting pan-cancer conserved microRNA modules from microRNA expression profiles across multiple cancers.

Shouheng Tuo, Aimin Li, Xiguo Yuan, 2015, Molecular bioSystems.

FHSA-SED: Two-Locus Model Detection for Genome-Wide Association Study with Harmony Search Algorithm

Junying Zhang, Shouheng Tuo, Xiguo Yuan, 2016, PloS one.

High-Order Degree and Combined Degree in Complex Networks

Yuanyuan Zhang, Shudong Wang, Qifang Song, 2018, Mathematical Problems in Engineering.

Predicting potential small molecule-miRNA associations utilizing truncated schatten p-norm

Yuanyuan Zhang, Shanchen Pang, Wenhao Wu, 2023, Briefings Bioinform..

TLNPMD: Prediction of miRNA-Disease Associations Based on miRNA-Drug-Disease Three-Layer Heterogeneous Network

Xiangzhen Kong, Yuanyuan Zhang, J. Shang, 2022, Molecules.

Application of Artificial Intelligence in Drug-Drug Interactions Prediction: A Review.

Yuanyuan Zhang, Yinfei Feng, Zengqian Deng, 2023, Journal of chemical information and modeling.