Haiquan Li

发表

Integrative genomics analyses unveil downstream biological effectors of disease-specific polymorphisms buried in intergenic regions

Lorenzo L. Pesce, Jason H. Moore, J. Denny, 2016, npj Genomic Medicine.

Curation-free biomodules mechanisms in prostate cancer predict recurrent disease

Y. Lussier, X. Yang, Haiquan Li, 2013, BMC Medical Genomics.

Novel disease syndromes unveiled by integrative multiscale network analysis of diseases sharing molecular effectors and comorbidities

Pradeep C. Koripella, E. Bedrick, Jiali Han, 2018, BMC Medical Genomics.

iDEG: a single-subject method utilizing local estimates of dispersion to impute differential expression between two transcriptomes

Samir Rachid Zaim, Y. Lussier, J. Berghout, 2018, bioRxiv.

N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes

Yves A. Lussier, Haiquan Li, Joanne Berghout, 2017, BMC Medical Genomics.

On fusion methods for knowledge discovery from multi-omics datasets

Haiquan Li, Jiali Han, Jiali Han, 2020, Computational and structural biotechnology journal.

Oligo- and Polymetastatic Progression in Lung Metastasis(es) Patients Is Associated with Specific MicroRNAs

Oleksiy Karpenko, R. Weichselbaum, Y. Lussier, 2012, PloS one.

The Mechanism of Cancer Drug Addiction in ALK-Positive T-Cell Lymphoma

Y. Lussier, K. Elenitoba-Johnson, M. Lim, 2019, Oncogene.

‘N-of-1-pathways’ unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine

Ian T. Foster, Neil Bahroos, Yves A. Lussier, 2014, J. Am. Medical Informatics Assoc..

kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects

Yves A. Lussier, Haiquan Li, Joanne Berghout, 2017, J. Biomed. Informatics.

Comparison and impact of COVID-19 for patients with cancer: a survival analysis of fatality rate controlling for age, sex and cancer type

Y. Lussier, C. Kenost, Haiquan Li, 2021, BMJ Health & Care Informatics.

Novel disease syndromes unveiled by integrative multiscale network analysis of diseases sharing molecular effectors and comorbidities

Pradeep C. Koripella, E. Bedrick, Jiali Han, 2018, BMC Medical Genomics.

Convergent downstream candidate mechanisms of independent intergenic polymorphisms between co-classified diseases implicate epistasis among noncoding elements§

Ian T. Foster, Yves A. Lussier, Jianrong Li, 2017, PSB.

Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory

Yves A. Lussier, Jianrong Li, Haiquan Li, 2012, J. Am. Medical Informatics Assoc..

eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs

Yves A. Lussier, Jianrong Li, Haiquan Li, 2015, J. Biomed. Informatics.

Breakthroughs in genomics data integration for predicting clinical outcome

Yves A. Lussier, Haiquan Li, Y. Lussier, 2012, J. Biomed. Informatics.

Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases

Yves A. Lussier, Jianrong Li, Haiquan Li, 2013, J. Am. Medical Informatics Assoc..

Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes

Yves A. Lussier, Joanne Berghout, Qike Li, 2019, AMIA.

Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants

Yves A. Lussier, Jianrong Li, Haiquan Li, 2012, J. Am. Medical Informatics Assoc..

Hypothesis Generation from Heterogeneous Datasets

Y. Lussier, Haiquan Li, 2014 .

Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival

Yves A. Lussier, Haiquan Li, Qike Li, 2015, Bioinform..

The mitochondrial cardiolipin remodeling enzyme lysocardiolipin acyltransferase is a novel target in pulmonary fibrosis.

I. Noth, Wei Zhang, Y. Lussier, 2014, American journal of respiratory and critical care medicine.

Prognostic implication of pulmonary function at the beginning of postoperative radiotherapy in non-small cell lung cancer.

Y. Lussier, Haiquan Li, Jaesung Heo, 2014, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations

Yves A. Lussier, Jianrong Li, Haiquan Li, 2017, J. Am. Medical Informatics Assoc..

N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes

Y. Lussier, J. Berghout, V. Gardeux, 2017, BMC Medical Genomics.

iDEG: a single-subject method utilizing local estimates of dispersion to impute differential expression between two transcriptomes

Samir Rachid Zaim, Y. Lussier, J. Berghout, 2018, bioRxiv.

Analysis of aggregated cell–cell statistical distances within pathways unveils therapeutic-resistance mechanisms in circulating tumor cells

Yves A. Lussier, Haiquan Li, James L. Chen, 2016, Bioinform..

Interpreting Personal Transcriptomes: Personalized Mechanism-Scale Profiling of RNA-seq Data

Yves A. Lussier, Haiquan Li, Alan Perez-Rathke, 2012, Pacific Symposium on Biocomputing.

In Silico cancer cell versus stroma cellularity index computed from species-specific human and mouse transcriptome of xenograft models: towards accurate stroma targeting therapy assessment

Y. Lussier, V. Gardeux, X. Yang, 2014, BMC Medical Genomics.

Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms

Yves A. Lussier, Haiquan Li, Joanne Berghout, 2018, PSB.

Correction: Oligo- and Polymetastatic Progression in Lung Metastasis(es) Patients Is Associated with Specific MicroRNAs

Oleksiy Karpenko, R. Weichselbaum, Y. Lussier, 2013, PLoS ONE.

COPD Hospitalization Risk Increased with Distinct Patterns of Multiple Systems Comorbidities Unveiled by Network Modeling

Yves A. Lussier, Jianrong Li, Andrew D. Boyd, 2014, AMIA.

Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases

E. Gamazon, Y. Lussier, X. Yang, 2013, J. Am. Medical Informatics Assoc..

iDEG: a single-subject method utilizing local estimates of dispersion to impute differential expression between two transcriptomes

Yves A. Lussier, Haiquan Li, Joanne Berghout, 2018, bioRxiv.

Biomechanisms of Comorbidity: Reviewing Integrative Analyses of Multi-omics Datasets and Electronic Health Records

M. Gonzalez-Garay, Y. Lussier, J. Berghout, 2016, Yearbook of Medical Informatics.