N. Shaik

发表

Khalid Rehman Hakeem, N. Shaik, B. Banaganapalli, 2019, Springer International Publishing.

Protein phenotype diagnosis of autosomal dominant calmodulin mutations causing irregular heart rhythms

Babajan Banaganapalli, Ramu Elango, N. Shaik, 2018, Journal of cellular biochemistry.

Computational Molecular Phenotypic Analysis of PTPN22 (W620R), IL6R (D358A), and TYK2 (P1104A) Gene Mutations of Rheumatoid Arthritis

N. Shaik, B. Banaganapalli, 2019, Front. Genet..

Comparative analysis of hemagglutinin of 2009 H1N1 influenza A pandemic indicates its evolution to 1918 H1N1 pandemic.

Anjana Munshi, Noor Ahmad Shaik, Tariq Ahmad Masoodi, 2012, Gene.

Tools and Methods in Analysis of Complex Sequences

J. Al-Aama, N. Shaik, B. Banaganapalli, 2019, Essentials of Bioinformatics, Volume I.

In silico analysis of Single Nucleotide Polymorphisms (SNPs) in human BRAF gene.

Tariq Ahmad Masoodi, J. Al-Aama, N. Shaik, 2012, Gene.

Functional genomics based prioritization of potential nsSNPs in EPHX1, GSTT1, GSTM1 and GSTP1 genes for breast cancer susceptibility studies.

Tariq Ahmad Masoodi, J. Al-Aama, N. Shaik, 2012, Genomics.

Essentials of Bioinformatics, Volume III: In Silico Life Sciences: Agriculture

Khalid Rehman Hakeem, N. Shaik, B. Banaganapalli, 2019 .

Identification of key regulatory genes connected to NF-κB family of proteins in visceral adipose tissues using gene expression and weighted protein interaction network

N. Shaik, B. Banaganapalli, R. Elango, 2019, PloS one.

Synthesis and Biological Activity of New Resveratrol Derivative and Molecular Docking: Dynamics Studies on NFkB

J. Al-Aama, N. Shaik, B. Banaganapalli, 2013, Applied Biochemistry and Biotechnology.

Whole exome sequencing of a consanguineous family identifies the possible modifying effect of a globally rare AK5 allelic variant in celiac disease development among Saudi patients

Omran M. Rashidi, J. Al-Aama, Jun Wang, 2017, PloS one.

Structural and Molecular Interaction Studies on Familial Hypercholesterolemia Causative PCSK9 Functional Domain Mutations Reveals Binding Affinity Alterations with LDLR

N. Shaik, B. Banaganapalli, Z. Awan, 2020 .

Exploring celiac disease candidate pathways by global gene expression profiling and gene network cluster analysis

J. Al-Aama, Aftab Ahmad, N. Shaik, 2020, Scientific Reports.

Molecular profiling of lamellar ichthyosis pathogenic missense mutations on the structural and stability aspects of TGM1 protein

N. Shaik, B. Banaganapalli, R. Elango, 2020, Journal of biomolecular structure & dynamics.

Variations in the GST activity are associated with single and combinations of GST genotypes in both male and female diabetic patients

J. Al-Aama, N. Shaik, N. Shaik, 2013, Molecular Biology Reports.

Replication of GWAS loci revealed the moderate effect of TNRC6B locus on susceptibility of Saudi women to develop uterine leiomyomas

N. Shaik, B. Banaganapalli, R. Elango, 2017, The journal of obstetrics and gynaecology research.

Unraveling the role of salt-sensitivity genes in obesity with integrated network biology and co-expression analysis

R. Jansen, A. Altaf, N. Shaik, 2020, PloS one.

Exome Sequencing Identifies the Extremely Rare ITGAV and FN1 Variants in Early Onset Inflammatory Bowel Disease Patients

Omran M. Rashidi, N. Shaik, B. Banaganapalli, 2022, Frontiers in Pediatrics.

Computational Analysis of Breast Cancer GWAS Loci Identifies the Putative Deleterious Effect of STXBP4 and ZNF404 Gene Variants

Tariq Ahmad Masoodi, N. Shaik, B. Banaganapalli, 2017, Journal of cellular biochemistry.

Investigation of Calpain 10 (rs2975760) gene polymorphism in Asian Indians with Gestational Diabetes Mellitus

N. Shaik, Q. Hasan, P. Rao, 2014, Meta gene.

Identification of novel mycobacterium tuberculosis leucyl-tRNA synthetase inhibitor using a knowledge-based computational screening approach

Omran M. Rashidi, N. Shaik, B. Banaganapalli, 2022, Journal of King Saud University - Science.

Screening of common genetic variants in the APOB gene related to familial hypercholesterolemia in a Saudi population

M. Batais, K. Alharbi, N. Shaik, 2019, Medicine.

Salvadora persica L.: A Medicinal Plant with Multifaceted Role in Maintaining Oral Hygiene

Khalid Rehman Hakeem, N. Shaik, B. Banaganapalli, 2019, Plant and Human Health, Volume 3.

No evidence for the role of somatic mutations and promoter hypermethylation of FH gene in the tumorigenesis of nonsyndromic uterine leiomyomas

N. Shaik, Q. Hasan, S. Chava, 2012, Tumor Biology.

A single dose of replication-competent VSV-vectored vaccine expressing SARS-CoV-2 S1 protects against virus replication in a hamster model of severe COVID-19

P. Shi, N. Shaik, C. Wirblich, 2021, npj Vaccines.

Association of Four Missense SNPs with Preeclampsia in Saudi Women

N. Shaik, B. Banaganapalli, R. Elango, 2020, Saudi journal of medicine & medical sciences.

Myocardial infarction biomarker discovery with integrated gene expression, pathways and biological networks analysis.

J. Al-Aama, N. Shaik, B. Banaganapalli, 2020, Genomics.

Pathological repeat variation at the SCA17/TBP gene in south Indian patients

N. Shaik, Q. Hasan, I. A. Khan, 2015, Journal of the Neurological Sciences.

Whole exome sequencing of a Saudi family and systems biology analysis identifies CPED1 as a putative causative gene to Celiac Disease

Omran M. Rashidi, Hifaa A. Bokhari, J. Al-Aama, 2020, Saudi journal of biological sciences.

Molecular modelling and dynamic simulations of sequestosome 1 (SQSTM1) missense mutations linked to Paget disease of bone

N. Shaik, R. Elango, K. Nasser, 2020, Journal of biomolecular structure & dynamics.

Complex Inheritance of Rare Missense Variants in PAK2, TAP2, and PLCL1 Genes in a Consanguineous Arab Family With Multiple Autoimmune Diseases Including Celiac Disease

Omran M. Rashidi, N. Shaik, B. Banaganapalli, 2022, Frontiers in Pediatrics.

Integrative weighted molecular network construction from transcriptomics and genome wide association data to identify shared genetic biomarkers for COPD and lung cancer

N. Shaik, B. Banaganapalli, R. Elango, 2022, PloS one.

Novel MYO1D Missense Variant Identified Through Whole Exome Sequencing and Computational Biology Analysis Expands the Spectrum of Causal Genes of Laterality Defects

N. Shaik, B. Banaganapalli, R. Elango, 2021, Frontiers in Medicine.

Molecular design, synthesis and biological characterization of novel Resveratrol derivative as potential anticancer agent targeting NF-κB.

Aftab Ahmad, N. Shaik, Z. Awan, 2020, Journal of applied biomedicine.

Identification of miRNA–mRNA–TFs regulatory network and crucial pathways involved in asthma through advanced systems biology approaches

N. Shaik, B. Banaganapalli, R. Elango, 2022, PLoS ONE.

A comparative mRNA- and miRNA transcriptomics reveals novel molecular signatures associated with metastatic prostate cancers

N. Shaik, B. Banaganapalli, R. Elango, 2022, Frontiers in Genetics.

Molecular insights into the coding region mutations of low‐density lipoprotein receptor adaptor protein 1 (LDLRAP1) linked to familial hypercholesterolemia

K. Jamil, N. Shaik, B. Banaganapalli, 2020, The journal of gene medicine.

Introduction to Nucleic Acid Sequencing

N. Shaik, P. Shetty, Francis Amirtharaj, 2019, Essentials of Bioinformatics, Volume I.

Identification of a Rare Exon 19 Skipping Mutation in ALMS1 Gene in Alström Syndrome Patients From Two Unrelated Saudi Families

J. Al-Aama, Aftab Ahmad, N. Shaik, 2021, Frontiers in Pediatrics.

Bioinformatics insights into the genes and pathways on severe COVID-19 pathology in patients with comorbidities

N. Shaik, B. Banaganapalli, R. Elango, 2022, Frontiers in Physiology.

Targeted Molecular Sequencing Revealed Allelic Heterogeneity of BRAF and PTPN11 Genes among Arab Noonan Syndrome Patients

N. Shaik, B. Banaganapalli, R. Elango, 2018, Russian Journal of Genetics.

The role of Galactose in human health and disease

Zeeshan Iqbal, Noor Ahmad Shaik, N. Shaik, 2012 .

Molecular profiling of melanocortin 4 receptor variants and agouti-related peptide interactions in morbid obese phenotype: a novel paradigm from molecular docking and dynamics simulations

N. Shaik, B. Banaganapalli, Z. Awan, 2022, Biologia.

The genetic association study of TP53 polymorphisms in Saudi obese patients

R. Jansen, N. Shaik, B. Banaganapalli, 2019, Saudi journal of biological sciences.

Her-2/neu status: a neglected marker of prognostication and management of breast cancer patients in India.

M. Srinivasulu, N. Shaik, Q. Hasan, 2013, Asian Pacific journal of cancer prevention : APJCP.

In Silico PCR

Faten Alqahtani, Babajan Banaganapalli, Noor Ahmad Shaik, 2019, Essentials of Bioinformatics, Volume I.

Targeted Molecular Sequencing Revealed Allelic Heterogeneity of BRAF and PTPN11 Genes among Arab Noonan Syndrome Patients

J. Al-Aama, N. Shaik, B. Banaganapalli, 2018, Russian Journal of Genetics.

Expanded Somatic Mutation Spectrum of MED12 Gene in Uterine Leiomyomas of Saudi Arabian Women

N. Shaik, B. Banaganapalli, R. Elango, 2018, Front. Genet..

In Silico Approach to Investigate the Structural and Functional Attributes of Familial Hypercholesterolemia Variants Reported in the Saudi Population

Babajan Banaganapalli, Faisal A. Al-Allaf, Omran M. Rashidi, 2017, J. Comput. Biol..

First Comprehensive In Silico Analysis of the Functional and Structural Consequences of SNPs in Human GalNAc-T1 Gene

Yasir Anwar, Noor Ahmad Shaik, Amir F. Merican, 2014, Comput. Math. Methods Medicine.

Estrogen Receptor-α gene (T/C) Pvu II Polymorphism in Endometriosis and Uterine Fibroids

N. Shaik, Q. Hasan, V. Kodati, 2009, Disease markers.

Polymorphic (CAG)n repeats in the androgen receptor gene: a risk marker for endometriosis and uterine leiomyomas.

N. Shaik, Q. Hasan, V. Kodati, 2009, Hematology/oncology and stem cell therapy.

Driving Forces of Bioinformatics

N. Shaik, B. Banaganapalli, R. Elango, 2019, Essentials of Bioinformatics, Volume II.

Screening of mitochondrial mutations and insertion–deletion polymorphism in gestational diabetes mellitus in the Asian Indian population

N. Shaik, Q. Hasan, P. Rao, 2014, Saudi journal of biological sciences.

A Computational Protein Phenotype Prediction Approach to Analyze the Deleterious Mutations of Human MED12 Gene

Babajan Banaganapalli, Noor Ahmad Shaik, Jumana Y. Al-Aama, 2016, Journal of cellular biochemistry.

Detection of somatic mutations and germline polymorphisms in mitochondrial DNA of uterine fibroids patients.

N. Shaik, Q. Hasan, V. Kodati, 2011, Genetic testing and molecular biomarkers.

Molecular designing, virtual screening and docking study of novel curcumin analogue as mutation (S769L and K846R) selective inhibitor for EGFR

N. Shaik, B. Banaganapalli, P. Verma, 2018, Saudi journal of biological sciences.

Increased frequency of micronuclei in diabetes mellitus patients using pioglitazone and glimepiride in combination.

N. Shaik, Sharique A. Ali, J. Shaik, 2010, Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association.

ACE insertion/deletion genetic polymorphism, serum ACE levels and high dietary salt intake influence the risk of obesity development among the Saudi adult population

R. Jansen, A. Altaf, N. Shaik, 2019, Journal of the Renin-Angiotensin-Aldosterone System: JRAAS.

Molecular modelling and dynamics of CA2 missense mutations causative to carbonic anhydrase 2 deficiency syndrome

Hifaa A. Bokhari, N. Shaik, B. Banaganapalli, 2020, Journal of biomolecular structure & dynamics.

Finding a Needle in a Haystack: Variant Effect Predictor (VEP) Prioritizes Disease Causative Variants from Millions of Neutral Ones

Babajan Banaganapalli, Noor Ahmad Shaik, Ramu Elango, 2019, Essentials of Bioinformatics, Volume II.

Diagnostic Revolution Post-Human Genome Sequence Project: High-Throughput Technologies and Bioinformatics

J. Al-Aama, N. Shaik, B. Banaganapalli, 2019, Essentials of Bioinformatics, Volume II.

Correlation between EGFR Gene Mutations and Lung Cancer: a Hospital-Based Study.

K. Alharbi, N. Shaik, P. Vijayanand, 2015, Asian Pacific journal of cancer prevention : APJCP.

Exome Analysis Identifies a Novel Compound Heterozygous Alteration in TGM1 Gene Leading to Lamellar Ichthyosis in a Child From Saudi Arabia: Case Presentation

J. Al-Aama, N. Shaik, M. Jelani, 2019, Front. Pediatr..

Structural prediction, whole exome sequencing and molecular dynamics simulation confirms p.G118D somatic mutation of PIK3CA as functionally important in breast cancer patients

Noor Ahmad Shaik, Tariq Ahmad Masoodi, Syed Burhan, 2019, Comput. Biol. Chem..

Transcriptome-Based Molecular Networks Uncovered Interplay Between Druggable Genes of CD8+ T Cells and Changes in Immune Cell Landscape in Patients With Pulmonary Tuberculosis

N. Shaik, R. Elango, P. Shetty, 2022, Frontiers in Medicine.

TagSNP approach for HLA risk allele genotyping of Saudi celiac disease patients: effectiveness and pitfalls

J. Al-Aama, N. Shaik, B. Banaganapalli, 2021, Bioscience reports.

Genetic association study of NOD2 and IL23R amino acid substitution polymorphisms in saudi inflammatory bowel disease patients

N. Shaik, R. Elango, M. Mosli, 2021, Journal of King Saud University - Science.

Structural and Molecular Interaction Studies on Familial Hypercholesterolemia Causative PCSK9 Functional Domain Mutations Reveals Binding Affinity Alterations with LDLR

N. Shaik, B. Banaganapalli, Z. Awan, 2020, International Journal of Peptide Research and Therapeutics.

Experimental and computational studies on newly synthesized resveratrol derivative: a new method for cancer chemoprevention and therapeutics?

Babajan Banaganapalli, Noor Ahmad Shaik, Madhusudana Pulaganti, 2013, Omics : a journal of integrative biology.

Enhanced transcription of estrogen receptor α and mitochondrial cytochrome b genes in uterine leiomyomas

N. Shaik, Q. Hasan, V. Kodati, 2011, Gynecological endocrinology : the official journal of the International Society of Gynecological Endocrinology.

Genetic Association from RFLPs to Millions of Variant Markers: Unravelling the Genetic Complexity of Diseases

J. Al-Aama, N. Shaik, B. Banaganapalli, 2019, Essentials of Bioinformatics, Volume II.

RNA-Seq reveals skipping of exon 3 in a breast cancer patient carrying G118D PIK3CA mutation

Tariq Ahmad Masoodi, G. Shafi, N. Shaik, 2020 .

Granulomatous hepatitis in a Saudi child with IL2RA defect: a case report and literature review

N. Shaik, B. Banaganapalli, N. Kamal, 2022, Therapeutic advances in chronic disease.

Down regulated expression of Claudin-1 and Claudin-5 and up regulation of β-catenin: association with human glioma progression.

Mohammad A Kamal, N. Greig, M. Kamal, 2014, CNS & neurological disorders drug targets.

Saudi Familial Hypercholesterolemia Patients With Rare LDLR Stop Gain Variant Showed Variable Clinical Phenotype and Resistance to Multiple Drug Regimen

Omran M. Rashidi, J. Al-Aama, R. Hegele, 2021, Frontiers in Medicine.

Whole exome sequencing identifies rare biallelic ALMS1 missense and stop gain mutations in familial Alström syndrome patients

Omran M. Rashidi, J. Al-Aama, N. Shaik, 2019, Saudi journal of biological sciences.

A novel homozygous ALMS1 protein truncation mutation (c.2938dupA) revealed variable clinical expression among Saudi Alström syndrome patients

J. Al-Aama, N. Shaik, P. Verma, 2020 .

Introduction to Bioinformatics

Babajan Banaganapalli, Noor Ahmad Shaik, N. Shaik, 2019, Essentials of Bioinformatics, Volume I.

Ramadan fasting in Saudi Arabia is associated with altered expression of CLOCK, DUSP and IL-1alpha genes, as well as changes in cardiometabolic risk factors

J. Al-Aama, G. Chrousos, S. Bahijri, 2017, PloS one.

In-Silico Analysis of Inflammatory Bowel Disease (IBD) GWAS Loci to Novel Connections

Babajan Banaganapalli, Noor Ahmad Shaik, Fahad A. Al-Abbasi, 2015, PloS one.

Comprehensive Computational Analysis of GWAS Loci Identifies CCR2 as a Candidate Gene for Celiac Disease Pathogenesis

Babajan Banaganapalli, Omran M. Rashidi, Ramu Elango, 2017, Journal of cellular biochemistry.

Computational Protein Phenotype Characterization of IL10RA Mutations Causative to Early Onset Inflammatory Bowel Disease (IBD)

Babajan Banaganapalli, Saida S. Sadath, Fahad A. Al-Abbasi, 2018, Front. Genet..

Novel de Novo Mutations of the Interleukin-10 Receptor Gene Lead to Infantile Onset Inflammatory Bowel Disease: A Correction.

N. Shaik, F. Al-Abbasi, K. Mohammed, 2017, Journal of Crohn's & colitis.

Assessment of insertion/deletion polymorphism of ACE gene as a genetic risk marker for preeclampsia in pregnant women.

N. Shaik, N. Bondagji, Munazza Gull, 2020, JPMA. The Journal of the Pakistan Medical Association.

Computational approaches for discovering significant microRNAs, microRNA-mRNA regulatory pathways, and therapeutic protein targets in endometrial cancer

N. Shaik, B. Banaganapalli, R. Elango, 2023, Frontiers in Genetics.

Protective Role of Medicinal Herb Anethum Graveolens (Dill) Against Various Human Diseases and Metabolic Disorders

Khalid Rehman Hakeem, N. Shaik, B. Banaganapalli, 2019, Plant and Human Health, Volume 3.

Combining machine learning and structure-based approaches to develop oncogene PIM kinase inhibitors

N. Shaik, B. Banaganapalli, Haifa S. Almukadi, 2023, Frontiers in Chemistry.

Assessing the role of serum prolactin levels and coding region somatic mutations of the prolactin gene in Saudi uterine leiomyoma patients

N. Shaik, B. Banaganapalli, R. Elango, 2020 .

Multilevel systems biology analysis of lung transcriptomics data identifies key miRNAs and potential miRNA target genes for SARS-CoV-2 infection

N. Shaik, B. Banaganapalli, R. Elango, 2021, Computers in Biology and Medicine.

Evaluation of Gestational Diabetes Mellitus Risk in South Indian Women Based on MTHFR (C677T) and FVL (G1691A) Mutations

N. Shaik, Q. Hasan, P. Rao, 2015, Front. Pediatr..

Rare variant burden analysis from exomes of three consanguineous families reveals LILRB1 and PRSS3 as potential key proteins in inflammatory bowel disease pathogenesis

N. Shaik, B. Banaganapalli, R. Elango, 2023, Frontiers in Medicine.

Integrative global co-expression analysis identifies Key MicroRNA-target gene networks as key blood biomarkers for obesity.

N. Shaik, B. Banaganapalli, R. Elango, 2022, Minerva medica.

Genome-Wide Association Study-Guided Exome Rare Variant Burden Analysis Identifies IL1R1 and CD3E as Potential Autoimmunity Risk Genes for Celiac Disease

N. Shaik, B. Banaganapalli, R. Elango, 2022, Frontiers in Pediatrics.

Integrative system biology and mathematical modeling of genetic networks identifies shared biomarkers for obesity and diabetes.

N. Shaik, B. Banaganapalli, R. Elango, 2022, Mathematical biosciences and engineering : MBE.

Dissecting the Role of NF-κb Protein Family and Its Regulators in Rheumatoid Arthritis Using Weighted Gene Co-Expression Network

N. Shaik, B. Banaganapalli, R. Elango, 2019, Front. Genet..

Evidence for the presence of somatic mitochondrial DNA mutations in right atrial appendage tissues of coronary artery disease patients

J. Al-Aama, N. Shaik, B. Banaganapalli, 2014, Molecular Genetics and Genomics.

Paget’s disease: a review of the epidemiology, etiology, genetics, and treatment

N. Shaik, B. Banaganapalli, R. Elango, 2023, Frontiers in Genetics.

Potential Biomarkers for Parkinson Disease from Functional Enrichment and Bioinformatic Analysis of Global Gene Expression Patterns of Blood and Substantia Nigra Tissues

N. Shaik, B. Banaganapalli, R. Elango, 2023, Bioinformatics and biology insights.

Distribution of CYP2C8 and CYP2C9 amino acid substitution alleles in South Indian diabetes patients: A genotypic and computational protein phenotype study

N. Shaik, B. Banaganapalli, R. Elango, 2017, Clinical and experimental pharmacology & physiology.

Gender-specific associations between insulin resistance, hypertension, and markers of inflammation among adult Saudis with and without diabetes mellitus type 2.

N. Shaik, O. Al-Attas, N. Al-Daghri, 2010, Advances in medical sciences.

Molecular differential analysis of uterine leiomyomas and leiomyosarcomas through weighted gene network and pathway tracing approaches

N. Shaik, B. Banaganapalli, R. Elango, 2021, Systems biology in reproductive medicine.

Evidence for the presence of somatic mitochondrial DNA mutations in right atrial appendage tissues of coronary artery disease patients

J. Al-Aama, N. Shaik, B. Banaganapalli, 2014, Zeitschrift für Induktive Abstammungs- und Vererbungslehre.

Structural and functional characterization of pathogenic non- synonymous genetic mutations of human insulin-degrading enzyme by in silico methods.

Babajan Banaganapalli, Mohammed Kaleemuddin, Nabeel Bondagji, 2014, CNS & neurological disorders drug targets.

Variations in the GST activity are associated with single and combinations of GST genotypes in both male and female diabetic patients

J. Al-Aama, N. Shaik, D. Rao, 2013, Molecular Biology Reports.

Exploration of CAG triplet repeat in nontranslated region of SCA12 gene

N. Shaik, Q. Hasan, S. Poornima, 2016, Journal of Genetics.

Exome sequencing and metabolomic analysis of a chronic kidney disease and hearing loss patient family revealed RMND1 mutation induced sphingolipid metabolism defects

Omran M. Rashidi, J. Al-Aama, M. Razeeth, 2019, Saudi journal of biological sciences.

Protein structural insights into a rare PCSK9 gain-of-function variant (R496W) causing familial hypercholesterolemia in a Saudi family: whole exome sequencing and computational analysis

N. Shaik, B. Banaganapalli, R. Elango, 2023, Frontiers in physiology.

Identification and functional characterization of 2 Rare LDLR stop gain variants (p.C231* and p.R744*) in Saudi familial hypercholesterolemia patients.

N. Shaik, B. Banaganapalli, F. Al-Allaf, 2022, Panminerva medica.

Understanding the Regulatory Features of Co-regulated Genes Using Distant Regulatory Elements (DiRE) Genomic Tool in Health and Disease

N. Shaik, B. Banaganapalli, R. Elango, 2019, Essentials of Bioinformatics, Volume II.

Introduction to Biological Databases

N. Shaik, B. Banaganapalli, R. Elango, 2019, Essentials of Bioinformatics, Volume I.

Molecular Docking

N. Shaik, B. Banaganapalli, R. Elango, 2019, Essentials of Bioinformatics, Volume I.