Hong Li

发表

Interconnected Network Motifs Control Podocyte Morphology and Kidney Function

Ravi Iyengar, Avi Ma’ayan, Evren U. Azeloglu, 2014, Science Signaling.

Thioredoxin 1-mediated Post-translational Modifications: Reduction, Transnitrosylation, Denitrosylation, and Related Proteomics Methodologies I. Introduction Ii. Trx Systems A. Trx1 and Related Proteins B. Ptms of Trx1 Iii. Trx Regulation of Target Proteins by Disulfide Bond Reduction A. Trx Regulat

V. Gladyshev, J. Sadoshima, M. Jain, 2022 .

Sulfonation of the resolving cysteine in human peroxiredoxin 1: A comprehensive analysis by mass spectrometry

Hong Li, Lin Yan, Changgong Wu, 2017, Free radical biology & medicine.

Redox Regulatory Mechanism of Transnitrosylation by Thioredoxin

J. Sadoshima, M. Jain, Hong Li, 2010, Molecular & Cellular Proteomics.

Cell shape information is transduced through tension-independent mechanisms

R. Iyengar, J. Hone, J. He, 2017, Nature Communications.

Analysis of Post-Translational Modifications and Proteolysis in Neuroscience

Jennifer E. Grant, Hong Li, Jennifer E. Grant, 2016, Neuromethods.

Proteomic strategies in multiple sclerosis and its animal models

S. Elkabes, Hong Li, 2007, Proteomics. Clinical applications.

Quantitative Proteomic Analysis of Formalin Fixed Paraffin Embedded Oral HPV Lesions from HIV Patients.

Tong Liu, M. Jain, Hong Li, 2008, The open proteomics journal.

LIM-Nebulette Reinforces Podocyte Structural Integrity by Linking Actin and Vimentin Filaments.

J. Wong, J. Hone, W. Janssen, 2020, Journal of the American Society of Nephrology : JASN.

Identifying Citrullination Sites by Mass Spectrometry

Jennifer E. Grant, Hong Li, Jennifer E. Grant, 2014 .

Protein S Protects against Podocyte Injury in Diabetic Nephropathy.

W. Jia, T. Weber, Kyung Lee, 2018, Journal of the American Society of Nephrology : JASN.

Selective cysteines oxidation in soluble guanylyl cyclase catalytic domain is involved in NO activation.

V. Kholodovych, Hong Li, A. Beuve, 2020, Free radical biology & medicine.

Mapping Soluble Guanylyl Cyclase and Protein Disulfide Isomerase Regions of Interaction

V. Kholodovych, M. Jain, Hong Li, 2015, PloS one.

A redox-dependent mechanism for regulation of AMPK activation by Thioredoxin1 during energy starvation.

J. Sadoshima, Hong Li, P. Zhai, 2013, Cell metabolism.

Purification and mass spectrometric analysis of the κ opioid receptor

Hong Li, P. Yadav, K. Wannemacher, 2005, Brain Research.

A strategy for direct identification of protein S-nitrosylation sites by quadrupole time-of-flight mass spectrometry

Tong Liu, Yan Wang, Hong Li, 2008, Journal of the American Society for Mass Spectrometry.

Biotin Switch Processing and Mass Spectrometry Analysis of S-Nitrosated Thioredoxin and Its Transnitrosation Targets.

Hong Li, Lin Yan, A. Beuve, 2018, Methods in molecular biology.

Identification of novel S-nitrosation sites in soluble guanylyl cyclase, the nitric oxide receptor.

V. Kholodovych, M. Jain, Hong Li, 2016, Journal of proteomics.

Distinction of thioredoxin transnitrosylation and denitrosylation target proteins by the ICAT quantitative approach.

J. Sadoshima, M. Jain, Hong Li, 2011, Journal of proteomics.

Morphine Regulated Synaptic Networks Revealed by Integrated Proteomics and Network Analysis*

Avi Ma’ayan, Hong Li, L. Devi, 2015, Molecular & Cellular Proteomics.

Nutrient starvation promotes condensin loading to maintain rDNA stability

C. Tsang, Hong Li, X. S. Zheng, 2007, The EMBO journal.

mTORC 2 Regulates Cardia c Response to Stress by Inhibiting MST 1 Graphical Abstract Highlights

M. Volpe, Y. Maejima, J. Sadoshima, 2015 .

Design and properties of efficient tRNA:EF-Tu FRET system for studies of ribosomal translation.

Sanjay Tyagi, W. Mandecki, E. Goldman, 2013, Protein engineering, design & selection : PEDS.

Plasminogenuria is associated with podocyte injury, edema, and kidney dysfunction in incident glomerular disease

M. Egerman, E. Azeloglu, Hong Li, 2019, medRxiv.

Prevention of Connexin43 remodeling protects against duchenne muscular dystrophy cardiomyopathy.

G. Fishman, Lai-Hua Xie, X. Wehrens, 2020, The Journal of clinical investigation.

Prevention of Connexin 43 remodeling protects against Duchenne muscular 2 dystrophy cardiomyopathy

Lai-Hua Xie, X. Wehrens, D. Fraidenraich, 2019 .

Ciliary neurotrophic factor (CNTF) plus soluble CNTF receptor α increases cyclooxygenase-2 expression, PGE2 release and interferon-γ-induced CD40 in murine microglia

S. Levison, Hsiao-Wen Lin, M. Jain, 2009, Journal of Neuroinflammation.

An alternative mitophagy pathway mediated by Rab9 protects the heart against ischemia

S. Ichinose, M. Isobe, D. Fraidenraich, 2019, The Journal of clinical investigation.

Proteomic mechanisms of cardioprotection during mammalian hibernation in woodchucks, Marmota monax.

S. Vatner, D. Vatner, M. Jain, 2013, Journal of proteome research.

Altered proteolytic events in experimental autoimmune encephalomyelitis discovered by iTRAQ shotgun proteomics analysis of spinal cord

S. Elkabes, M. Jain, Hong Li, 2009, Proteome Science.

Glycogen Synthase Kinase-3α Promotes Fatty Acid Uptake and Lipotoxic Cardiomyopathy.

B. Tian, J. Sadoshima, Hong Li, 2019, Cell metabolism.

Purification and mass spectrometric analysis of the δ opioid receptor

Hong Li, R. Howells, K. Christoffers, 2005 .

Soluble guanylyl cyclase mediates noncanonical nitric oxide signaling by nitrosothiol transfer under oxidative stress

Hong Li, A. Beuve, Changgong Wu, 2022, Redox biology.

Whole cell response to receptor stimulation involves many deep and distributed subcellular biochemical processes

J. Goldfarb, G. Jayaraman, M. Jain, 2022, The Journal of biological chemistry.

Upregulation of Nox4 by Hypertrophic Stimuli Promotes Apoptosis and Mitochondrial Dysfunction in Cardiac Myocytes

J. Sadoshima, Hong Li, Cexiong Fu, 2010, Circulation research.

The disulfide isomerase ERp72 supports arterial thrombosis in mice.

L. Rauova, D. Essex, M. Poncz, 2017, Blood.

Purification and mass spectrometric analysis of the mu opioid receptor.

S. Keenan, Hong Li, R. Howells, 2003, Brain research. Molecular brain research.

Role of the translationally controlled tumor protein in DNA damage sensing and repair

E. Azzam, S. M. de Toledo, D. Pain, 2012, Proceedings of the National Academy of Sciences.

IDH2-mediated regulation of the biogenesis of the oxidative phosphorylation system

R. Kitsis, Edward Owusu-Ansah, Hong Li, 2022, Science advances.

Tyrosine kinase FYN negatively regulates NOX4 in cardiac remodeling.

J. Sadoshima, Hong Li, P. Zhai, 2016, The Journal of clinical investigation.

A Role for Basigin in Toxoplasma gondii Infection

Hong Li, E. Weerapana, A. Punetha, 2022, Infection and immunity.

THROMBOSIS AND HEMOSTASIS The disul fi de isomerase ERp 72 supports arterial thrombosis in mice

L. Rauova, D. Essex, M. Poncz, 2017 .

PERM1 regulates energy metabolism in the heart via ERRα/PGC−1α axis

Y. Saijoh, Hong Li, S. Oka, 2022, Frontiers in Cardiovascular Medicine.

Potential protein biomarkers for burning mouth syndrome discovered by quantitative proteomics

Eoon Hye Ji, Shen Hu, Hong Li, 2017, Molecular pain.

Structural and functional roles of KCC2 in developing cortex

Hong Li, 2008 .

Externalized Glycolytic Enzymes Are Novel, Conserved, and Early Biomarkers of Apoptosis*

R. Birge, M. Jain, Hong Li, 2012, The Journal of Biological Chemistry.

Identification and characterization of Runx2 phosphorylation sites involved in matrix metalloproteinase‐13 promoter activation

N. Selvamurugan, E. Shimizu, Hong Li, 2009, FEBS Letters.

Identification of differentially expressed proteins in experimental autoimmune encephalomyelitis (EAE) by proteomic analysis of the spinal cord.

Stella Elkabes, S. Elkabes, Hong Li, 2007, Journal of proteome research.

Thiol-redox proteins interact with soluble guanylyl cyclase and modulate its activity

M. Jain, Hong Li, A. Beuve, 2013, BMC Pharmacology and Toxicology.

MicroRNA-7 Protects against 1-Methyl-4-Phenylpyridinium-Induced Cell Death by Targeting RelA

Doo Chul Choi, M. Jain, Hong Li, 2014, The Journal of Neuroscience.

A multiplexed proteomics approach to differentiate neurite outgrowth patterns

R. Birge, Jun Hu, Veera D’mello, 2006, Journal of Neuroscience Methods.

A Redox-Dependent Pathway for Regulating Class II HDACs and Cardiac Hypertrophy

S. Vatner, J. Sadoshima, J. Molkentin, 2008, Cell.

Downregulation of a Dorsal Root Ganglion‐Specifically Enriched Long Noncoding RNA is Required for Neuropathic Pain by Negatively Regulating RALY‐Triggered Ehmt2 Expression

Yun-juan Chang, Y. Tao, Hong Li, 2021, Advanced science.

A Rab5 endosomal pathway mediates Parkin-dependent mitochondrial clearance

Mark Ellisman, G. Dorn, Å. Gustafsson, 2017, Nature Communications.

Nutrient regulates Tor1 nuclear localization and association with rDNA promoter

C. Tsang, X. Zheng, Hong Li, 2006, Nature.

Mst1 promotes cardiac myocyte apoptosis through phosphorylation and inhibition of Bcl-xL.

Y. Maejima, J. Sadoshima, M. Jain, 2014, Molecular cell.

Selective regulation of gene expression by nuclear factor 110, a member of the NF90 family of double-stranded RNA-binding proteins.

M. Mathews, P. Kao, Hong Li, 2003, Journal of molecular biology.

The human brain mannose 6‐phosphate glycoproteome: A complex mixture composed of multiple isoforms of many soluble lysosomal proteins

Hong Li, D. Sleat, P. Lobel, 2005, Proteomics.

MicroRNA-7 activates Nrf2 pathway by targeting Keap1 expression.

Doo Chul Choi, M. Jain, Hong Li, 2015, Free radical biology & medicine.

Identification of thioredoxin target protein networks in cardiac tissues of a transgenic mouse.

Hong Li, Cexiong Fu, Tong Liu, 2013, Methods in molecular biology.

Nectin-like 4 Complexes with Choline Transporter-like Protein-1 and Regulates Schwann Cell Choline Homeostasis and Lipid Biogenesis in Vitro*

P. Maurel, M. Jain, Hong Li, 2017, The Journal of Biological Chemistry.

Characterization of the biochemical and biophysical properties of the phosphatidylserine receptor (PS-R) gene product

R. Birge, Hong Li, Tong Liu, 2007, Molecular and Cellular Biochemistry.

iTRAQ Proteomics Profiling of Regulatory Proteins During Oligodendrocyte Differentiation

T. Wood, M. Jain, Hong Li, 2012 .

Proteomic identification of novel targets regulated by the mammalian target of rapamycin pathway during oligodendrocyte differentiation

T. Wood, W. A. Tyler, M. Jain, 2011, Glia.

Mst1 inhibits autophagy by promoting the interaction between Beclin1 and Bcl-2

M. Isobe, D. Lim, Y. Maejima, 2013, Nature Medicine.

Mst1 inhibits autophagy by promoting Beclin1-Bcl-2 interaction

M. Isobe, D. Lim, Y. Maejima, 2013, Nature medicine.

Iterative Tyrosine Phosphorylation Controls Non-canonical Domain Utilization in Crk

P. Hornbeck, R. Birge, C. Kalodimos, 2014, Oncogene.

Cyclophilin A Inhibitor Debio-025 Targets Crk, Reduces Metastasis, and Induces Tumor Immunogenicity in Breast Cancer

R. Birge, C. Kalodimos, E. Azzam, 2020, Molecular Cancer Research.

Transactivation of Abl by the Crk II adapter protein requires a PNAY sequence in the Crk C-terminal SH3 domain

J Eduardo Fajardo, Andras Fiser, Sukhwinder Singh, 2005, Oncogene.

Identification and Validation of Mannose 6-Phosphate Glycoproteins in Human Plasma Reveal a Wide Range of Lysosomal and Non-lysosomal Proteins*S

Hong Li, D. Sleat, Haiyan Zheng, 2006, Molecular & Cellular Proteomics.

Whole cell response to receptor stimulation involves many deep and distributed subcellular processes

R. Iyengar, J. Goldfarb, G. Jayaraman, 2018 .

Cannabinoid 1-Receptor regulation of deep and distributed subcellular processes enables neurite outgrowth

R. Iyengar, J. Goldfarb, Hong Li, 2018 .

Comprehensive identification of protein disulfide bonds with pepsin/trypsin digestion, Orbitrap HCD and Spectrum Identification Machine.

Hong Li, Chuanlong Cui, Tong Liu, 2019, Journal of proteomics.

Expression and purification of the dihydrolipoamide acetyltransferase and dihydrolipoamide dehydrogenase subunits of the Escherichia coli pyruvate dehydrogenase multienzyme complex: a mass spectrometric assay for reductive acetylation of dihydrolipoamide acetyltransferase.

Hong Li, F. Jordan, N. Nemeria, 2003, Protein expression and purification.

Heterodimerization with Small Maf Proteins Enhances Nuclear Retention of Nrf2 via Masking the Neszip Motif

A. Kong, Jung-Hwan Kim, Hong Li, 2022 .

Mass Spectrometric Analysis of SOX11-Binding Proteins in Head and Neck Cancer Cells Demonstrates the Interaction of SOX11 and HSP90α.

Shen Hu, Hong Li, Tong Liu, 2017, Journal of proteome research.

mTORC2 regulates cardiac response to stress by inhibiting MST1.

M. Volpe, Y. Maejima, J. Sadoshima, 2015, Cell reports.

Proteomic identification of immunoproteasome accumulation in formalin-fixed rodent spinal cords with experimental autoimmune encephalomyelitis.

S. Elkabes, M. Jain, Hong Li, 2012, Journal of proteome research.

Identification of Novel Nuclear Targets of Human Thioredoxin 1*

J. Sadoshima, A. Kong, M. Jain, 2014, Molecular & Cellular Proteomics.

PKA and CDK5 can phosphorylate specific serines on the intracellular domain of podoplanin (PDPN) to inhibit cell motility.

W. Miller, Hong Li, G. Goldberg, 2015, Experimental cell research.

Elucidation of Thioredoxin Target Protein Networks in Mouse*

J. Sadoshima, Hong Li, P. Zhai, 2009, Molecular & Cellular Proteomics.

Disruption of podocyte cytoskeletal biomechanics by dasatinib leads to nephrotoxicity

J G Coen van Hasselt, Jia-Jye Lee, Evren U Azeloglu, 2019, Nature Communications.

Optimized proteomic analysis of a mouse model of cerebellar dysfunction using amine‐specific isobaric tags

Yan Li, Stella Elkabes, S. Elkabes, 2006, Proteomics.

iTRAQ-based shotgun neuroproteomics.

Hong Li, Jun Hu, Tong Liu, 2009, Methods in molecular biology.

A role for Saccharomyces cerevisiae Centrin (Cdc31) in mitochondrial function and biogenesis

Hong Li, Li Chen, K. Madura, 2018, Molecular microbiology.

Purkinje cell dysfunction and delayed death in plasma membrane calcium ATPase 2-heterozygous mice

Stella Elkabes, S. Elkabes, M. Jain, 2012, Molecular and Cellular Neuroscience.

ALTERATIONS IN THE CEREBELLUM OF THE PLASMA MEMBRANE CALCIUM ATPASE 2 ( PMCA 2 )-NULL MOUSE INDICATE ABNORMALITIES IN PURKINJE NEURONS

S. Elkabes, L. Deng, Hong Li, 2008 .

Molecular alterations in the cerebellum of the plasma membrane calcium ATPase 2 (PMCA2)-null mouse indicate abnormalities in Purkinje neurons

S. Elkabes, L. Deng, Hong Li, 2007, Molecular and Cellular Neuroscience.

Cleavage Site Selection within a Folded Substrate by the ATP-dependent Lon Protease*[boxs]

Z. Granot, Hong Li, J. Orly, 2005, Journal of Biological Chemistry.

Biochemical characterization of Trypanosoma brucei RNA polymerase II.

Hong Li, Tong Liu, V. Bellofatto, 2006, Molecular and biochemical parasitology.

Dissecting the concordant and disparate roles of NDUFAF3 and NDUFAF4 in mitochondrial complex I biogenesis

B. Mishra, Edward Owusu-Ansah, Hong Li, 2021, iScience.

Bimodal occurrence of aspartoacylase in myelin and cytosol of brain

R. Matalon, Hong Li, R. Ledeen, 2007, Journal of neurochemistry.

Post-translational modifications of connexin26 revealed by mass spectrometry.

Hong Li, A. Harris, S. Bian, 2009, The Biochemical journal.

Master redox regulator Trx1 upregulates SMYD1 & modulates lysine methylation.

J. Sadoshima, M. Jain, Hong Li, 2015, Biochimica et biophysica acta.

Inhibitory Peptide of Soluble Guanylyl Cyclase/Trx1 Interface Blunts the Dual Redox Signaling Functions of the Complex

Hong Li, A. Beuve, Waqas Younis, 2023, Antioxidants.

Guanylyl cyclase sensitivity to nitric oxide is protected by a thiol oxidation-driven interaction with thioredoxin-1

Annie Beuve, Vladyslav Kholodovych, V. Kholodovych, 2017, The Journal of Biological Chemistry.

Potential Roles of Accelerated Dopamine Oxidation, Altered Glutathione Metabolism, 5-S-Cysteinyl-Dopamine and its Oxidative Metabolites in the Pathogenesis of Parkinson’s Disease

Hong Li, F. Cheng, G. Dryhurst, 2000 .

Identification of Bax-interacting proteins in oligodendrocyte progenitors during glutamate excitotoxicity and perinatal hypoxia–ischemia

S. Levison, T. Wood, M. Jain, 2013, ASN neuro.

Aberrant regulation of choline metabolism by mitochondrial electron transport system inhibition in neuroblastoma cells

M. Jain, Hong Li, A. Baykal, 2008, Metabolomics.

Proteomic analysis of mitochondrial biogenesis in cardiomyocytes differentiated from human induced pluripotent stem cells.

Lai-Hua Xie, D. Fraidenraich, J. Sadoshima, 2020, American journal of physiology. Regulatory, integrative and comparative physiology.

Somatodendritic accumulation of misfolded SOD1-L126Z in motor neurons mediates degeneration: alphaB-crystallin modulates aggregation.

D. Borchelt, N. Jenkins, Hong Li, 2005, Human molecular genetics.

Cell shape information is transduced through tension-independent mechanisms

R. Iyengar, J. Hone, J. He, 2017, Nature Communications.

Post-translational modifications in the rat lumbar spinal cord in experimental autoimmune encephalomyelitis.

S. Elkabes, M. Jain, Hong Li, 2007, Journal of proteome research.

Amyotrophic lateral sclerosis: Protein chaperone dysfunction revealed by proteomic studies of animal models

S. Elkabes, M. Jain, Hong Li, 2008, Proteomics. Clinical applications.

Quantitative analysis of redox-sensitive proteome with DIGE and ICAT.

J. Sadoshima, Hong Li, Tong Liu, 2008, Journal of proteome research.

The RNA-binding protein RBP42 regulates cellular energy metabolism in mammalian-infective Trypanosoma brucei

Hong Li, Tong Liu, Seema Husain, 2021, bioRxiv.

Cell-deposited matrix improves retinal pigment epithelium survival on aged submacular human Bruch's membrane.

M. Zarbin, Hong Li, Tong Liu, 2011, Investigative ophthalmology & visual science.

In vivo space radiation-induced non-targeted responses: late effects on molecular signaling in mitochondria.

E. Azzam, S. M. de Toledo, M. Jain, 2011, Current molecular pharmacology.

Host Biomarkers of Invasive Pulmonary Aspergillosis To Monitor Therapeutic Response

M. Jain, Hong Li, T. Walsh, 2014, Antimicrobial Agents and Chemotherapy.

Profiling the Aspergillus fumigatus Proteome in Response to Caspofungin

M. Jain, Hong Li, D. Perlin, 2010, Antimicrobial Agents and Chemotherapy.

Myelin Lipid Abnormalities in the Aspartoacylase-Deficient Tremor Rat

T. Serikawa, M. Jain, Hong Li, 2008, Neurochemical Research.

Mass Spectrometric Analysis of SOX 11-Binding Proteins in Head and Neck Cancer Cells Demonstrates the Interaction of SOX 11 and HSP 90 α

Shen Hu, Hong Li, Tong Liu, 2017 .

Functional proteomics approaches for the identification of transnitrosylase and denitrosylase targets.

Hong Li, A. Beuve, Changgong Wu, 2013, Methods.

Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity

J. Goldfarb, M. Birtwistle, E. Sobie, 2022, Scientific data.

Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity

R. Iyengar, J. Goldfarb, M. Birtwistle, 2020, Scientific Data.

The Proteomic Signature of Aspergillus fumigatus During Early Development*

M. Jain, Hong Li, D. Perlin, 2011, Molecular & Cellular Proteomics.

Two Bioactive Molecular Weight Fractions of a Conditioned Medium Enhance RPE Cell Survival on Age-Related Macular Degeneration and Aged Bruch's Membrane

M. Zarbin, Hong Li, Tong Liu, 2016, Translational vision science & technology.

A sensory neuron-specific long noncoding RNA reduces neuropathic pain by rescuing KCNN1 expression.

Y. Tao, Hong Li, Shaogen Wu, 2023, Brain : a journal of neurology.

Ciliary neurotrophic factor (CNTF) plus soluble CNTF receptor alpha increases cyclooxygenase-2 expression, PGE2 release and interferon-gamma-induced CD40 in murine microglia.

S. Levison, M. Jain, Hong Li, 2009, Journal of Neuroinflammation.

A multidimensional approach to an in-depth proteomics analysis of transcriptional regulators in neuroblastoma cells

M. Jain, Hong Li, Qing Li, 2013, Journal of Neuroscience Methods.

S-Nitrosylation in Organs of Mice Exposed to Low or High Doses of γ-Rays: The Modulating Effect of Iodine Contrast Agent at a Low Radiation Dose

E. Azzam, S. M. de Toledo, Hong Li, 2015, Proteomes.