S. Ellis

发表

Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism

Shannon E. Ellis, J. Bader, D. Arking, 2014, Nature Communications.

Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells

Shannon E. Ellis, B. Langmead, A. Pandey, 2019, Proteomics.

Improving the value of public RNA-seq expression data by phenotype prediction

Shannon E. Ellis, J. Leek, A. Jaffe, 2017, bioRxiv.

Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder

Shannon E. Ellis, Shan V Andrews, A. Feinberg, 2016, Nature Communications.

RNA-Seq optimization with eQTL gold standards

Andrew B West, Simone Gupta, Shannon E. Ellis, 2013, BMC Genomics.

RNA-Seq optimization with gold standards.

Shannon E. Ellis, J. Bader, D. Arking, 2014 .

Transcriptome analysis of cortical tissue reveals shared sets of downregulated genes in autism and schizophrenia

Shannon E. Ellis, D. Arking, S. Ellis, 2016, bioRxiv.

Transcriptome Analysis of Cortical Tissue Reveals Shared Sets of Down-Regulated Genes in Autism and Schizophrenia

D. Arking, S. Ellis, A. West, 2016, bioRxiv.

Exaggerated CpH methylation in the autism-affected brain

Shannon E. Ellis, D. Arking, Simone Gupta, 2016, bioRxiv.

Reproducible RNA-seq analysis using recount2

Jeffrey T Leek, Leonardo Collado-Torres, Abhinav Nellore, 2017, Nature Biotechnology.

Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.

Shannon E. Ellis, Judy H. Cho, J. Rioux, 2015, Gastroenterology.

recount-brain: a curated repository of human brain RNA-seq datasets metadata

Sean Davis, Leonardo Collado-Torres, Andrew E. Jaffe, 2019, bioRxiv.

The role of mutations associated with familial neurodegenerative disorders on blood–brain barrier function in an iPSC model

Shannon E. Ellis, J. Rothstein, P. Searson, 2019, Fluids and Barriers of the CNS.

How to Share Data for Collaboration

Jeffrey T. Leek, Shannon E. Ellis, J. Leek, 2018, The American statistician.

Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder

A. Feinberg, I. Hertz-Picciotto, D. Arking, 2016, bioRxiv.

recount: A large-scale resource of analysis-ready RNA-seq expression data

Leonardo Collado-Torres, Andrew E. Jaffe, Kasper Daniel Hansen, 2016, bioRxiv.