M. Filosi

发表

Differential Network Analysis and Graph Classification: A Glocal Approach

C. Furlanello, Giuseppe Jurman, S. Riccadonna, 2016, 1602.00467.

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

David P. Kreil, Paweł P. Łabaj, C. Furlanello, 2014, Nature Biotechnology.

Functional annotation of rare structural variation in the human brain

Kelsey S. Montgomery, P. Sullivan, L. Klei, 2020, Nature Communications.

The Italian autism network (ITAN): a resource for molecular genetics and biomarker investigations

P. Muglia, E. Trabetti, E. Domenici, 2018, bioRxiv.

Stability Indicators in (biological) network inference

Cesare Furlanello, Riccadonna Samantha, Michele Filosi, 2013 .

Natural SINEUP RNAs in Autism Spectrum Disorders: RAB11B-AS1 Dysregulation in a Neuronal CHD8 Suppression Model Leads to RAB11B Protein Increase

S. Gustincich, E. Domenici, T. Tebaldi, 2021, Frontiers in Genetics.

Large eQTL meta-analysis reveals differing patterns between cerebral cortical and cerebellar brain regions

Benjamin A. Logsdon, Kara H. Woo, Anna K. Greenwood, 2020, Scientific Data.

Global landscape and genetic regulation of RNA editing in cortical samples from individuals with schizophrenia

Kelsey S. Montgomery, David Bruce Lewis, L. Klei, 2019, Nature Neuroscience.

Population-level variation in enhancer expression identifies disease mechanisms in the human brain

Kelsey S. Montgomery, L. Klei, J. Buxbaum, 2022, Nature Genetics.

The person-to-person transmission landscape of the gut and oral microbiomes

T. Spector, Edoardo Pasolli, P. Manghi, 2023, Nature.

The HIM glocal metric and kernel for network comparison and classification

Cesare Furlanello, Giuseppe Jurman, Samantha Riccadonna, 2012, 2015 IEEE International Conference on Data Science and Advanced Analytics (DSAA).

Stability Indicators in Network Reconstruction

Cesare Furlanello, Giuseppe Jurman, Samantha Riccadonna, 2012, PloS one.

minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers

Cesare Furlanello, Giuseppe Jurman, Davide Albanese, 2012, Bioinform..

A Machine Learning Pipeline for Identification of Discriminant Pathways

Cesare Furlanello, Annalisa Barla, Giuseppe Jurman, 2014 .

Evaluating sources of variability in pathway profiling

A. Barla, G. Jurman, C. Furlanello, 2012, 1201.3216.

A Machine Learning Pipeline for Discriminant Pathways Identification

Cesare Furlanello, Annalisa Barla, Giuseppe Jurman, 2011, CIBB.

DTW-MIC Coexpression Networks from Time-Course Data

Cesare Furlanello, Giuseppe Jurman, Samantha Riccadonna, 2012, PloS one.

Increased Levels of the Parkinson’s Disease-Associated Gene ITPKB Correlate with Higher Expression Levels of α-Synuclein, Independent of Mutation Status

V. Baekelandt, P. Pramstaller, A. Lavdas, 2023, International journal of molecular sciences.

Transcriptome signatures from discordant sibling pairs reveal changes in peripheral blood immune cell composition in Autism Spectrum Disorder

P. Muglia, R. Tancredi, E. Trabetti, 2020, Translational Psychiatry.

Relationship between collagen fibril diameters and body size

M. Filosi, F. Pilotto, 1977, Cell and Tissue Research.

Transcriptome analysis of the zebrafish atoh7−/− Mutant, lakritz, highlights Atoh7‐dependent genetic networks with potential implications for human eye diseases

Michael P. Eichenlaub, J. Ngai, E. Domenici, 2020, bioRxiv.

Candidate biomarkers from the integration of methylation and gene expression in discordant autistic sibling pairs

S. Buono, P. Muglia, R. Tancredi, 2023, Translational Psychiatry.

Stability in GRN Inference.

Cesare Furlanello, Giuseppe Jurman, Samantha Riccadonna, 2018, Methods in molecular biology.

Biomarkers for response in major depression: comparing paroxetine and venlafaxine from two randomised placebo-controlled clinical studies

E. Domenici, L. Carboni, M. Filosi, 2019, Translational Psychiatry.

Exploratory analysis of L1 retrotransposons expression in autism

S. Gustincich, E. Domenici, R. Sanges, 2023, Molecular Autism.

Graph metrics as summary statistics for Approximate Bayesian Computation with application to network model parameter estimation

Kenneth N. Brown, Damien Fay, Andrew W. Moore, 2015, J. Complex Networks.

ReNette: a web-infrastructure for reproducible network analysis

Cesare Furlanello, Giuseppe Jurman, Samantha Riccadonna, 2014, bioRxiv.

Functional annotation of rare structural variation in the human brain

Ryan L. Collins, Kelsey S. Montgomery, L. Klei, 2019, Nature Communications.

Large-scale metagenomic analysis of oral microbiomes reveals markers for autism spectrum disorders

N. Segata, F. Asnicar, Moreno Zolfo, 2024, Nature communications.