Ellen Li

发表

Disease phenotype and genotype are associated with shifts in intestinal‐associated microbiota in inflammatory bowel diseases

N. Pace, N. Harpaz, R. Sartor, 2011, Inflammatory bowel diseases.

Integrated metagenomic and bile acid metabolomic analysis of human fecal microbiota transplantation for recurrent Clostridioides difficile and/or inflammatory bowel diseases.

Jie Yang, E. Pamer, J. Cross, 2022, medRxiv.

Comparative genetic pathway analysis using structural equation Modeling

Xiao Wu, Wei Zhu, Hongyan Chen, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

F. James Rohlf, Tianyi Zhang, Ellen Li, 2012, PloS one.

An Ileal Crohn's Disease Gene Signature Based on Whole Human Genome Expression Profiles of Disease Unaffected Ileal Mucosal Biopsies

T. Dassopoulos, B. Song, Tianyi Zhang, 2012, PloS one.

A Modular Organization of the Human Intestinal Mucosal Microbiota and Its Association with Inflammatory Bowel Disease

Rob Knight, James Borneman, Ellen Li, 2013, PloS one.

Comparative analysis of microbiome measurement platforms using latent variable structural equation modeling

Xiao Wu, Wei Zhu, Ellen Li, 2013, BMC Bioinformatics.

Influence of Crohn’s disease related polymorphisms in innate immune function on ileal microbiome

N. Davidson, R. Sartor, Xuefeng Wang, 2019, PloS one.

Comparison of Fecal Microbiota in Children with Autism Spectrum Disorders and Neurotypical Siblings in the Simons Simplex Collection

D. Frank, C. Robertson, Wei Zhu, 2015, PloS one.

Investigating the biological and clinical significance of human dysbioses.

Wei Zhu, Ellen Li, R Balfour Sartor, 2011, Trends in microbiology.

Inflammatory Bowel Diseases Phenotype, C. difficile and NOD2 Genotype Are Associated with Shifts in Human Ileum Associated Microbial Composition

Ajay S. Gulati, G. Weinstock, N. Pace, 2012, PloS one.

Correction: Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

G. Weinstock, J. Parkinson, E. Sodergren, 2015, PloS one.

Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

John Parkinson, Ellen Li, Daniel N. Frank, 2015, PloS one.

Effect of Crohn’s Disease Risk Alleles on Enteric Microbiota Marker Paper

Wei Zhu, Ellen Li, Daniel N. Frank, 2010 .

Risk Factors for Surgical Recurrence after Ileocolic Resection of Crohn’s Disease

Yan Yan, Ellen Li, S. Hunt, 2008, Diseases of the colon and rectum.

NOD2 status and human ileal gene expression†‡

Ellen Li, Jianyun Lu, B. Dieckgraefe, 2010, Inflammatory bowel diseases.

Differential expression of miRNAs in colon cancer between African and Caucasian Americans: Implications for cancer racial health disparities

K. Shroyer, R. Bergamaschi, P. Ji, 2014, International journal of oncology.

ORIGINAL CONTRIBUTION Risk Factors for Surgical Recurrence after Ileocolic Resection of Crohn's Disease

Yan Yan, Ellen Li, S. Hunt, 2008 .

G. Weinstock, E. Sodergren, T. Dassopoulos, 2011 .

Crohn's disease is associated with restless legs syndrome

A. Walters, Ellen Li, L. Weinstock, 2010, Inflammatory bowel diseases.

Comparative analysis of microbiome measurement platforms using latent variable structural equation modeling

Ajay S. Gulati, D. Frank, Ellen Li, 2013, BMC Bioinformatics.

A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells

Sarah L. Brown, R. Xavier, J. Lennerz, 2008, Nature.

Tension at the Border: How Host Genetics and the Enteric Microbiota Conspire to Promote Crohn's Disease

D. Frank, Ellen Li, 2013 .

Metagenomic and bile acid metabolomic analysis of fecal microbiota transplantation for recurrent Clostridiodes difficile and/or inflammatory bowel diseases.

Jie Yang, E. Pamer, C. Robertson, 2022, Medical Research Archives.

Whole-genome sequencing of African Americans implicates differential genetic architecture in inflammatory bowel disease

Judy H. Cho, David T. Okou, Claire L. Simpson, 2021, American journal of human genetics.

Multi-omic analysis along the gut-brain axis points to a functional architecture of autism

Brittany D. Needham, R. Xavier, Mingbang Wang, 2022, bioRxiv.

Altered Interactions between the Gut Microbiome and Colonic Mucosa Precede Polyposis in APCMin/+ Mice

B. Rigas, D. Frank, C. Robertson, 2015, PloS one.

Aberrant DNA Methylation: Implications in Racial Health Disparity

P. Ji, Ellen Li, Joseph F LaComb, 2016, PloS one.

Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets

Xiao Xu, Wei Zhu, Song Wu, 2013, BMC Bioinformatics.

Genome-Wide Association Study Identifies African-Specific Susceptibility Loci in African Americans With Inflammatory Bowel Disease.

Judy H. Cho, David T. Okou, Claire L. Simpson, 2017, Gastroenterology.

A unique role for autophagy and Atg 16 L 1 in Paneth cells in murine and human intestine

Thaddeus, Elizabeth, Sarah L. Brown, 2009 .

Impaired granulocyte-macrophage colony-stimulating factor bioactivity accelerates surgical recurrence in ileal Crohn’s disease

B. Trapnell, Wei Zhu, Ellen Li, 2018, World journal of gastroenterology.

Insufficient evidence for association of NOD2/CARD15 or other inflammatory bowel disease-associated markers on GVHD incidence or other adverse outcomes in T-replete, unrelated donor transplantation.

N. Davidson, Stephanie J. Lee, Ellen Li, 2010, Blood.

Establishment of Highly Tumorigenic Human Colorectal Cancer Cell Line (CR4) with Properties of Putative Cancer Stem Cells

G. Botchkina, K. Shroyer, R. Bergamaschi, 2014, PloS one.

IDO1 and IDO2 Non-Synonymous Gene Variants: Correlation with Crohn's Disease Risk and Clinical Phenotype

Ellen Li, G. Sayuk, Alexander Lee, 2014, PloS one.

Longitudinal microbiome analysis of single donor fecal microbiota transplantation in patients with recurrent Clostridium difficile infection and/or ulcerative colitis

D. Frank, C. Robertson, Ellen Li, 2018, PloS one.

Autoinflammatory disease with focus on NOD2-associated disease in the era of genomic medicine

Ellen Li, B. Shen, Q. Yao, 2019, Autoimmunity.

The Effect of Race/Ethnicity on the Age of Colon Cancer Diagnosis.

K. Shroyer, R. Bergamaschi, Wei Zhu, 2013, Journal of health disparities research and practice.

P-069 YI Comparing Fecal Microbial Transplant Outcomes in Patients with Recurrent Clostridium Difficile or Ulcerative Colitis

Ellen Li, F. Monzur, A. Chawla, 2016 .

Multi-Class Classification Analysis Identifies an Ileal Gene Signature That Distinguishes Between Crohn's Disease, Ulcerative Colitis and Control Patients

T. Dassopoulos, Tianyi Zhang, Wei Zhu, 2011 .

Cluster analysis of genome-wide expression differences in disease-unaffected ileal mucosa in inflammatory bowel diseases

Xiangmin Jiao, Wei Zhu, Hongyan Chen, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Influence of Crohn's Disease Risk Alleles and Smoking on Disease Location

A. Bowcock, Hongyan Chen, Wei Zhu, 2011, Diseases of the colon and rectum.

A Microbial Association with Autism

Ellen Li, J. Benach, M. McGovern, 2012, mBio.

Multi-level analysis of the gut–brain axis shows autism spectrum disorder-associated molecular and microbial profiles

Brittany D. Needham, R. Xavier, Mingbang Wang, 2023, Nature Neuroscience.

Acid Metabolomic Analysis of

Jie Yang, E. Pamer, C. Robertson, 2022 .

A trimming-and-retrieving alignment scheme for reduced representation bisulfite sequencing

Xiaoqing Yu, Wei Zhu, Ellen Li, 2015, Bioinform..