A. Stojmirović

发表

Blood and Intestine eQTLs from an Anti-TNF-Resistant Crohn's Disease Cohort Inform IBD Genetic Association Loci

Judy H. Cho, K. Hao, A. Kasarskis, 2016, Clinical and Translational Gastroenterology.

Topology Proceedings

A. Stojmirović, 2008 .

Building a Hierarchical Organization of Protein Complexes Out of Protein Association Data

Yi-Kuo Yu, A. Stojmirović, 2014, PloS one.

PAI-1 augments mucosal damage in colitis

B. Muegge, D. Lawrence, P. Foster, 2019, Science Translational Medicine.

Information Flow in Interaction Networks II: Channels, Path Lengths, and Potentials

Yi-Kuo Yu, A. Stojmirović, 2009, J. Comput. Biol..

Quasi-metric spaces with measure

A. Stojmirović, 2003, math/0311070.

Biopsy and blood-based molecular biomarker of inflammation in IBD

A. Kasarskis, E. Schadt, M. Dubinsky, 2022, Gut.

Indexing Schemes for Similarity Search: an Illustrated Paradigm

Vladimir Pestov, Aleksandar Stojmirovic, V. Pestov, 2002, Fundam. Informaticae.

ppiTrim: constructing non-redundant and up-to-date interactomes

Aleksandar Stojmirovic, Yi-Kuo Yu, Yi-Kuo Yu, 2011, Database J. Biol. Databases Curation.

Robust and accurate data enrichment statistics via distribution function of sum of weights

Aleksandar Stojmirovic, Yi-Kuo Yu, Yi-Kuo Yu, 2010, Bioinform..

Information Flow in Interaction Networks

Aleksandar Stojmirovic, Yi-Kuo Yu, Yi-Kuo Yu, 2011, J. Comput. Biol..

A functional genomics predictive network model identifies regulators of inflammatory bowel disease

K. Hao, A. Kasarskis, Bin Zhang, 2017, Nature Genetics.

A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients

Radu Dobrin, E. Schadt, C. Argmann, 2023, Communications Biology.

Abnormal Small Intestinal Epithelial Microvilli in Patients With Crohn's Disease.

Patrick K. Kimes, B. Muegge, A. Stojmirović, 2018, Gastroenterology.

Molecular characterization of limited ulcerative colitis reveals novel biology and predictors of disease extension.

Judy H. Cho, K. Hao, A. Kasarskis, 2021, Gastroenterology.

Intestinal Inflammation Modulates the Expression of ACE2 and TMPRSS2 and Potentially Overlaps With the Pathogenesis of SARS-CoV-2–related Disease

Judy H. Cho, K. Hao, A. Kasarskis, 2020, Gastroenterology.

Intestinal Inflammation Modulates the Expression of ACE2 and TMPRSS2 and Potentially Overlaps With the Pathogenesis of SARS-CoV-2–related Disease

Judy H. Cho, K. Hao, A. Kasarskis, 2020, bioRxiv.

Integrative analysis of the Inflammatory Bowel Disease serum metabolome improves our understanding of genetic etiology and points to novel putative therapeutic targets.

Judy H. Cho, K. Hao, A. Kasarskis, 2021, Gastroenterology.

Ulcerative colitis is characterized by a plasmablast-skewed humoral response associated with disease activity

E. Kenigsberg, M. Dubinsky, M. Clatworthy, 2022, Nature Medicine.

Topology-function conservation in protein–protein interaction networks

Natasa Przulj, Aleksandar Stojmirovic, Noël Malod-Dognin, 2015, Bioinform..

Quasi-metrics, Similarities and Searches: aspects of geometry of protein datasets pdf

Aleksandar Stojmirovic, A. Stojmirović, 2008, ArXiv.

Deep Analysis of the Peripheral Immune System in IBD Reveals New Insight in Disease Subtyping and Response to Monotherapy or Combination Therapy

Judy H. Cho, E. Amir, A. Kasarskis, 2021, Cellular and molecular gastroenterology and hepatology.

Revealing the Hidden Language of Complex Networks

Zoran Levnajic, Nataša Pržulj, Aleksandar Stojmirovic, 2014, Scientific Reports.

NDEx, the Network Data Exchange.

Jing Chen, Trey Ideker, Aleksandar Stojmirovic, 2015, Cell systems.

Automatic estimation of ulcerative colitis severity from endoscopy videos using ordinal multi-instance learning pdf

Evan Schwab, Aleksandar Stojmirovic, Gabriela Oana Cula, 2021, Comput. methods Biomech. Biomed. Eng. Imaging Vis..

Polygenic Risk Score for Alcohol Drinking Behavior Improves Prediction of Inflammatory Bowel Disease Risk.

Judy H. Cho, K. Hao, A. Kasarskis, 2021, Human molecular genetics.

The effectiveness of position- and composition-specific gap costs for protein similarity searches

E. Michael Gertz, Aleksandar Stojmirovic, Stephen F. Altschul, 2008, ISMB.

P328 In silico evaluation and pre-clinical efficacy of anti-TNF and anti-IL-23 combination therapy in Inflammatory Bowel Disease

K. Ngo, A. Stojmirović, J. Perrigoue, 2022, Journal of Crohn's and Colitis.

Log-odds sequence logos

Aleksandar Stojmirovic, David Landsman, Stephen F. Altschul, 2015, Bioinform..

ITM Probe: analyzing information flow in protein networks

Aleksandar Stojmirovic, Yi-Kuo Yu, Yi-Kuo Yu, 2009, Bioinform..

CytoITMprobe: a network information flow plugin for Cytoscape

Aleksandar Stojmirovic, Yi-Kuo Yu, Alexander Bliskovsky, 2011, BMC Research Notes.

PFMFind: A System for Discovery of Peptide Homology and Function

Vladimir Pestov, Peter Andreae, Aleksandar Stojmirovic, 2006, SISAP.

Gene coexpression networks reveal a broad role for lncRNAs in inflammatory bowel disease

A. Stojmirović, J. Perrigoue, M. Suárez-Fariñas, 2024, JCI insight.