Mingfu Shao

发表

SQUID: transcriptomic structural variation detection from RNA-seq

Carl Kingsford, Mingfu Shao, Cong Ma, 2018, Genome Biology.

SQUID: Transcriptomic Structural Variation Detection from RNA-seq

Cong Ma, Mingfu Shao, Carl Kingsford, 2017, bioRxiv.

Models and Algorithms for Comparative Genomics

Mingfu Shao, 2015 .

Improving protein threading accuracy via combining local and global potential using TreeCRF model

Chao Wang, Dongbo Bu, Mingfu Shao, 2015 .

Context-aware seeds for read mapping

Hongyi Xin, Mingfu Shao, Carl Kingsford, 2020, Algorithms for Molecular Biology.

Context-aware seeds for read mapping

Hongyi Xin, Mingfu Shao, Carl Kingsford, 2019, bioRxiv.

A maximum-likelihood approach for building cell-type trees by lifting

Yu Lin, Bernard M. E. Moret, Mingfu Shao, 2016, BMC Genomics.

The Pennsylvania State University The Graduate School USING FEMALE ALIGNMENT FEATURES TO IDENTIFY READS FROM THE Y CHROMOSOME IN NANOPORE WHOLE GENOME SEQUENCING DATA

Mingfu Shao, Natasha Stopa, 2020 .

Locality-sensitive bucketing functions

Ke Chen, Mingfu Shao, 2022, ArXiv.

Quantifying the Benefit Offered by Transcript Assembly on Single-Molecule Long Reads

Laura H. Tung, Mingfu Shao, Carl Kingsford, 2019, bioRxiv.

Quantifying the benefit offered by transcript assembly with Scallop-LR on single-molecule long reads

Laura H. Tung, Mingfu Shao, Carl Kingsford, 2019, Genome Biology.

Locality-sensitive bucketing functions for the edit distance

Ke Chen, Mingfu Shao, 2022, Algorithms for Molecular Biology.

Scallop enables accurate assembly of transcripts through phasing-preserving graph decomposition

Mingfu Shao, Carl Kingsford, 2017, bioRxiv.

Differentiation of the Seven Major Lyssavirus Species by Oligonucleotide Microarray

Jiayu Wan, Mingfu Shao, N. Su, 2011, Journal of Clinical Microbiology.

An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes

Bernard M. E. Moret, Mingfu Shao, Yu Lin, 2015, J. Comput. Biol..

An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate Genes

Yu Lin, Bernard M. E. Moret, Mingfu Shao, 2014, RECOMB.

Sorting genomes with rearrangements and segmental duplications through trajectory graphs

Yu Lin, Bernard M. E. Moret, Mingfu Shao, 2013, BMC Bioinformatics.

SQUID: transcriptomic structural variation detection from RNA-seq

Cong Ma, Mingfu Shao, Carl Kingsford, 2017, bioRxiv.

Comparing genomes with rearrangements and segmental duplications

Bernard M. E. Moret, Mingfu Shao, Mingfu Shao, 2015, Bioinform..

Quantifying the benefit offered by transcript assembly with Scallop-LR on single-molecule long reads

Laura H. Tung, Mingfu Shao, Carl Kingsford, 2019, Genome Biology.

Temporal and spatial dynamics of rabies viruses in China and Southeast Asia.

Mingfu Shao, C. Tu, W. Gong, 2010, Virus research.

Scallop2 enables accurate assembly of multiple-end RNA-seq data

Mingfu Shao, Qimin Zhang, Qian Shi, 2021, bioRxiv.

Accurate assembly of transcripts through phase-preserving graph decomposition

Carl Kingsford, Mingfu Shao, Mingfu Shao, 2017, Nature Biotechnology.

DeepBound: accurate identification of transcript boundaries via deep convolutional neural fields

Sheng Wang, Jianzhu Ma, Mingfu Shao, 2017, bioRxiv.

On de novo Bridging Paired-end RNA-seq Data

Xiang Li, Mingfu Shao, Xiang Li, 2023, ArXiv.

On bridging paired-end RNA-seq data

Mingfu Shao, Xiang Li, Qian Shi, 2021, bioRxiv.

Coral accurately bridges paired-end RNA-seq reads alignment

Mingfu Shao, Qian Shi, Mingfu Shao, 2020, bioRxiv.

Theory and A Heuristic for the Minimum Path Flow Decomposition Problem

Carl Kingsford, Mingfu Shao, Mingfu Shao, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Efficient Heuristic for Decomposing a Flow with Minimum Number of Paths

Carl Kingsford, Mingfu Shao, Mingfu Shao, 2016, bioRxiv.

A maximum-likelihood approach for building cell-type trees by lifting

Bernard M. E. Moret, P. Bucher, Mingfu Shao, 2016, BMC Genomics.

Accurate assembly of multi-end RNA-seq data with Scallop2

Mingfu Shao, Qimin Zhang, Qian Shi, 2022, Nature Computational Science.

Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion

Yu Lin, Mingfu Shao, Mingfu Shao, 2012, BMC Bioinformatics.

A Fast and Exact Algorithm for the Exemplar Breakpoint Distance

Bernard M. E. Moret, Mingfu Shao, Mingfu Shao, 2015, RECOMB.

On the DCJ Median Problem

Bernard M. E. Moret, Mingfu Shao, Mingfu Shao, 2014, CPM.

Transcript Assembly and Annotations: Bias and Adjustment

Mingfu Shao, Qimin Zhang, 2023, bioRxiv.