A. R. Banday

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Edinburgh Research Explorer Association of germline variants in the APOBEC3 region with cancer risk and enrichment with APOBEC-signature mutations in tumors

Bin Zhu, Jonine D Figueroa, Nathaniel Rothman, 2022 .

Association of donor IFNL4 genotype and non-relapse mortality after unrelated donor myeloablative haematopoietic stem-cell transplantation for acute leukaemia: a retrospective cohort study.

Lara E Sucheston-Campbell, Lara E. Sucheston-Campbell, L. Prokunina-Olsson, 2020, The Lancet. Haematology.

Interferons and viruses induce a novel primate-specific isoform dACE2 and not the SARS-CoV-2 receptor ACE2

L. Prokunina-Olsson, D. Tyrrell, S. Boulant, 2020, bioRxiv.

Genetic regulation of OAS1 nonsense-mediated decay underlies association with risk of severe COVID-19

G. Barsh, M. Peluso, D. Rader, 2021, medRxiv.

Expression Analysis of an Evolutionarily Conserved Alternative Splicing Factor, Sfrs10, in Age-Related Macular Degeneration

A. R. Banday, Devi Krishna Priya Karunakaran, Qian Wu, 2013, PloS one.

Genetic regulation of OAS1 nonsense-mediated decay underlies association with COVID-19 hospitalization in patients of European and African ancestries

Iman A. Mohammed, M. Peluso, S. Chanock, 2022, Nature Genetics.

Interferons and viruses induce a novel truncated ACE2 isoform and not the full-length SARS-CoV-2 receptor

L. Prokunina-Olsson, D. Tyrrell, S. Boulant, 2020, Nature Genetics.

Two novel N-terminal coding exons of Prkar1b gene of mouse: identified using a novel approach of in silico and molecular biology techniques.

A. R. Banday, S. Rehman, M. Tabish, 2012, Gene.

Differentially expressed three non-coding alternate exons at 5′ UTR of regulatory type I beta subunit gene of mouse

A. R. Banday, M. Tabish, Shafquat Azim, 2012, Molecular Biology Reports.

Alternatively Spliced Variants of Gamma-Subunit of Muscle-Type Acetylcholine Receptor in Fetal and Adult Skeletal Muscle of Mouse

A. R. Banday, M. Tabish, Tarique Sarwar, 2012, Cellular and Molecular Neurobiology.

Determination of the cationic amphiphilic drug-DNA binding mode and DNA-assisted fluorescence resonance energy transfer amplification.

A. R. Banday, Kabir-ud-din, M. Tabish, 2014, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development

I. Măndoiu, A. R. Banday, Devi Krishna Priya Karunakaran, 2016, BMC Genomics.

Identification of a novel susceptibility locus at 13q34 and refinement of the 20p12.2 region as a multi-signal locus associated with bladder cancer risk in individuals of European ancestry.

Zhaoming, Jack A. Taylor, L. Kiemeney, 2016, Human molecular genetics.

When the Smoke Clears m6A from a Y Chromosome–Linked lncRNA, Men Get an Increased Risk of Cancer

L. Prokunina-Olsson, A. R. Banday, B. Papenberg, 2020, Cancer Research.

Isoform-specific characterization implicates alternative splicing in APOBEC3B as a mechanism restricting APOBEC-mediated mutagenesis

L. Prokunina-Olsson, V. Pathak, L. Dyrskjøt, 2020, bioRxiv.

APOBEC Mutagenesis and Copy-Number Alterations Are Drivers of Proteogenomic Tumor Evolution and Heterogeneity in Metastatic Thoracic Tumors

Anna L. Brown, A. Panchenko, L. Prokunina-Olsson, 2019, Cell reports.

Integrated proteogenomic analysis of metastatic thoracic tumors identifies APOBEC mutagenesis and copy number alterations as drivers of proteogenomic tumor evolution and heterogeneity

A. Panchenko, L. Prokunina-Olsson, S. Sindiri, 2018, bioRxiv.

Alternative promoter usage and differential expression of multiple transcripts of mouse Prkar1a gene

A. R. Banday, M. Tabish, Shafquat Azim, 2011, Molecular and Cellular Biochemistry.

Replication-dependent histone genes are actively transcribed in differentiating and aging retinal neurons

I. Măndoiu, C. Punzo, A. R. Banday, 2014, Cell cycle.

Modification of Occupational Exposures on Bladder Cancer Risk by Common Genetic Polymorphisms.

N. Malats, M. Kogevinas, A. Carrato, 2015, Journal of the National Cancer Institute.

Intracellular Accumulation of IFN-λ4 Induces ER Stress and Results in Anti-Cirrhotic but Pro-HCV Effects

C. Tanikawa, K. Matsuda, L. Prokunina-Olsson, 2021, Frontiers in Immunology.

Abstracts in international conferences

A. R. Banday, M. Tabish, Shafquat Azim, 2013 .

Minor splicing snRNAs are enriched in the developing mouse CNS and are crucial for survival of differentiating retinal neurons

I. Măndoiu, A. R. Banday, Devi Krishna Priya Karunakaran, 2015, Developmental neurobiology.

IFN-λ4 may contribute to HCV persistence by increasing ER stress and enhancing IRF1 signaling

Mauro A. A. Castro, C. Tanikawa, K. Matsuda, 2020, bioRxiv.

Identification and expression analysis of three novel splice variants of protein kinase A catalytic β subunit gene in the mouse using combinatorial in silico and molecular biology approaches

A. R. Banday, M. Tabish, Shafquat Azim, 2012, The FEBS journal.

Identification of alternatively spliced multiple transcripts of 5-hydroxytryptamine receptor in mouse

A. R. Banday, M. Tabish, Shafquat Azim, 2012, Brain Research Bulletin.

APOBEC3-mediated mutagenesis in cancer: causes, clinical significance and therapeutic potential

A. R. Banday, Kelly Butler, Kelly E Butler, 2023, Journal of Hematology & Oncology.

APOBEC-mediated Mutagenesis as a Likely Cause of FGFR3 S249C Mutation Over-representation in Bladder Cancer.

L. Prokunina-Olsson, F. Radvanyi, I. Bernard-Pierrot, 2019, European urology.

Computational prediction and characterisation of ubiquitously expressed new splice variant of Prkaca gene in mouse

A. R. Banday, M. Tabish, S. Nehar, 2013, Cell biology international.

Alternatively Spliced Variants of Gamma-Subunit of Muscle-Type Acetylcholine Receptor in Fetal and Adult Skeletal Muscle of Mouse

A. R. Banday, M. Tabish, Tarique Sarwar, 2012, Cellular and Molecular Neurobiology.

Strenuous occupational physical activity - potential association with esophageal squamous cell carcinoma risk

P. Boffetta, A. R. Banday, I. Shah, 2018, bioRxiv.

APOBEC3B expression in breast cancer cell lines and tumors depends on the estrogen receptor status.

L. Prokunina-Olsson, A. R. Banday, Krizia-Ivana Udquim, 2020, Carcinogenesis.

Alternatively Spliced Three Novel Transcripts of gria1 in the Cerebellum and Cortex of Mouse Brain

A. R. Banday, M. Tabish, Shafquat Azim, 2011, Neurochemical Research.

Association of germline variants in the APOBEC3 region with cancer risk and enrichment with APOBEC-signature mutations in tumors

N. Malats, M. Kogevinas, D. Silverman, 2016, Nature Genetics.

Flexible approach for novel transcript reconstruction from RNA-seq data using maximum likelihood integer programming

Alexander Zelikovsky, Ion I. Mandoiu, Dumitru Brinza, 2013, BICoB 2013.

An integer programming approach to novel transcript reconstruction from paired-end RNA-Seq reads

Dumitru Brinza, Serghei Mangul, Adrian Caciula, 2012, BCB.

Minor splicing snRNAs are enriched in the developing mouse CNS and are crucial for survival of differentiating retinal neurons

I. Măndoiu, A. R. Banday, Devi Krishna Priya Karunakaran, 2015, Developmental neurobiology.

Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development

Ion I. Măndoiu, Abdul Rouf Banday, Christopher Lemoine, 2016, BMC Genomics.