Svenja Simon

发表

Mining Rare Associations between Biological Ontologies

Elena P. Sapozhnikova, F. Benites, Svenja Simon, 2014, PloS one.

Comparison of strand-specific transcriptomes of enterohemorrhagic Escherichia coli O157:H7 EDL933 (EHEC) under eleven different environmental conditions including radish sprouts and cattle feces

D. Keim, Svenja Simon, Steffen Schober, 2014, BMC Genomics.

Differentiation of ncRNAs from small mRNAs in Escherichia coli O157:H7 EDL933 (EHEC) by combined RNAseq and RIBOseq – ryhB encodes the regulatory RNA RyhB and a peptide, RyhP

Patrick R. Wright, D. Keim, R. Backofen, 2017, BMC Genomics.

Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)

B. Rost, B. Kuster, D. Keim, 2016, BMC Genomics.

Evidence for the recent origin of a bacterial protein-coding, overlapping orphan gene by evolutionary overprinting

D. Keim, M. Witting, P. Schmitt‐Kopplin, 2015, BMC Evolutionary Biology.

A novel short L-arginine responsive protein-coding gene (laoB) antiparallel overlapping to a CadC-like transcriptional regulator in Escherichia coli O157:H7 Sakai originated by overprinting

Svenja Simon, K. Neuhaus, S. Scherer, 2018, BMC Evolutionary Biology.

Comparison of strand-specific transcriptomes of enterohemorrhagic Escherichia coli O157:H7 EDL933 (EHEC) under eleven different environmental conditions including radish sprouts and cattle feces

D. Keim, Svenja Simon, Steffen Schober, 2014, BMC Genomics.

A novel short L-arginine responsive protein-coding gene (laoB) antiparallel overlapping to a CadC-like transcriptional regulator in Escherichia coli O157:H7 Sakai originated by overprinting

Svenja Simon, K. Neuhaus, S. Scherer, 2018, BMC evolutionary biology.

Evidence for the recent origin of a bacterial protein-coding, overlapping orphan gene by evolutionary overprinting

D. Keim, M. Witting, P. Schmitt‐Kopplin, 2015, BMC Evolutionary Biology.

Visual analysis of next-generation sequencing data to detect overlapping genes in bacterial genomes

Daniel A. Keim, Daniela Oelke, Svenja Simon, 2011, 2011 IEEE Symposium on Biological Data Visualization (BioVis)..

Multivariate Analysis of Flow Cytometric Data Using Decision Trees

Reinhard Guthke, Oliver Frey, Svenja Simon, 2012, Front. Microbio..

Proteomic Profiling of Serological Responses to Aspergillus fumigatus Antigens in Patients with Invasive Aspergillosis.

H. Einsele, R. Guthke, O. Kniemeyer, 2016, Journal of proteome research.

Transcriptional and translational regulation by RNA thermometers, riboswitches and the sRNA DsrA in Escherichia coli O157: H7 Sakai under combined cold and osmotic stress adaptation

Svenja Simon, K. Neuhaus, S. Scherer, 2017, FEMS microbiology letters.

Probiotic Enterococcus faecalis Symbioflor® down regulates virulence genes of EHEC in vitro and decrease pathogenicity in a Caenorhabditis elegans model

R. Vogel, M. Ehrmann, Svenja Simon, 2016, Archives of Microbiology.

Draft Genome Sequences of Three European Laboratory Derivatives from Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933, Including Two Plasmids

Svenja Simon, K. Neuhaus, S. Scherer, 2016, Genome Announcements.

Bridging the Gap of Domain and Visualization Experts with a Liaison

Daniel A. Keim, Michael Sedlmair, Sebastian Mittelstädt, 2015, EuroVis.

Phenotype of htgA (mbiA), a recently evolved orphan gene of Escherichia coli and Shigella, completely overlapping in antisense to yaaW.

D. Keim, M. Witting, P. Schmitt‐Kopplin, 2014, FEMS microbiology letters.

VisExpress: Visual exploration of differential gene expression data

Daniel A. Keim, Bum Chul Kwon, Andreas Stoffel, 2017, Inf. Vis..

Multivariate Analysis of Flow Cytometric Data Using Decision Trees

R. Guthke, O. Frey, Svenja Simon, 2012, Front. Microbio..

Visual Comparison of Orderings and Rankings

Daniel A. Keim, James Davey, Tobias Schreck, 2013, EuroVA@EuroVis.