T. Ryu

发表

Computational identification of significantly regulated metabolic reactions by integration of data on enzyme activity and gene expression.

Doheon Lee, Hojung Nam, K. Lee, 2008, BMB reports.

Dynamic Epigenetic Control of Highly Conserved Noncoding Elements

Loqmane Seridi, Taewoo Ryu, Timothy Ravasi, 2014, PloS one.

The evolution of ultraconserved elements with different phylogenetic origins

Loqmane Seridi, Taewoo Ryu, Timothy Ravasi, 2012, BMC Evolutionary Biology.

Hologenome analysis of two marine sponges with different microbiomes

Matt E. Oates, J. Gough, R. Sougrat, 2016, BMC Genomics.

The co‐transcriptome of uropathogenic E scherichia coli‐infected mouse macrophages reveals new insights into host–pathogen interactions

M. Sweet, T. Ravasi, S. Beatson, 2015, Cellular microbiology.

Sex Change in Clownfish: Molecular Insights from Transcriptome Analysis

T. Ravasi, X. Irigoien, T. Ryu, 2016, Scientific Reports.

The chromosome-scale genome assembly of the yellowtail clownfish Amphiprion clarkii provides insights into the melanic pigmentation of anemonefish

T. Ravasi, V. Laudet, B. Moore, 2022, bioRxiv.

CONVIRT: a web-based tool for transcriptional regulatory site identification using a conserved virtual chromosome.

Doheon Lee, T. Ryu, Cheol-Goo Hur, 2009, BMB reports.

The Draft Genome of an Octocoral, Dendronephthya gigantea

Yun Sung Cho, Jessica A. Weber, J. Bhak, 2018, bioRxiv.

Transcriptome assemblies of two deep-sea octocorals Calyptrophora lyra and Chrysogorgia stellata from West Pacific seamount, Godin Guyot.

Sung‐Jin Hwang, T. Ryu, S. Woo, 2023, Marine genomics.

Specificity and transcriptional activity of microbiota associated with low and high microbial abundance sponges from the Red Sea

T. Ravasi, C. Cannistraci, L. Moitinho-Silva, 2014, Molecular ecology.

Characterization of piRNAs across postnatal development in mouse brain

Piero Carninci, T. Ravasi, Hazuki Takahashi, 2016, Scientific Reports.

Computational identification of combinatorial regulation and transcription factor binding sites

Doheon Lee, Taewoo Ryu, Doheon Lee, 2007, Biotechnology and bioengineering.

Prediction of Extracellular Matrix Proteins Based on Distinctive Sequence and Domain Characteristics

Doheon Lee, Yongdeuk Hwang, Eunjung Lee, 2010, J. Comput. Biol..

Transcriptome analysis elucidates key developmental components of bryozoan lophophore development

S. Bougouffa, T. Ravasi, P. Qian, 2014, Scientific Reports.

Correction: miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria

T. Ravasi, M. Aranda, T. Ryu, 2016, PloS one.

miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria

Taewoo Ryu, Timothy Ravasi, Manuel Aranda, 2016, PloS one.

Molecular processes of transgenerational acclimation to a warming ocean

T. Ravasi, P. Munday, T. Ryu, 2015 .

Molecular signatures of transgenerational response to ocean acidification in a species of reef fish

T. Ravasi, P. Munday, T. Ryu, 2016 .

Transcriptome and Proteome Studies Reveal Candidate Attachment Genes during the Development of the Barnacle Amphibalanus Amphitrite

T. Ravasi, Sarah Al-Aqeel, T. Ryu, 2016, Front. Mar. Sci..

Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

T. Ravasi, P. Qian, Sarah Al-Aqeel, 2015, BMC Genomics.

The first reference transcriptome assembly of the stalked barnacle, Neolepas marisindica, from the Onnuri Vent Field on the Central Indian Ridge

T. Ryu, S. Woo, N. Lee, 2019 .

Predicting tissue-specific expressions based on sequence characteristics.

Doheon Lee, H. Paik, T. Ryu, 2011, BMB reports.

SECOM: A Novel Hash Seed and Community Detection Based-Approach for Genome-Scale Protein Domain Identification

Ka-Chun Wong, Xin Gao, Taewoo Ryu, 2012, PloS one.

Revealing microbial functional activities in the Red Sea sponge Stylissa carteri by metatranscriptomics.

T. Ravasi, L. Moitinho-Silva, U. Hentschel, 2014, Environmental microbiology.

The Draft Genome of an Octocoral, Dendronephthya gigantea

Yun Sung Cho, Jessica A. Weber, J. Bhak, 2018, bioRxiv.

Phenotypic and molecular consequences of stepwise temperature increase across generations in a coral reef fish

T. Ravasi, P. Munday, T. Ryu, 2018, Molecular ecology.

Shedding light on cell compartmentation in the candidate phylum Poribacteria by high resolution visualisation and transcriptional profiling

T. Ravasi, L. Moitinho-Silva, U. Hentschel, 2016, Scientific Reports.

A genetic screen for modifiers of Drosophila caspase Dcp-1 reveals caspase involvement in autophagy and novel caspase-related genes

Seung-Jae V. Lee, T. Ryu, J. Ahnn, 2010, BMC Cell Biology.

Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle

S. Baumgarten, Micheal C. Wilson, S. Bougouffa, 2016, Scientific Reports.

First transcriptome assembly of the temperate azooxanthellate octocoral Eleutherobia rubra

Sung‐Jin Hwang, S. Yum, T. Ryu, 2019 .

First transcriptome assembly of a newly discovered vent mussel, Gigantidas vrijenhoeki, at Onnuri Vent Field on the northern Central Indian Ridge.

S. Yum, T. Ryu, S. Woo, 2020, Marine genomics.

Unexpected complexity of the Reef-Building Coral Acropora millepora transcription factor network

Taewoo Ryu, Charalampos Mavromatis, Till Bayer, 2011, BMC Systems Biology.

An Epigenetic Signature for Within-Generational Plasticity of a Reef Fish to Ocean Warming

T. Ravasi, P. Munday, T. Ryu, 2020, Frontiers in Marine Science.

The epigenetic landscape of transgenerational acclimation to ocean warming

T. Ravasi, P. Munday, T. Ryu, 2018, Nature Climate Change.

Molecular Response to Extreme Summer Temperatures Differs Between Two Genetically Differentiated Populations of a Coral Reef Fish

T. Ravasi, P. Munday, T. Ryu, 2018, Frontiers in Marine Science.

Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea

T. Ravasi, P. Qian, Sarah Al-Aqeel, 2015, BMC Genomics.