Semen A. Leyn

发表

Effects of microbiota-directed foods in gnotobiotic animals and undernourished children

Richard J. Giannone, Michael J. Barratt, C. Sawyer, 2019, Science.

Combined Prebiotic and Microbial Intervention Improves Oral Cholera Vaccination Responses in a Mouse Model of Childhood Undernutrition.

Michael J. Barratt, A. Osterman, J. Gordon, 2020, Cell host & microbe.

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

William J. Riehl, A. Arkin, I. Dubchak, 2013, BMC Genomics.

Complete and Draft Genome Sequences of 12 Plant-Associated Rathayibacter Strains of Known and Putative New Species

A. Osterman, S. Nadler, S. Subbotin, 2020, Microbiology Resource Announcements.

Draft Genome Sequences of 13 Plant-Associated Actinobacteria of the Family Microbacteriaceae

S. Nadler, S. Subbotin, Semen A. Leyn, 2020, Microbiology Resource Announcements.

Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria

M. Saier, M. Kazanov, D. Rodionov, 2013, BMC Genomics.

Genomic Reconstruction of the Transcriptional Regulatory Network in Bacillus subtilis

E. O. Ermakova, M. Kazanov, D. Rodionov, 2013, Journal of bacteriology.

Control of Proteobacterial Central Carbon Metabolism by the HexR Transcriptional Regulator

Andrei L Osterman, Dmitry A Rodionov, James K Fredrickson, 2011, The Journal of Biological Chemistry.

Transcriptional Regulation of Central Carbon and Energy Metabolism in Bacteria by Redox-Responsive Repressor Rex

Karsten Zengler, Pavel S. Novichkov, Dmitry A. Rodionov, 2011, Journal of bacteriology.

Title Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria Permalink

M. Saier, M. Kazanov, D. Rodionov, 2013 .

Comparative Genomics of DtxR Family Regulons for Metal Homeostasis in Archaea

D. Rodionov, Semen A. Leyn, 2014, Journal of bacteriology.

B-Vitamin Sharing Promotes Stability of Gut Microbial Communities

S. Peterson, A. Osterman, D. Peterson, 2019, Front. Microbiol..

A Novel Transcriptional Regulator Related to Thiamine Phosphate Synthase Controls Thiamine Metabolism Genes in Archaea

D. Rodionov, Semen A. Leyn, I. Rodionova, 2016, Journal of bacteriology.

Comparative Genomics of Transcriptional Regulation of Methionine Metabolism in Proteobacteria

M. Gelfand, D. Rodionov, I. Suvorova, 2014, PloS one.

Linking the duodenal microbiota to stunting in a cohort of undernourished Bangladeshi children with enteropathy

Michael J. Barratt, R. Haque, A. Osterman, 2020, The New England journal of medicine.

Genetic Divergence of Vibrio vulnificus Clinical Isolates with Mild to Severe Outcomes

A. Godzik, D. Rodionov, Semen A. Leyn, 2022, mBio.

Ribulokinase and Transcriptional Regulation of Arabinose Metabolism in Clostridium acetobutylicum

D. Rodionov, Yang Gu, Weihong Jiang, 2011, Journal of bacteriology.

Genetic Divergence of Vibrio vulnificus Clinical Isolates with Mild to Severe Outcomes

A. Godzik, D. Rodionov, Semen A. Leyn, 2022, mBio.

Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans

Michael J. Barratt, A. Osterman, A. Raman, 2021, Nature.

Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children

Michael J. Barratt, A. Osterman, B. Henrissat, 2016, Science.

Bioremediation of a Common Product of Food Processing by a Human Gut Bacterium.

Andrei L Osterman, Richard J. Giannone, Dmitry A Rodionov, 2019, Cell host & microbe.

A sparse covarying unit that describes healthy and impaired human gut microbiota development

Michael J. Barratt, G. Kang, R. Haque, 2019, Science.

Micronutrient Requirements and Sharing Capabilities of the Human Gut Microbiome

S. Peterson, A. Osterman, D. Rodionov, 2019, Front. Microbiol..

Global Expansion of Linezolid-Resistant Coagulase-Negative Staphylococci

Semen A. Leyn, S. Sidorenko, V. Gostev, 2021, Frontiers in Microbiology.

Novel inositol catabolic pathway in Thermotoga maritima.

A. Osterman, D. Rodionov, K. Noll, 2013, Environmental microbiology.

Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel

Daniel N. Wilson, A. Osterman, P. Sergiev, 2020, Nature Chemical Biology.

Novel Transcriptional Regulons for Autotrophic Cycle Genes in Crenarchaeota

D. Rodionov, Semen A. Leyn, I. Rodionova, 2015, Journal of bacteriology.

Experimental evolution in morbidostat reveals converging genomic trajectories on the path to triclosan resistance

A. Osterman, F. García-Alcalde, O. Kurnasov, 2021, Microbial genomics.

Genomic Reconstruction of Carbohydrate Utilization Capacities in Microbial-Mat Derived Consortia

D. Rodionov, Semen A. Leyn, M. Romine, 2017, Front. Microbiol..

N-Acetylgalactosamine Utilization Pathway and Regulon in Proteobacteria

D. Rodionov, Semen A. Leyn, Chen Yang, 2012, The Journal of Biological Chemistry.

Identifying determinants of bacterial fitness in a model of human gut microbial succession

Yangqing Peng, A. Osterman, A. Raman, 2020, Proceedings of the National Academy of Sciences.

Linking the duodenal microbiota to stunting in a cohort of undernourished Bangladeshi children with enteropathy.

Michael J. Barratt, A. Osterman, J. Gordon, 2020, The New England journal of medicine.

A broad-spectrum synthetic antibiotic that does not evoke bacterial resistance

A. Osterman, G. Bazan, D. Low, 2023, EBioMedicine.

Shared and Unique Evolutionary Trajectories to Ciprofloxacin Resistance in Gram-Negative Bacterial Pathogens

A. Osterman, F. García-Alcalde, Semen A. Leyn, 2021, bioRxiv.

Transcriptional Regulation of Carbohydrate Utilization Pathways in the Bifidobacterium Genus

D. Rodionov, D. van Sinderen, Semen A. Leyn, 2016, Front. Microbiol..

Comparative genomics and evolution of transcriptional regulons in Proteobacteria

D. Rodionov, I. Suvorova, D. Ravcheev, 2016, Microbial genomics.

Evolution of resistance to a tricyclic pyrimidoindole DNA gyrase/topoisomerase inhibitor in Escherichia coli and Acinetobacter baumannii is driven by upregulation of efflux machinery

A. Osterman, Semen A. Leyn, J. E. Kent, 2023, bioRxiv.

Bioactive glycans in a microbiome-directed food for malnourished children

Ye, Michael J. Barratt, A. Osterman, 2023, medRxiv.

Comparative genomics and evolution of transcriptional regulons in Proteobacteria

D. Rodionov, I. Suvorova, D. Ravcheev, 2016, Microbial genomics.

Novel Transcriptional Regulons for Autotrophic Cycle Genes in Crenarchaeota

D. Rodionov, Semen A. Leyn, I. Rodionova, 2015, Journal of bacteriology.

Ribulokinase and Transcriptional Regulation of Arabinose Metabolism in Clostridium acetobutylicum

D. Rodionov, Yang Gu, Weihong Jiang, 2011, Journal of bacteriology.

A novel antibiotic class targeting the lipopolysaccharide transporter

A. Osterman, F. García-Alcalde, A. Haldimann, 2024, Nature.

Bioactive glycans in a microbiome-directed food for children with malnutrition

A. Osterman, M. Kazanov, C. Lebrilla, 2023, Nature.

Control of Proteobacterial Central Carbon Metabolism by the HexR Transcriptional Regulator

Samantha B. Reed, A. Osterman, D. Rodionov, 2011, The Journal of Biological Chemistry.