J. Gracy

发表

Knottin cyclization: impact on structure and dynamics

L. Chiche, H. Kolmar, A. Heitz, 2008, BMC Structural Biology.

Structure Analysis Uncovers a Highly Diverse but Structurally Conserved Effector Family in Phytopathogenic Fungi

Thomas Kroj, Elisabeth Fournier, T. Kroj, 2015, PLoS pathogens.

Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its sequence–structure–function analysis

G. Labesse, J. Pons, M. Gautier, 2019, PeerJ.

Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its sequence–structure–function analysis

G. Labesse, J. Pons, M. Gautier, 2019, PeerJ.

Structure and folding of disulfide‐rich miniproteins: Insights from molecular dynamics simulations and MM‐PBSA free energy calculations

D. Craik, L. Chiche, A. Heitz, 2008, Proteins.

A Mycobacterium tuberculosis effector targets mitochondrion, controls energy metabolism and limits cytochrome c exit

P. Barthe, J. Gracy, G. Mukamolova, 2021, bioRxiv.

KNOTTIN: the database of inhibitor cystine knot scaffold after 10 years, toward a systematic structure modeling

Jean-Christophe Gelly, Jérôme Gracy, Laurent Chiche, 2017, Nucleic Acids Res..

Automated protein sequence database classification. I. Integration of compositional similarity search, local similarity search, and multiple sequence alignment

Jérôme Gracy, P. Argos, P. Argos, 1998, Bioinform..

Automated protein sequence database classification. II. Delineation Of domain boundaries from sequence similarities

Jérôme Gracy, P. Argos, P. Argos, 1998, Bioinform..

EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments

Jean-Christophe Gelly, Jérôme Gracy, Laurent Chiche, 2005, BMC Bioinformatics.

The KNOTTIN website and database: a new information system dedicated to the knottin scaffold

Jean-Christophe Gelly, Jérôme Gracy, Dung Le-Nguyen, 2004, Nucleic Acids Res..

Programmable receptors enable bacterial biosensors to detect pathological biomarkers in clinical samples

Peter L. Voyvodic, G. Cambray, J. Bonnet, 2021, Nature communications.

A synthetic receptor platform enables rapid and portable monitoring of liver dysfunction via engineered bacteria

Peter L. Voyvodic, G. Cambray, J. Bonnet, 2021, bioRxiv.

A new family of structurally conserved fungal effectors displays epistatic interactions with plant resistance proteins

H. van Tilbeurgh, J. Gracy, T. Rouxel, 2020, bioRxiv.

Recognition of a pathogen avirulence (AVR) effector protein by a cognate plant resistance

J. Gracy, T. Rouxel, M. Balesdent, 2020 .

DOMO: a new database of aligned protein domains.

P Argos, J Gracy, P. Argos, 1998, Trends in biochemical sciences.

Direct Selection of EGF Mutants Displayed on Filamentous Phage Using Cells Overexpressing EGF Receptor

L. Chiche, J. Gracy, M. Weill, 1999, Biological chemistry.

Recognition of the Magnaporthe oryzae Effector AVR-Pia by the Decoy Domain of the Rice NLR Immune Receptor RGA5[OPEN]

T. Kroj, A. Padilla, J. Gracy, 2017, Plant Cell.

Adaptive evolution in virulence effectors of the rice blast fungus Pyricularia oryzae

T. Kroj, A. Padilla, I. Meusnier, 2023, bioRxiv.

Squash inhibitors: from structural motifs to macrocyclic knottins.

Jean-Christophe Gelly, Jérôme Gracy, Annie Heitz, 2004, Current protein & peptide science.

KNOTTIN: the knottin or inhibitor cystine knot scaffold in 2007

Jean-Christophe Gelly, Jérôme Gracy, Dung Le-Nguyen, 2007, Nucleic Acids Res..

A Mycobacterium tuberculosis Effector Targets Mitochondrion, Controls Energy Metabolism, and Limits Cytochrome c Exit

P. Barthe, J. Gracy, O. Neyrolles, 2021, bioRxiv.

PAT: a protein analysis toolkit for integrated biocomputing on the web

Jérôme Gracy, Laurent Chiche, L. Chiche, 2005, Nucleic Acids Res..

Improved alignment of weakly homologous protein sequences using structural information.

J Gracy, J Sallantin, J. Sallantin, 1993, Protein engineering.

Structure and modeling of knottins, a promising molecular scaffold for drug discovery.

Jérôme Gracy, Laurent Chiche, L. Chiche, 2011, Current pharmaceutical design.

Optimizing structural modeling for a specific protein scaffold: knottins or inhibitor cystine knots

Jérôme Gracy, Laurent Chiche, L. Chiche, 2010, BMC Bioinformatics.

Adaptive evolution in virulence effectors of the rice blast fungus Pyricularia oryzae

T. Kroj, A. Padilla, I. Meusnier, 2023, bioRxiv.

The structural landscape and diversity of Pyricularia oryzae MAX effectors revisited.

T. Kroj, C. Roumestand, P. Gladieux, 2024, PLoS pathogens.