J. Ahmad

发表

Identification of putative vaccine candidates against Helicobacter pylori exploiting exoproteome and secretome: a reverse vaccinology based approach.

Amjad Ali, Rehan Zafar Paracha, Ayesha Obaid, 2015, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Formal Modeling of mTOR Associated Biological Regulatory Network Reveals Novel Therapeutic Strategy for the Treatment of Cancer

R. Z. Paracha, Amjad Ali, J. Ahmad, 2017, Front. Physiol..

Qualitative modelling and analysis of gene regulatory networks: application to the adaptation of Escherichia coli bacterium to carbon availability

Jérémie Bourdon, J. Ahmad, D. Eveillard, 2009 .

Formal modeling and analysis of ER-α associated Biological Regulatory Network in breast cancer

Samar H. K. Tareen, J. Ahmad, Zurah Bibi, 2016, PeerJ.

Formal Modeling and Analysis of the MAL-Associated Biological Regulatory Network: Insight into Cerebral Malaria

U. Niazi, J. Bibby, J. Ahmad, 2012, PloS one.

Identification of Circulating Biomarker Candidates for Hepatocellular Carcinoma (HCC): An Integrated Prioritization Approach

Ayesha Obaid, Amjad Ali, A. Naz, 2015, PloS one.

Modeling and analysis of innate immune responses induced by the host cells against hepatitis C virus infection.

J. Baumbach, R. Z. Paracha, Ayesha Obaid, 2015, Integrative biology : quantitative biosciences from nano to macro.

Identification of self-regulatory network motifs in reverse engineering gene regulatory networks using microarray gene expression data.

J. Ahmad, Sharifullah Khan, M. Khalid, 2019, IET systems biology.

Petri Net and Probabilistic Model Checking Based Approach for the Modelling, Simulation and Verification of Internet Worm Propagation

J. Ahmad, Misbah Razzaq, Jamil Ahmad, 2015, PloS one.

Deciphering the expression dynamics of ANGPTL8 associated regulatory network in insulin resistance using formal modelling approaches

Amjad Ali, J. Ahmad, Amnah Siddiqa, 2020, IET systems biology.

Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

Amjad Ali, Rehan Zafar Paracha, Ayesha Obaid, 2016, BMC Genomics.

Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis

Samar H. K. Tareen, C. Evelo, M. Kutmon, 2018, Front. Physiol..

Visualizing the regulatory role of Angiopoietin-like protein 8 (ANGPTL8) in glucose and lipid metabolic pathways.

Amjad Ali, Amnah Siddiqa, Elisa Cirillo, 2017, Genomics.

Petri Net modelling approach for analysing the behaviour of Wnt/[inline-formula removed]-catenin and Wnt/Ca2+ signalling pathways in arrhythmogenic right ventricular cardiomyopathy.

F. Jalil, J. Ahmad, Nazia Azim, 2020, IET systems biology.

Model of the adaptive immune response system against HCV infection reveals potential immunomodulatory agents for combination therapy

Ayesha Obaid, Amjad Ali, A. Naz, 2018, Scientific Reports.

MicroRNA pharmacogenomics based integrated model of miR-17-92 cluster in sorafenib resistant HCC cells reveals a strategy to forestall drug resistance

Ayesha Obaid, Amjad Ali, A. Naz, 2017, Scientific Reports.

Modelling and Simulation of Biological Regulatory Networks by Stochastic Petri Nets

J. Ahmad, Jamil Ahmad, Iftikhar A. Sheikh, 2016 .

Identification of Key Genes and Pathways Involved in Compensatory Pancreatic Beta Cell Hyperplasia During Insulin Resistance

R. Z. Paracha, Amjad Ali, J. Ahmad, 2018, Advances in Intelligent Systems and Computing.

Petri Net-Based Model of Helicobacter pylori Mediated Disruption of Tight Junction Proteins in Stomach Lining during Gastric Carcinoma

Ayesha Obaid, Amjad Ali, A. Naz, 2017, Front. Microbiol..

Model-based in silico analysis of the PI3K/Akt pathway: the elucidation of cross-talk between diabetes and breast cancer

Ayesha Obaid, Amjad Ali, A. Naz, 2018, PeerJ.

Petri Net modelling approach for analysing the behaviour of Wnt/ β -catenin and Wnt/Ca 2+ signalling pathways in arrhythmogenic right ventricular cardiomyopathy

J. Ahmad, Nazia Azim, Amnah Siddiqa, 2020 .

On the modeling and analysis of the biological regulatory network of NF ‐ κ B activation in HIV ‐ 1 infection

Samar H. K. Tareen, Amjad Ali, J. Ahmad, 2016 .

Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis

C. Evelo, M. Kutmon, Amjad Ali, 2018, Front. Physiol..

System level modeling and analysis of TNF-α mediated sphingolipid signaling pathway in neurological disorders for the prediction of therapeutic targets

Zartasha Mustansar, R. Z. Paracha, J. Ahmad, 2022, Frontiers in Physiology.

Structural modeling and analysis of dengue-mediated inhibition of interferon signaling pathway.

V. Azevedo, R. Z. Paracha, Amjad Ali, 2015, Genetics and molecular research : GMR.

Insilico study of anti-carcinogenic lysyl oxidase-like 2 inhibitors

Jamil Ahmad, Amjad Ali, Rehan Zafar Paracha, 2014, Comput. Biol. Chem..

Pan-genomics of plant pathogens and its applications

Nosheen Fatima, J. Ahmad, Amnah Siddiqa, 2020 .

Pan-genomics of plants and its applications

J. Ahmad, Amnah Siddiqa, Faiza Munir, 2020 .

Multivariate Covariance using Principal Component Analysis for Reconstruction of Bidirected Gene Regulatory Networks

Jamil Ahmad, Sharifullah Khan, Mehrosh Khalid, 2017, 2017 International Conference on Frontiers of Information Technology (FIT).

Dynamical modeling of the biological regulatory network of NF-kB activation in HIV-1

Zurah Bibi, U. Niazi, J. Ahmad, 2011, International Conference on Computer Networks and Information Technology.

PanRV: Pangenome-reverse vaccinology approach for identifications of potential vaccine candidates in microbial pangenome

Jamil Ahmad, Amjad Ali, Muhammad Rizwan, 2019, BMC Bioinformatics.

Formal modeling and analysis of the hexosamine biosynthetic pathway: role of O-linked N-acetylglucosamine transferase in oncogenesis and cancer progression

Aamir Shafi, Amjad Ali, Amnah Siddiqa, 2016, PeerJ.

Discrete modelling of p53-Mdm2 feedback loop

Jamil Ahmad, Umar Khan Niazi, Syeda Uzma Ali, 2011, 2011 IEEE International Conference on Granular Computing.

MicroRNA pharmacogenomics based integrated model of miR-17-92 cluster in sorafenib resistant HCC cells reveals a strategy to forestall drug resistance

Ayesha Obaid, Amjad Ali, A. Naz, 2017, Scientific Reports.

On the modeling and analysis of the biological regulatory network of NF-$${\kappa }$$κB activation in HIV-1 infection

Jamil Ahmad, Amjad Ali, Shah Khusro, 2016, Complex Adapt. Syst. Model..

Long non‐coding RNAs and their targets as potential biomarkers in breast cancer

R. Z. Paracha, Amjad Ali, J. Ahmad, 2021, IET systems biology.

Hybrid Modelling and Dynamical Analysis of Gene Regulatory Networks with Delays

Didier Lime, Gilles Bernot, Jean-Paul Comet, 2007, Complexus.

PanRV: Pangenome-reverse vaccinology approach for identifications of potential vaccine candidates in microbial pangenome

J. Baumbach, Amjad Ali, A. Naz, 2019, BMC Bioinformatics.

VacSol: a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive reverse vaccinology

Ayesha Obaid, Amjad Ali, A. Naz, 2017, BMC Bioinformatics.

Identification of crosstalk in Insulin pathway using Pathway Logic

Jamil Ahmad, Azmat Ali Khan, J. Ahmad, 2013, 2013 IEEE 9th International Conference on Emerging Technologies (ICET).

Structural evaluation of BTK and PKCδ mediated phosphorylation of MAL at positions Tyr86 and Tyr106

Jamil Ahmad, Amjad Ali, Rehan Zafar Paracha, 2014, Comput. Biol. Chem..

Model of the adaptive immune response system against HCV infection reveals potential immunomodulatory agents for combination therapy

Ayesha Obaid, Amjad Ali, A. Naz, 2018, Scientific Reports.

On the modelling and analysis of the regulatory network of dengue virus pathogenesis and clearance

Jamil Ahmad, Amjad Ali, Rehan Zafar Paracha, 2014, Comput. Biol. Chem..

Formal Modeling and Analysis of Biological Regulatory Networks Using SPIN

Umair Siddique, Jamil Ahmad, Usman Rauf, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

Qualitative modelling and analysis of the regulatory network of indoleamine 2, 3-dioxygenase in tumour immune escape

U. Niazi, J. Ahmad, J. Ashraf, 2011, International Conference on Computer Networks and Information Technology.

Parameter estimation of qualitative biological regulatory networks on high performance computing hardware

Jamil Ahmad, Aamir Shafi, Amjad Ali, 2018, BMC Systems Biology.

Formal Modeling of the Key Determinants of Hepatitis C Virus (HCV) Induced Adaptive Immune Response Network: An Integrative Approach to Map the Cellular and Cytokine-Mediated Host Immune Regulations

Jamil Ahmad, Amjad Ali, Ayesha Obaid, 2018, ICCSA.

Formal Modelling of Toll like Receptor 4 and JAK/STAT Signalling Pathways: Insight into the Roles of SOCS-1, Interferon-β and Proinflammatory Cytokines in Sepsis

Amjad Ali, Rehan Zafar Paracha, Babar Aslam, 2014, PloS one.

Rheumatoid arthritis: What have we learned about the causing factors?

M. Arshad, A. Bhatti, P. John, 2016, Pakistan journal of pharmaceutical sciences.

3D Structure Determination and Validation of mTORC2 using Computational Modeling Techniques

Amnah Siddiqa, Jamil Ahmad, Rehan Zafar Paracha, 2019, 2019 19th International Conference on Computational Science and Its Applications (ICCSA).

Analyzing the Behavior of Neuronal Pathways in Alzheimer's Disease Using Petri Net Modeling Approach

Jamil Ahmad, Amjad Ali, Zaheer-ul-Haq, 2018, Front. Neuroinform..

Modeling and analysis of the impacts of jet lag on circadian rhythm and its role in tumor growth

Amjad Ali, Hufsah Ashraf, Azka Hassan, 2018, PeerJ.

Invariance Kernel of Biological Regulatory Networks

Jamil Ahmad, Olivier F. Roux, J. Ahmad, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

Structural characterization of ANGPTL8 (betatrophin) with its interacting partner lipoprotein lipase

Amnah Siddiqa, Jamil Ahmad, Amjad Ali, 2016, Comput. Biol. Chem..

Computational modeling and analysis of the impacts of sleep deprivation on glucose stimulated insulin secretion

Jamil Ahmad, Amjad Ali, Hufsah Ashraf, 2019, Biosyst..

Parametric linear hybrid automata for complex environmental systems modeling

Jamil Ahmad, Olivier Roux, Samar H. K. Tareen, 2015, Front. Environ. Sci..

Discovery of medical experts

Jamil Ahmad, Muhammad Tanvir Afzal, Ammar Sohail, 2013, 2013 IEEE 9th International Conference on Emerging Technologies (ICET).

Modeling and analysis of the signaling crosstalk of PI3K, AMPK and MAPK with Timed Hybrid Petri Nets approach

Jamil Ahmad, Amnah Siddiqa, Rehan Zafar Paracha, 2017, 2017 17th International Conference on Computational Science and Its Applications (ICCSA).