Yunlong Liu

发表

Signal Transducers and Activators of Transcription-1 (STAT1) Regulates microRNA Transcription in Interferon γ-Stimulated HeLa Cells

Yadong Wang, Lang Li, Mingxiang Teng, 2010, PloS one.

Impact of human pathogenic micro-insertions and micro-deletions on post-transcriptional regulation.

Yaoqi Zhou, Huiying Zhao, D. Cooper, 2014, Human molecular genetics.

Predicting intrinsic disorder in proteins: an overview

A. Dunker, V. Uversky, B. Xue, 2009, Cell Research.

Characterizing the heterogeneity of triple-negative breast cancers using microdissected normal ductal epithelium and RNA-sequencing

F. Hyland, M. Ivan, G. Sledge, 2013, Breast Cancer Research and Treatment.

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.

Matthew Mort, Sean D Mooney, David N Cooper, 2009, Genome research.

Investigating DNA‐, RNA‐, and protein‐based features as a means to discriminate pathogenic synonymous variants

Yuedong Yang, Bela Stantic, Ping Zhang, 2017, Human mutation.

Estrogen Induces Global Reorganization of Chromatin Structure in Human Breast Cancer Cells

Liran Juan, Raphaël Mourad, Hai Lin, 2014, PloS one.

RegSNPs-Intron: A computational framework for prioritizing Intronic Single Nucleotide Variants in Human Genetic Disease

Michael T. Eadon, Yaoqi Zhou, M. Dolan, 2019, bioRxiv.

ExonImpact: Prioritizing Pathogenic Alternative Splicing Events

Yaoqi Zhou, Yuedong Yang, D. Cooper, 2017, Human mutation.

Characterizing the roles of long non-coding RNA in rat alcohol preference

Yadong Wang, Yunlong Liu, Weixing Feng, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

The Exosome Component Rrp6 Is Required for RNA Polymerase II Termination at Specific Targets of the Nrd1-Nab3 Pathway

A. Mosley, Yunlong Liu, Hongyu Gao, 2015, PLoS genetics.

FOXA2 promotes prostate cancer growth in the bone.

P. Nelson, R. Shi, Shu Yang, 2020, American journal of translational research.

Next generation MicroRNA sequencing to identify coronary artery disease patients at risk of recurrent myocardial infarction.

T. Skaar, Yunlong Liu, R. Kreutz, 2018, Atherosclerosis.

Induced Mist1 expression promotes remodeling of mouse pancreatic acinar cells.

Yunlong Liu, S. F. Konieczny, C. Goswami, 2012, Gastroenterology.

NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets

Yunlong Liu, Marcus R. Breese, M. Breese, 2013, Bioinform..

Genome-wide DNA methylation profiling in human breast tissue by Illumina TruSeq methyl capture EPIC sequencing and infinium methylationEPIC beadchip microarray

Chi Wang, Jinpeng Liu, Chunyan He, 2020, Epigenetics.

miR2Disease: a manually curated database for microRNA deregulation in human disease

Yadong Wang, Yunlong Liu, Mingxiang Teng, 2008, Nucleic Acids Res..

Novel specific microRNA biomarkers in idiopathic inflammatory bowel disease unrelated to disease activity

Noah C. Welker, M. Bronner, Yunlong Liu, 2014, Modern Pathology.

Amplification of distant estrogen response elements deregulates target genes associated with tamoxifen resistance in breast cancer.

Xun Lan, I. Thompson, K. Nephew, 2013, Cancer cell.

A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer

Yadong Wang, Yunlong Liu, Pearlly Yan, 2011, BMC Systems Biology.

Alcohol alters DNA methylation patterns and inhibits neural stem cell differentiation.

Kenneth P Nephew, K. Nephew, Mingxiang Teng, 2011, Alcoholism, clinical and experimental research.

HNRNPA 1 promotes recognition of splice site decoys by U 2 AF 2 in vivo

Sol Katzman, M. Haeussler, M. Toloue, 2018 .

HNRNPA1 promotes recognition of splice site decoys by U2AF2 in vivo

Sol Katzman, M. Haeussler, M. Toloue, 2017, bioRxiv.

The Influence of cis-Regulatory Elements on DNA Methylation Fidelity

Kenneth P. Nephew, Mingxiang Teng, Lang Li, 2012, PloS one.

MicroRNA cluster 221-222 and estrogen receptor alpha interactions in breast cancer.

C. Croce, M. Iorio, S. Volinia, 2010, Journal of the National Cancer Institute.

A new method for stranded whole transcriptome RNA-seq.

Haixu Tang, K. Nephew, D. Rusch, 2013, Methods.

Mapping the miRNA‐mRNA Interactome in Human Hepatocytes and Identification of Functional mirSNPs in Pharmacogenes

T. Skaar, Yunlong Liu, Nicholas R. Powell, 2021, Clinical pharmacology and therapeutics.

Prioritization of disease microRNAs through a human phenome-microRNAome network

Yadong Wang, Yunlong Liu, Mingxiang Teng, 2010, BMC Systems Biology.

Regulation of MicroRNA Expression by Rifampin in Human Hepatocytes

Lang Li, T. Skaar, D. Flockhart, 2013, Drug Metabolism and Disposition.

The Role and Therapeutic Potential of miRNAs in Colorectal Liver Metastasis

Guanglong Jiang, Yunlong Liu, Janaiah Kota, 2019, Scientific Reports.

Epigenetic targeting of ovarian cancer stem cells.

D. Matei, K. Nephew, F. Fang, 2014, Cancer research.

Regulation of a PRMT5/NF-κB Axis by Phosphorylation of PRMT5 at Serine 15 in Colorectal Cancer

Antja-Voy Hartley, Benlian Wang, Guanglong Jiang, 2020, International journal of molecular sciences.

Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance

Yunlong Liu, Curtis Balch, Kenneth P. Nephew, 2009, Bioinform..

Sesn3 deficiency promotes carcinogen-induced hepatocellular carcinoma via regulation of the hedgehog pathway.

X. Dong, Yunlong Liu, S. Liangpunsakul, 2019, Biochimica et biophysica acta. Molecular basis of disease.

Estimating breast tissue-specific DNA methylation age using next-generation sequencing data

S. Horvath, L. Hou, Chi Wang, 2020, Clinical Epigenetics.

TGF-β induces global changes in DNA methylation during the epithelial-to-mesenchymal transition in ovarian cancer cells

D. Matei, K. Nephew, Yunlong Liu, 2014, Epigenetics.

Genomic and Proteomic Analysis of the Impact of Mitotic Quiescence on the Engraftment of Human CD34+ Cells

Yunlong Liu, E. Srour, B. Chitteti, 2011, PloS one.

MMBIRFinder: A Tool to Detect Microhomology-Mediated Break-Induced Replication

Yunlong Liu, Matthew W. Segar, Cynthia J. Sakofsky, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

COPI transport complexes bind to specific RNAs in neuronal cells.

E. Androphy, A. Ebert, Yunlong Liu, 2013, Human molecular genetics.

regSNPs-splicing: a tool for prioritizing synonymous single-nucleotide substitution

Yuedong Yang, Matthew Mort, Weixing Feng, 2017, Human Genetics.

Simultaneous Inhibition of MEK and Hh Signaling Reduces Pancreatic Cancer Metastasis

Xiao-li Zhang, Jingwu Xie, Yunlong Liu, 2018, Cancers.

Induced PTF1a expression in pancreatic ductal adenocarcinoma cells activates acinar gene networks, reduces tumorigenic properties, and sensitizes cells to gemcitabine treatment

K. Scully, Yunlong Liu, S. F. Konieczny, 2018, Molecular oncology.

Model-based prediction of cis-acting RNA elements regulating tissue-specific alternative splicing

Yunlong Liu, Xin Wang, Guohua Wang, 2008, 2008 8th IEEE International Conference on BioInformatics and BioEngineering.

Transmembrane protein 88 (TMEM88) promoter hypomethylation is associated with platinum resistance in ovarian cancer.

D. Matei, K. Nephew, R. Emerson, 2015, Gynecologic oncology.

Tumor and Stem Cell Biology Epigenetic Targeting of Ovarian Cancer Stem Cells

D. Matei, K. Nephew, F. Fang, 2014 .

Genomic and Epigenomic Signatures in Ovarian Cancer Associated with Resensitization to Platinum Drugs.

Fang Fang, Guanglong Jiang, Chi Zhang, 2018, Cancer research.

Next-generation transcriptome sequencing of the premenopausal breast epithelium using specimens from a normal human breast tissue bank

Jarret Glasscock, M. Hickenbotham, S. Badve, 2014, Breast Cancer Research.

A dynamic time order network for time-series gene expression data analysis

Yang Xiang, Yunlong Liu, Kenneth P. Nephew, 2012, BMC Systems Biology.

Interferon-γ signaling is associated with BRCA1 loss-of-function mutations in high grade serous ovarian cancer

D. Matei, K. Nephew, H. Nakshatri, 2019, npj Precision Oncology.

Stranded Whole Transcriptome RNA‐Seq for All RNA Types

Haixu Tang, K. Nephew, D. Rusch, 2015, Current protocols in human genetics.

regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions

Yadong Wang, Yunlong Liu, Mingxiang Teng, 2012, Bioinform..

Rifampin Regulation of Drug Transporters Gene Expression and the Association of MicroRNAs in Human Hepatocytes

Todd C. Skaar, Hai Lin, Michael T. Eadon, 2016, Front. Pharmacol..

An ERα/modulator regulatory network in the breast cancer cells

Yunlong Liu, Kenneth P. Nephew, Tim Hui-Ming Huang, 2011, 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

Complete Transcriptome RNA-Seq.

Yunlong Liu, Fang Fang, Haixu Tang, 2017, Methods in molecular biology.

Empirical Bayes Model Comparisons for Differential Methylation Analysis

Kenneth P. Nephew, Mingxiang Teng, Guohua Wang, 2012, Comparative and functional genomics.

Regulation of MicroRNA Expression by Rifampin in Human Hepatocytes

Lang Li, T. Skaar, D. Flockhart, 2013, Drug Metabolism and Disposition.

Novel MicroRNA Signature to Differentiate Ulcerative Colitis from Crohn Disease: A Genome-Wide Study Using Next Generation Sequencing.

Noah C. Welker, M. Bronner, Yunlong Liu, 2017, MicroRNA.

Microarray analysis of thapsigargin — induced stress to the endoplasmic reticulum of mouse osteoblasts

H. Yokota, Yunlong Liu, K. Hamamura, 2008, Journal of Bone and Mineral Metabolism.

P3-07-03: One-Step Nucleic Acid Amplification (OSNA) for the Diagnosis of Sentinel Lymph Nodes of Breast Cancer – Results of the China Multicenter Study CBCSG-001c.

Yunlong Liu, Yafan Wang, T. Ouyang, 2011 .

System modeling reveals the molecular mechanisms of HSC cell cycle alteration mediated by Maff and Egr3 under leukemia

Yunlong Liu, Lei Liu, Gang Liu, 2017, BMC Systems Biology.

Genome-Wide Discovery of Drug-Dependent Human Liver Regulatory Elements

N. Trinklein, K. Giacomini, K. Morrissey, 2014, PLoS genetics.

Estimating breast tissue-specific DNA methylation age using next-generation sequencing data

S. Horvath, L. Hou, Chi Wang, 2020, Clinical Epigenetics.

Prioritization of disease microRNAs through a human phenome-microRNAome network

Yadong Wang, Mingxiang Teng, Qinghua Jiang, 2010, BMC Systems Biology.

xIP-seq Platform: An Integrative Framework for High-Throughput Sequencing Data Analysis

Mingxiang Teng, Xin Wang, Guohua Wang, 2009, 2009 Ohio Collaborative Conference on Bioinformatics.

DDIG-in: detecting disease-causing genetic variations due to frameshifting indels and nonsense mutations employing sequence and structural properties at nucleotide and protein levels

Yunlong Liu, Abdul Sattar, Yaoqi Zhou, 2015, Bioinform..

CpG island shore methylation regulates caveolin-1 expression in breast cancer

J W Gray, J. Gray, K. Nephew, 2012, Oncogene.

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.

S. Mooney, D. Cooper, M. Mort, 2009, Genome research.

TGF-β induces global changes in DNA methylation during the epithelial-to-mesenchymal transition in ovarian cancer cells

D. Matei, K. Nephew, Yunlong Liu, 2014, Epigenetics.

Amplification of distant estrogen response elements deregulates target genes associated with tamoxifen resistance in breast cancer.

Xun Lan, K. Nephew, Lang Li, 2013, Cancer cell.