M. Quiñones

发表

The Impact of Anthelmintic Treatment on Human Gut Microbiota Based on Cross-Sectional and Pre- and Postdeworming Comparisons in Western Kenya

I. Vujkovic-Cvijin, Y. Belkaid, R. Anderson, 2019, mBio.

Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses

Andrew J. Oler, A. Gabrielian, Y. Huyen, 2014, PeerJ.

Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum

X. Su, Kairong Cui, K. Zhao, 2011, BMC Genomics.

APECED‐Associated Hepatitis: Clinical, Biochemical, Histological and Treatment Data From a Large, Predominantly American Cohort

Y. Belkaid, D. Kleiner, E. Chitsaz, 2020, Hepatology.

The Effects of Recombinant Human Lactoferrin on Immune Activation and the Intestinal Microbiome Among Persons Living with Human Immunodeficiency Virus and Receiving Antiretroviral Therapy.

K. H. Hullsiek, T. Schacker, J. Baker, 2019, The Journal of infectious diseases.

UTR introns, antisense RNA and differentially spliced transcripts between Plasmodium yoelii subspecies

X. Su, Wenting Zhao, Shengfa Liu, 2016, Malaria Journal.

Composition of the intestinal microbiota in extended-spectrum β-lactamase-producing Enterobacteriaceae carriers and non-carriers in Thailand.

M. Quiñones, P. Kiratisin, M. Otto, 2019, International journal of antimicrobial agents.

Probiotic/prebiotic supplementation of antiretrovirals improves gastrointestinal immunity in SIV-infected macaques.

C. Deming, D. Hazuda, M. Lederman, 2013, The Journal of clinical investigation.

Dendritic cells expressing immunoreceptor CD300f are critical for controlling chronic gut inflammation

J. Coligan, Y. Belkaid, M. Quiñones, 2017, The Journal of clinical investigation.

Impact of Acute HIV Infection and Early Antiretroviral Therapy on the Human Gut Microbiome.

Y. Belkaid, J. Brenchley, J. Ananworanich, 2019, Open forum infectious diseases.

Long-term antibiotic exposure promotes mortality after systemic fungal infection by driving lymphocyte dysfunction and systemic escape of commensal bacteria.

C. Deming, S. Conlan, J. Segre, 2022, Cell host & microbe.

An Agent-Based Modeling and Simulation Environment for Dynamic Biological Systems

D. Lun, Michael Tartakovsky, Y. Huyen, 2012 .

Commensal–dendritic-cell interaction specifies a unique protective skin immune signature

Christoph Wilhelm, Kenneth M. Murphy, Miriam Merad, 2015, Nature.

The extent of sequence complementarity correlates with the potency of cellular miRNA-mediated restriction of HIV-1

Kuan-Teh Jeang, Mariam Quiñones, Shu-Yun Le, 2012, Nucleic acids research.

UTR introns, antisense RNA and differentially spliced transcripts between Plasmodium yoelii subspecies

X. Su, Wenting Zhao, Shengfa Liu, 2016, Malaria Journal.

A custom 148 gene‐based resequencing chip and the SNP explorer software: new tools to study antibody deficiency

S. Chanock, M. Yeager, J. Orange, 2010, Human mutation.

Compartmentalized Control of Skin Immunity by Resident Commensals

C. Deming, S. Conlan, H. Kong, 2012, Science.

Strategies of genetic engineering for the obtainment of transgenic plants resistant to geminiviruses. Experience at CENSA.

M. Quiñones, A. Vega, Y. Marti˜nez, 2007 .

Global selective sweep of a highly inbred genome of the cattle parasite Neospora caninum

Andrew J. Oler, S. Cleaveland, J. Wastling, 2019, Proceedings of the National Academy of Sciences.

Plasmodium genetic loci linked to host cytokine and chemokine responses

X. Su, K. Zhao, M. Zilversmit, 2014, Genes and Immunity.

Colitis susceptibility in p47phox−/− mice is mediated by the microbiome

C. Deming, J. Segre, C. Bryant, 2016, Microbiome.

Intraluminal containment of commensal outgrowth in the gut during infection-induced dysbiosis.

A. Dzutsev, Y. Belkaid, G. Trinchieri, 2013, Cell host & microbe.

Microbiota-Dependent Sequelae of Acute Infection Compromise Tissue-Specific Immunity

Ronald N. Germain, Michael Y. Gerner, Yasmine Belkaid, 2015, Cell.

Patterns of microRNA Expression in Non-Human Primate Cells Correlate with Neoplastic Development In Vitro

M. Quiñones, K. Peden, B. Teferedegne, 2010, PloS one.

“METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI’s sequence read archive”

Wongyu Kim, Mariam Quiñones, Darrell E. Hurt, 2020, BMC Bioinformatics.

Dysbiotic Bacteria Translocate in Progressive SIV Infection

Z. Klase, J. Brenchley, M. Quiñones, 2014, Mucosal Immunology.

Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis

Meghan Coakley McCarthy, David Liou, Joe Wan, 2018, Bioinform..

Colitis susceptibility in p47phox−/− mice is mediated by the microbiome

C. Deming, J. Segre, S. Holland, 2016, Microbiome.

“METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI’s sequence read archive”

I. Vujkovic-Cvijin, Y. Belkaid, M. Quiñones, 2020, BMC Bioinform..

In depth annotation of the Anopheles gambiae mosquito midgut transcriptome

M. Quiñones, J. Ribeiro, A. Molina-Cruz, 2014, BMC Genomics.

Effect of PCR extension temperature on high-throughput sequencing.

X. Su, Kairong Cui, K. Zhao, 2011, Molecular and biochemical parasitology.

A Novel Field-Deployable Method for Sequencing and Analyses of Henipavirus Genomes From Complex Samples on the MinION Platform.

P. MacMenamin, M. Quiñones, Stephanie N. Seifert, 2019, The Journal of infectious diseases.

Whole-Genome Sequencing of Mycobacterium tuberculosis Provides Insight into the Evolution and Genetic Composition of Drug-Resistant Tuberculosis in Belarus

Andrew J. Oler, B. Birren, K. Wollenberg, 2016, Journal of Clinical Microbiology.

Commensal–dendritic-cell interaction specifies a unique protective skin immune signature

Jonathan L. Linehan, Allyson L. Byrd, C. Deming, 2015, Nature.

Probiotic/prebiotic supplementation of antiretrovirals improves gastrointestinal immunity in SIV-infected macaques.

C. Deming, D. Hazuda, M. Lederman, 2013, The Journal of clinical investigation.