J. Earl

发表

The Bacterial Guide to Designing a Diversified Gene Portfolio

K. Innamorati, J. Earl, Surya D. Aggarwal, 2020, The Pangenome.

Nasopharyngeal microbiome composition associated with Streptococcus pneumoniae colonization suggests a protective role of Corynebacterium in young children

M. Pichichero, J. Earl, Lei Xu, 2021, PloS one.

Panel 3: Genomics, precision medicine and targeted therapies.

M. Pichichero, J. Mell, A. Ryan, 2019, International journal of pediatric otorhinolaryngology.

Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes

Archana S Bhat, Sergey V. Balashov, J. Mell, 2018, bioRxiv.

Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes

Archana S Bhat, Sergey V. Balashov, J. Mell, 2018, Microbiome.

Streptococcus pneumoniae Supragenome Hybridization Arrays for Profiling of Genetic Content and Gene Expression

J. Earl, G. Ehrlich, N. Hiller, 2015, Current protocols in microbiology.

The bacterial microbiota of Hunner lesion interstitial cystitis/bladder pain syndrome

Archana S Bhat, J. Mell, J. Earl, 2021, BJU international.

Genome rearrangements induce biofilm formation in Escherichia coli C – an old model organism with a new application in biofilm research

Sergey V. Balashov, M. Xiao, J. Mell, 2019, BMC Genomics.

Genome rearrangements induce biofilm formation in Escherichia coli C – an old model organism with a new application in biofilm research

Sergey V. Balashov, M. Xiao, J. Mell, 2019, bioRxiv.

The distributed genome hypothesis as a rubric for understanding evolution in situ during chronic bacterial biofilm infectious processes.

J. Earl, G. Ehrlich, N. Hiller, 2010, FEMS immunology and medical microbiology.

HIV- Bidirectional Encoder Representations From Transformers: A Set of Pretrained Transformers for Accelerating HIV Deep Learning Tasks

M. Nonnemacher, J. Earl, B. Wigdahl, 2022, Frontiers in Virology.

Development and Validation of an Haemophilus influenzae Supragenome Hybridization (SGH) Array for Transcriptomic Analyses

J. Earl, G. Ehrlich, N. Hiller, 2014, PloS one.

Genome of alkaliphilic Bacillus pseudofirmus OF 4 reveals adaptations

D. M. Ivey, Karl A. Hassan, Masahiro Ito, 2011 .

Evidence for the Existence of a Bacterial Etiology for Alzheimer’s Disease and for a Temporal-Spatial Development of a Pathogenic Microbiome in the Brain

J. Earl, G. Ehrlich, Yves Moné, 2022, bioRxiv.

Nontypeable Haemophilus influenzae Genetic Islands Associated with Chronic Pulmonary Infection

J. Gilsdorf, J. Earl, G. Ehrlich, 2012, PloS one.

Species-Level Profiling of Ixodes pacificus Bacterial Microbiomes Reveals High Variability Across Short Spatial Scales at Different Taxonomic Resolutions.

Archana S Bhat, J. Mell, J. Earl, 2021, Genetic testing and molecular biomarkers.

Comparing culture and molecular methods for the identification of microorganisms involved in necrotizing soft tissue infections

S. Poulsen, P. Nielsen, J. Earl, 2016, BMC Infectious Diseases.

Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae Using a modification of the finite supragenome model

Garth D Ehrlich, Evan Powell, Paul Stoodley, 2011, BMC Genomics.

Interaction between the microbiome and TP53 in human lung cancer

Eric C. Polley, Paul S. Meltzer, James R. White, 2018, Genome Biology.

8-24-2018 Interaction between the microbiome and TP 53 in human lung cancer

Archana S Bhat, Sergey V. Balashov, Julia Oh, 2018 .

Nasopharyngeal microbiome analyses in otitis-prone and otitis-free children.

P. Bajorski, M. Pichichero, J. Earl, 2021, International journal of pediatric otorhinolaryngology.

Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates

J. Earl, G. Ehrlich, A. Campagnari, 2011, BMC Genomics.

The Tsk2/+ mouse fibrotic phenotype is due to a gain-of-function mutation in the PIIINP segment of the Col3a1 gene

M. Whitfield, J. Earl, G. Ehrlich, 2014, The Journal of investigative dermatology.

Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes

Archana S Bhat, Sergey V. Balashov, J. Mell, 2018, bioRxiv.

Analysis Methods for Shotgun Metagenomics

Gregory Ditzler, Gail L. Rosen, Stephen Woloszynek, 2018 .

HIV-1 Genetic Variation Resulting in the Development of New Quasispecies Continues to Be Encountered in the Peripheral Blood of Well-Suppressed Patients

J. Mell, M. Nonnemacher, J. Earl, 2016, PloS one.

Comparative Genomic Analyses of 17 Clinical Isolates of Gardnerella vaginalis Provide Evidence of Multiple Genetically Isolated Clades Consistent with Subspeciation into Genovars

B. Hall, Adam C. Retchless, J. Earl, 2012, Journal of bacteriology.

Whole genome sequencing of Streptomyces actuosus ISP-5337, Streptomyces sioyaensis B-5408, and Actinospica acidiphila B-2296 reveals secondary metabolomes with antibiotic potential

J. Earl, G. Ehrlich, R. Ehrlich, 2021, Biotechnology reports.

Comparative Genomic Analyses of the Moraxella catarrhalis Serosensitive and Seroresistant Lineages Demonstrate Their Independent Evolution

Zhemin Zhou, J. Earl, G. Ehrlich, 2016, Genome biology and evolution.

Interaction between the microbiome and TP53 in human lung cancer

Archana S Bhat, Sergey V. Balashov, Julia Oh, 2018, Genome Biology.

Microbiome-TP53 Gene Interaction in Human Lung Cancer

Archana S Bhat, Sergey V. Balashov, Julia Oh, 2018, bioRxiv.

Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates

J. Gilsdorf, J. Earl, G. Ehrlich, 2013, BMC Genomics.

Differences in Genotype and Virulence among Four Multidrug-Resistant Streptococcus pneumoniae Isolates Belonging to the PMEN1 Clone

H. Tettelin, A. Tomasz, S. Daugherty, 2011, PloS one.

Virulence Potential and Genome-Wide Characterization of Drug Resistant Streptococcus pneumoniae Clones Selected In Vivo by the 7-Valent Pneumococcal Conjugate Vaccine

A. Tomasz, J. Earl, G. Ehrlich, 2013, PloS one.

Meta-omic characterization of the marine invertebrate microbial consortium that produces the chemotherapeutic natural product ET-743.

Hye Kyong Kweon, Robert M. Williams, D. Sherman, 2011, ACS chemical biology.

Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4.

D. M. Ivey, Karl A. Hassan, A. Kolstø, 2011, Environmental microbiology.

Generation of Genic Diversity among Streptococcus pneumoniae Strains via Horizontal Gene Transfer during a Chronic Polyclonal Pediatric Infection

Justin S. Hogg, R. Sampath, J. Earl, 2010, PLoS pathogens.

The Tsk2/+ mouse fibrotic phenotype is due to a gain-of-function mutation in the PIIINP segment of the Col3a1 gene

M. Whitfield, J. Earl, G. Ehrlich, 2014, The Journal of investigative dermatology.

Evidence supportive of a bacterial component in the etiology for Alzheimer’s disease and for a temporal-spatial development of a pathogenic microbiome in the brain

J. Earl, Bhaswati Sen, G. Ehrlich, 2023, Frontiers in cellular and infection microbiology.