A. Ottesen

发表

Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States.

Peter S Evans, Ümit V. Çatalyürek, Daniel Janies, 2016, The Journal of infectious diseases.

Distributed under Creative Commons Cc-by 4.0 an Evaluation of Alternative Methods for Constructing Phylogenies from Whole Genome Sequence Data: a Case Study with Salmonella Background

Yi Chen, Hugh Rand, Errol Strain, 2022 .

Identification of a salmonellosis outbreak by means of molecular sequencing.

Errol Strain, Marc W Allard, Jianghong Meng, 2011, The New England journal of medicine.

Shifts in spinach microbial communities after chlorine washing and storage at compliant and abusive temperatures.

Yaguang Luo, S. Rideout, E. Reed, 2018, Food microbiology.

Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak

R. Colwell, M. Allard, J. White, 2016, BMC Microbiology.

Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

J. White, C. Grim, K. Jarvis, 2015, BMC Microbiology.

Avoiding Pandemic Fears in the Subway and Conquering the Platypus

R. Knight, Y. Vázquez-Baeza, A. Ottesen, 2016, mSystems.

Rain induces temporary shifts in epiphytic bacterial communities of cucumber and tomato fruit

A. Ottesen, S. Allard, S. Micallef, 2020, Scientific Reports.

Solanum lycopersicum (tomato) hosts robust phyllosphere and rhizosphere bacterial communities when grown in soil amended with various organic and synthetic fertilizers.

E. Brown, A. Ottesen, S. Allard, 2016, The Science of the total environment.

Comparison of Microbial Communities Isolated from Feces of Asymptomatic Salmonella-Shedding and Non-Salmonella Shedding Dairy Cows

Bradd J. Haley, J. Karns, A. Ottesen, 2016, Front. Microbiol..

Metabolically-active bacteria in reclaimed water and ponds revealed using bromodeoxyuridine DNA labeling coupled with 16S rRNA and shotgun sequencing.

E. Mongodin, A. Ottesen, P. Ramachandran, 2020, Water research.

Optimizing source tracking of Listeria monocytogenes with quasimetagenomics and integrated long and short read sequencing

M. Pop, N. Nagarajan, D. Bertrand, 2020 .

Microbiota of the Hickey Run Tributary of the Anacostia River

M. Pop, M. Mammel, E. Reed, 2019, Microbiology Resource Announcements.

TaxaTarget: Fast, Sensitive, and Precise Classification of Microeukaryotes in Metagenomic Data

M. Pop, A. Ottesen, Hugh Rand, 2021 .

Co-Enriching Microflora Associated with Culture Based Methods to Detect Salmonella from Tomato Phyllosphere

Rob Knight, Antonio Gonzalez, Marc Allard, 2013, PloS one.

The impact of systemic and copper pesticide applications on the phyllosphere microflora of tomatoes

S. Rideout, E. Brown, A. Ottesen, 2014, Journal of the science of food and agriculture.

Low occurrence of multi-antimicrobial and heavy metal resistance in Salmonella enterica from wild birds in the United States.

A. Ottesen, E. Dudley, H. Tate, 2021, Environmental microbiology.

Metagenomic Description of Preenrichment and Postenrichment of Recalled Chapati Atta Flour Using a Shotgun Sequencing Approach

E. Reed, A. Ottesen, P. Ramachandran, 2018, Genome Announcements.

Quasimetagenomic source tracking of Listeria monocytogenes from naturally contaminated ice cream

E. Reed, E. Brown, E. Strain, 2019, BMC Infectious Diseases.

Full chloroplast genome assembly and phylogeny of “red and “yellow” Bixa orellana, “achiote”; popular source of food coloring and traditional medicine.

Jeffery T. Davis, Sara M. Handy, D. Erickson, 2020 .

Using full chloroplast genomes of ‘red’ and ‘yellow’ Bixa orellana (achiote) for kmer based identification and phylogenetic inference

David L. Erickson, Sara M. Handy, D. Erickson, 2020, BMC Genomics.

Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth

R. Sanderson, E. Reed, E. Brown, 2021, Microbiology Resource Announcements.

Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads

M. Pop, N. Nagarajan, D. Bertrand, 2021, BMC Genomics.

Metagenomics of pasteurized and unpasteurized gouda cheese using targeted 16S rDNA sequencing

Padmini Ramachandran, Andrea Ottesen, E. Reed, 2018, BMC Microbiology.

Microbiomes Associated With Foods From Plant and Animal Sources

J. White, C. Grim, K. Jarvis, 2018, Front. Microbiol..

Naturally occurring toxins in plants.

A. Ottesen, B. Magnuson, 2010 .

Taxonomic and Functional Shifts in the Sprout Spent Irrigation Water Microbiome in Response to Salmonella Contamination of Alfalfa Seeds

E. Reed, E. Brown, A. Ottesen, 2020, Applied and Environmental Microbiology.

Agricultural Practices Influence Salmonella Contamination and Survival in Pre-harvest Tomato Production

M. Reiter, S. Rideout, E. Reed, 2018, Front. Microbiol..

Recent and emerging innovations in Salmonella detection: a food and environmental perspective

K. Jarvis, E. Brown, A. Ottesen, 2016, Microbial biotechnology.

Correlation of Salmonella enterica and Listeria monocytogenes in Irrigation Water to Environmental Factors, Fecal Indicators, and Bacterial Communities

S. Rideout, E. Reed, A. Ottesen, 2021, Frontiers in Microbiology.

Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato)

R. Knight, M. Allard, J. White, 2013, BMC Microbiology.

Genomics of foodborne pathogens for microbial food safety.

Padmini Ramachandran, Ruth Timme, Maria Hoffmann, 2018, Current opinion in biotechnology.

Metagenomics of pasteurized and unpasteurized gouda cheese using targeted 16S rDNA sequencing

E. Reed, A. Ottesen, P. Ramachandran, 2018, BMC Microbiology.

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability

J. White, A. Ottesen, Jignasa Patel, 2012, PloS one.

An analysis of Echinacea chloroplast genomes: Implications for future botanical identification

David L. Erickson, Sara M. Handy, V. Funk, 2017, Scientific Reports.

Impact of routine sanitation on the microbiomes in a fresh produce processing facility.

Yaguang Luo, S. Rideout, A. Ottesen, 2019, International journal of food microbiology.

Characterization of microflora in Latin-style cheeses by next-generation sequencing technology

Marc W Allard, M. Allard, J. White, 2012, BMC Microbiology.

Food Microbiomes: A New Paradigm for Food and Food Ecology

A. Ottesen, P. Ramachandran, 2019, Food Microbiology.

Title Baseline survey of the anatomical microbial ecology of an important food plant : Solanum lycopersicum ( tomato ) Permalink

R. Knight, M. Allard, J. White, 2013 .

HPLC-UV, Metabarcoding and Genome Skims of Botanical Dietary Supplements: A Case Study in Echinacea

Sara M. Handy, D. Erickson, A. Ottesen, 2021, Planta Medica.

MitochonTrakr: a reference collection of high-quality mitochondrial genomes for detecting insect species in food products

M. Mammel, A. Ottesen, P. Ramachandran, 2019 .

Impact of organic and conventional management on the phyllosphere microbial ecology of an apple crop.

J. White, A. Ottesen, M. Newell, 2009, Journal of food protection.

The microbial ecology and horticultural sustainability of organically and conventionally managed apples

Andrea Ruth Ottesen, A. Ottesen, 2008 .

Comparing source of agricultural contact water and the presence of fecal indicator organisms on the surface of 'juliet' grape tomatoes.

A. Ottesen, M. Newell, C. Walsh, 2013, Journal of food protection.

Bacterial community diversity and variation in spray water sources and the tomato fruit surface

J. White, A. Ottesen, C. Walsh, 2011, BMC Microbiology.

High-Resolution Microbiome Profiling for Detection and Tracking of Salmonella enterica

J. White, C. Grim, K. Jarvis, 2017, Front. Microbiol..

Population dynamics of Vibrio spp. associated with marine sponge microcosms

M. Fischer, E. Brown, M. Hoffmann, 2010, The ISME Journal.

Application of Quasimetagenomics Methods to Define Microbial Diversity and Subtype Listeria monocytogenes in Dairy and Seafood Production Facilities

Susan R. Leonard, R. Timme, M. Mammel, 2022, bioRxiv.

Metagenome tracking biogeographic agroecology: Phytobiota of tomatoes from Virginia, Maryland, North Carolina and California.

S. Rideout, E. Reed, E. Strain, 2019, Food microbiology.

Insect exclusion limits variation in bacterial microbiomes of tomato flowers and fruit

E. Brown, A. Ottesen, S. Allard, 2018, Journal of applied microbiology.

Using a Control to Better Understand Phyllosphere Microbiota

M. Allard, J. White, E. Reed, 2016, PloS one.

Global transcriptomic analyses of Salmonella enterica in Iron-depleted and Iron-rich growth conditions

Joshua Xu, C. Grim, A. Ottesen, 2019, BMC Genomics.

Reconstructing a herbivore’s diet using a novel rbcL DNA mini-barcode for plants

David L. Erickson, Norman A. Bourg, W. McShea, 2017, AoB PLANTS.

Advancing antimicrobial resistance monitoring in surface waters with metagenomic and quasimetagenomic methods

C. Boucher, P. McDermott, Shaohua Zhao, 2022, bioRxiv.

THE EFFECT OF ORGANIC AND CONVENTIONAL MANAGEMENT PROGRAMS ON APPLE AND ASIAN PEAR TREE GROWTH, PRODUCTIVITY, EXPENSES AND REVENUES IN A HOT, HUMID CLIMATE

A. Ottesen, E. Leone, J. Hanson, 2011 .

Microbiome convergence following sanitizer treatment and identification of sanitizer resistant species from spinach and lettuce rinse water.

Yaguang Luo, S. Rideout, A. Ottesen, 2019, International journal of food microbiology.

Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak

R. Colwell, M. Allard, J. White, 2016, BMC Microbiology.

bettercallsal: better calling of Salmonella serotypes from enrichment cultures using shotgun metagenomic profiling and its application in an outbreak setting

M. Mammel, C. Grim, K. Jarvis, 2023, bioRxiv.

Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads

M. Pop, N. Nagarajan, D. Bertrand, 2021, BMC Genomics.

The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.

R. Agarwala, B. Bruce, P. Gerner-Smidt, 2022, Journal of food protection.

Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection

M. Allard, J. White, E. Brown, 2012, BMC Research Notes.

Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

J. White, C. Grim, K. Jarvis, 2015, BMC Microbiology.

Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection

M. Allard, J. White, Marc Allard, 2012, BMC Research Notes.

Development of a Reference Standard Library of Chloroplast Genome Sequences, GenomeTrakrCP

Sara M. Handy, R. Timme, J. Wen, 2017, Planta Medica.

Sequencing the Vine of the Soul: Full Chloroplast Genome Sequence of Banisteriopsis caapi

Sara M. Handy, R. Vasquez, Yan Luo, 2018, Genome Announcements.

Rain induces temporary shifts in epiphytic bacterial communities of cucumber and tomato fruit

A. Ottesen, S. Allard, S. Micallef, 2020, Scientific Reports.

Global transcriptomic analyses of Salmonella enterica in Iron-depleted and Iron-rich growth conditions

Joshua Xu, C. Grim, A. Ottesen, 2019, BMC Genomics.

Fecal microbiomes of laboratory beagles receiving antiparasitic formulations in an experimental setting

P. McDermott, M. Mammel, E. Reed, 2023, bioRxiv.

Application of quasimetagenomics methods to define microbial diversity and subtype Listeria monocytogenes in dairy and seafood production facilities

Susan R. Leonard, R. Timme, M. Mammel, 2023, Microbiology spectrum.

Metagenome tracking biogeographic agroecology: Phytobiota of tomatoes from Virginia, Maryland, North Carolina and California.

S. Rideout, E. Reed, E. Strain, 2019, Food microbiology.

An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella

M. Allard, N. González-Escalona, E. Strain, 2014, PeerJ.

Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States.

Ümit V. Çatalyürek, D. Janies, M. Allard, 2016, The Journal of infectious diseases.