Nathan D Hicks

发表

Genomic Epidemiology of the Haitian Cholera Outbreak: a Single Introduction Followed by Rapid, Extensive, and Continued Spread Characterized the Onset of the Epidemic

Jonathan Crabtree, Geeta Shakya, Talima Pearson, 2014, mBio.

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

Paul Wilmes, Thomas Sauter, Patrick May, 2015, npj Biofilms and Microbiomes.

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats.

Maliha Aziz, Paul Keim, Jason W Sahl, 2016, Microbial genomics.

Digitally Barcoding Mycobacterium tuberculosis Reveals In Vivo Infection Dynamics in the Macaque Model of Tuberculosis

M. Chase, S. Fortune, J. Flynn, 2017, mBio.

The Northern Arizona SNP Pipeline (NASP): accurate, flexible, and rapid identification of SNPs in WGS datasets

Crystal M. Hepp, D. Engelthaler, P. Keim, 2016, bioRxiv.

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics

P. May, C. Laczny, L. Lebrun, 2020, Nature microbiology.

Evaluation of a BK virus real-time PCR assay designed using novel bioinformatics technology.

Nathan D Hicks, G. Tsongalis, J. Lefferts, 2010, Experimental and molecular pathology.

Structural and functional insight into the Mycobacterium tuberculosis protein PrpR reveals a novel type of transcription factor

S. Fortune, J. Sacchettini, Nathan D Hicks, 2019, Nucleic acids research.

A natural polymorphism of Mycobacterium tuberculosis in the esxH gene disrupts immunodomination by the TB10.4-specific CD8 T cell response

S. Fortune, S. Le Gall, C. Sassetti, 2020, PLoS pathogens.

Mutations in dnaA and a cryptic interaction site increase drug resistance in Mycobacterium tuberculosis

Charles L. Dulberger, S. Fortune, Nathan D Hicks, 2020, PLoS pathogens.

Loss of RNase J leads to multi-drug tolerance and accumulation of highly structured mRNA fragments in Mycobacterium tuberculosis

S. Fortune, Scarlet S. Shell, Nathan D Hicks, 2022, bioRxiv.

Establishment Efficiency Among Clones of the Malaria Parasite, Plasmodium mexicanum, for Mixed-Clone Infections in Its Natural Lizard Host

Nathan D Hicks, J. Schall, 2013, The Journal of parasitology.

Bacterial Genome-Wide Association Identifies Novel Factors That Contribute to Ethionamide and Prothionamide Susceptibility in Mycobacterium tuberculosis

S. Fortune, Nathan D Hicks, Yanlin Zhao, 2019, mBio.

Dynamics of clonal diversity in natural infections of the malaria parasite Plasmodium mexicanum in its free-ranging lizard host

Nathan D Hicks, J. Schall, 2014, Parasitology Research.

Tuberculosis treatment failure associated with evolution of antibiotic resilience

Charles L. Dulberger, B. Aldridge, S. Fortune, 2022, bioRxiv.

Cryptococcus gattii in North American Pacific Northwest: Whole-Population Genome Analysis Provides Insights into Species Evolution and Dispersal

D. Engelthaler, G. Huttley, T. Sorrell, 2014, mBio.

Dynamics of clonal diversity in natural infections of the malaria parasite Plasmodium mexicanum in its free-ranging lizard host

Nathan D Hicks, J. Schall, 2014, Parasitology Research.

Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing

Faramarz Valafar, Paul Keim, David E. Smith, 2015, PloS one.

More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes

P. Keim, Nathan D Hicks, J. Schupp, 2016, PloS one.

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

Nitin S. Baliga, Paul Wilmes, Patrick May, 2014, Nature Communications.

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

C. Laczny, L. Lebrun, P. Wilmes, 2017, Standards in Genomic Sciences.

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics

P. May, C. Laczny, L. Lebrun, 2020, Nature Microbiology.

Clinically prevalent mutations in Mycobacterium tuberculosis alter propionate metabolism and mediate multidrug tolerance

B. Zhao, S. Fortune, Q. Jin, 2018, Nature Microbiology.

High-throughput phenogenotyping of Mycobacteria tuberculosis clinical strains reveals bacterial determinants of treatment outcomes

Maximillian G. Marin, M. Chase, S. Fortune, 2023, bioRxiv.

Insights into Species Evolution and Dispersal Northwest : Whole-Population Genome Analysis Provides in North American Pacific Cryptococcus gattii 2014

D. Engelthaler, G. Huttley, T. Sorrell, 2014 .

Rifampicin and rifabutin resistance in 1000 Mycobacterium tuberculosis clinical isolates

S. Fortune, R. Calderón, M. Murray, 2018, bioRxiv.