E. Taboada

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A Framework for Assessing the Concordance of Molecular Typing Methods and the True Strain Phylogeny of Campylobacter jejuni and C. coli Using Draft Genome Sequence Data

Eduardo N. Taboada, C. Carrillo, Peter Kruczkiewicz, 2012, Front. Cell. Inf. Microbio..

Identification of Salmonella enterica species- and subgroup-specific genomic regions using Panseq 2.0.

V. Gannon, A. Villegas, A. Kropinski, 2011, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

Eduardo N. Taboada, Victor P. J. Gannon, John H. E. Nash, 2016, PloS one.

Enhanced microbiological surveillance reveals that temporal case clusters contribute to the high rates of campylobacteriosis in a model agroecosystem.

E. Taboada, Valerie F. Boras, G. D. Inglis, 2019, International journal of medical microbiology : IJMM.

A Systematic Review Characterizing On-Farm Sources of Campylobacter spp. for Broiler Chickens

Eduardo N. Taboada, E. Taboada, L. Waddell, 2014, PloS one.

Campylobacter jejuni Strain Dynamics in a Raccoon (Procyon lotor) Population in Southern Ontario, Canada: High Prevalence and Rapid Subtype Turnover

Eduardo N. Taboada, V. Gannon, S. Mutschall, 2020, Frontiers in Veterinary Science.

An enhanced technique combining pre-enrichment and passive filtration increases the isolation efficiency of Campylobacter jejuni and Campylobacter coli from water and animal fecal samples.

Eduardo N. Taboada, E. Topp, V. Gannon, 2012, Journal of Microbiological Methods.

Genome-wide identification of geographical segregated genetic markers in Salmonella enterica serovar Typhimurium variant 4,[5],12:i:-

Eduardo N. Taboada, E. Taboada, G. Manfreda, 2018, Scientific Reports.

Detection of Genetic Diversity in Campylobacter jejuni Isolated from a Commercial Turkey Flock Using flaA Typing, MLST Analysis and Microarray Assay

E. Taboada, H. Hotzel, R. Ehricht, 2013, PloS one.

Comparative genomics profiling of clinical isolates of Aeromonas salmonicida using DNA microarrays

S. Foote, C. Luebbert, C. Carrillo, 2006, BMC Genomics.

Rapid Determination of Escherichia coli O157:H7 Lineage Types and Molecular Subtypes by Using Comparative Genomic Fingerprinting

Eduardo N. Taboada, Chad R. Laing, V. Gannon, 2008, Applied and Environmental Microbiology.

Methodologies towards the development of an oligonucleotide microarray for determination of Salmonella serotypes.

P. Fields, E. Taboada, Catherine Yoshida, 2007, Journal of microbiological methods.

The Genetic Bases for the Variation in the Lipo-oligosaccharide of the Mucosal Pathogen, Campylobacter jejuni

Eduardo N. Taboada, M. Gilbert, W. Wakarchuk, 2002, The Journal of Biological Chemistry.

Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion

Eduardo N. Taboada, J. Corander, M. Hänninen, 2016, bioRxiv.

Monomorphic genotypes within a generalist lineage of

Eduardo N. Taboada, J. Corander, G. Caporale, 2016 .

A Genome-Wide Association Study to Identify Diagnostic Markers for Human Pathogenic Campylobacter jejuni Strains

Eduardo N. Taboada, V. Gannon, Peter Kruczkiewicz, 2017, Front. Microbiol..

SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli

Eduardo N. Taboada, Chad R. Laing, M. Whiteside, 2016, BMC Microbiology.

Current methods for molecular typing of Campylobacter species.

C. Carrillo, C. Clark, E. Taboada, 2013, Journal of microbiological methods.

Integrating Whole-Genome Sequencing Data Into Quantitative Risk Assessment of Foodborne Antimicrobial Resistance: A Review of Opportunities and Challenges

Eduardo N. Taboada, Ben A. Smith, E. J. Parmley, 2019, Front. Microbiol..

Source attribution of human campylobacteriosis at the point of exposure by combining comparative exposure assessment and subtype comparison based on comparative genomic fingerprinting

S. Mutschall, E. Taboada, K. Pintar, 2017, PloS one.

“These Aren’t the Strains You’re Looking for”: Recovery Bias of Common Campylobacter jejuni Subtypes in Mixed Cultures

Eduardo N. Taboada, V. Gannon, C. Carrillo, 2020, Frontiers in Microbiology.

Frequent Implication of Multistress-Tolerant Campylobacter jejuni in Human Infections

L. McMullen, L. Chui, V. Li, 2018, Emerging infectious diseases.

Comparison of Molecular Typing Methods Useful for Detecting Clusters of Campylobacter jejuni and C. coli Isolates through Routine Surveillance

Eduardo N. Taboada, L. Ng, C. Clark, 2011, Journal of Clinical Microbiology.

Evaluation of real-time PCR assays and standard curve optimisation for enhanced accuracy in quantification of Campylobacter environmental water isolates.

Eduardo N. Taboada, E. Taboada, R. Guy, 2016, Journal of microbiological methods.

Title 1 SNVPhyl : A Single Nucleotide Variant Phylogenomics pipeline for microbial genomic epidemiology 2 Authors 3

G. Domselaar, C. Nadon, F. Brinkman, 2016 .

Genomics-Based Molecular Epidemiology of Campylobacter jejuni Isolates from Feedlot Cattle and from People in Alberta, Canada

M. Russell, L. Babiuk, A. Potter, 2008, Journal of Clinical Microbiology.

Generalizability and comparability of prevalence estimates in the wild bird literature: methodological and epidemiological considerations

D. Pearl, E. Taboada, Nadine A. Vogt, 2020, Animal Health Research Reviews.

Epidemiology of Campylobacter, Salmonella and antimicrobial resistant Escherichia coli in free‐living Canada geese (Branta canadensis) from three sources in southern Ontario

Eduardo N. Taboada, D. Pearl, S. Mutschall, 2018, Zoonoses and public health.

A strain comparison of Campylobacter isolated from retail poultry and human clinical cases in Atlantic Canada

D. Haldane, C. Carrillo, S. Mutschall, 2019, PloS one.

Combining analytical epidemiology and genomic surveillance to identify risk factors associated with the spread of antimicrobial resistance in Salmonella enterica subsp. enterica serovar Heidelberg

Eduardo N. Taboada, John H. E. Nash, E. J. Parmley, 2022, Microbial genomics.

Molecular Epidemiological Evidence Implicates Cattle as a Primary Reservoir of Campylobacter jejuni Infecting People via Contaminated Chickens

Eduardo N. Taboada, E. Taboada, Valerie F. Boras, 2022, Pathogens.

Epidemiology of Campylobacter jejuni in raccoons (Procyon lotor) on swine farms and in conservation areas in southern Ontario

Eduardo N. Taboada, D. Pearl, S. Mutschall, 2020, Zoonoses and public health.

Extensive characterization of Campylobacter jejuni chicken isolates to uncover genes involved in the ability to compete for gut colonization

E. Taboada, S. Laurent-Lewandowski, S. Quessy, 2015, BMC Microbiology.

SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology

Robert G. Beiko, Morag Graham, Gary Van Domselaar, 2016, bioRxiv.

Comprehensive assessment of the quality of Salmonella whole genome sequence data available in public sequence databases using the Salmonella in silico Typing Resource (SISTR)

Eduardo N. Taboada, Celine Nadon, John H. E. Nash, 2018, Microbial genomics.

SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli

M. Whiteside, V. Gannon, Peter Kruczkiewicz, 2016, BMC Microbiology.

Efficacy of wastewater treatment on Arcobacter butzleri density and strain diversity.

E. Taboada, Valerie F. Boras, L. Selinger, 2016, Water research.

Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population

Matthew Walker, Eduardo N. Taboada, Aaron Petkau, 2016, BMC Genomics.

Studying bacterial genome dynamics using microarray-based comparative genomic hybridization.

Eduardo N. Taboada, C. Luebbert, E. Taboada, 2007, Methods in molecular biology.

Comparative Genomic Hybridization: insights from an empirical

C. Luebbert, E. Taboada, J. Nash, 2005 .

Large-Scale Comparative Genomics Meta-Analysis of Campylobacter jejuni Isolates Reveals Low Level of Genome Plasticity

Eduardo N. Taboada, C. Carrillo, E. Taboada, 2004, Journal of Clinical Microbiology.

Comparative genomic analysis of Campylobacter jejuni associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity

Eduardo N. Taboada, H. Endtz, A. van Belkum, 2007, BMC Genomics.

Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni

Eduardo N. Taboada, V. Gannon, C. Luebbert, 2008, BMC Evolutionary Biology.

Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations

Eduardo N. Taboada, K. Yahara, X. Didelot, 2017, Molecular ecology.

Genome-wide identification of geographical segregated genetic markers in Salmonella enterica serovar Typhimurium variant 4,[5],12:i:-

E. Taboada, G. Manfreda, Mickael Silva, 2018, Scientific Reports.

Genome evolution in major Escherichia coli O157:H7 lineages

Eduardo N. Taboada, Chad Laing, Chad R. Laing, 2007, BMC Genomics.

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

Yongxiang Zhang, Eduardo N. Taboada, Victor P. J. Gannon, 2010, BMC Bioinformatics.

Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access

João A. Carriço, Gary Van Domselaar, Eduardo N. Taboada, 2017, Front. Microbiol..

Development of a comparative genomic fingerprinting assay for rapid and high resolution genotyping of Arcobacter butzleri

Peter Kruczkiewicz, E. Taboada, L. Selinger, 2015, BMC Microbiology.

Clinically Relevant Campylobacter jejuni Subtypes Are Readily Found and Transmitted within the Cattle Production Continuum but Present a Limited Foodborne Risk

E. Taboada, J. Gusse, G. Inglis, 2019, Applied and Environmental Microbiology.

Genomic Regions Conserved in Lineage II Escherichia coli O157:H7 Strains

Chad R. Laing, A. Benson, V. Gannon, 2009, Applied and Environmental Microbiology.

Epidemiology, Relative Invasive Ability, Molecular Characterization, and Competitive Performance of Campylobacter jejuni Strains in the Chicken Gut

Eduardo N. Taboada, E. Taboada, G. Tannock, 2007, Applied and Environmental Microbiology.

Transcriptional and translational expression patterns associated with immobilized growth of Campylobacter jejuni.

Eduardo N. Taboada, L. Babiuk, A. Potter, 2006, Microbiology.

Comparative Variation within the Genome of Campylobacter jejuni NCTC 11168 in Human and Murine Hosts

Eduardo N. Taboada, E. Taboada, R. Uwiera, 2014, PloS one.

Comparative Detection and Quantification of Arcobacter butzleri in Stools from Diarrheic and Nondiarrheic People in Southwestern Alberta, Canada

Peter Kruczkiewicz, E. Taboada, Valerie F. Boras, 2016, Journal of Clinical Microbiology.

Clinical Metagenomics Is Increasingly Accurate and Affordable to Detect Enteric Bacterial Pathogens in Stool

Eduardo N. Taboada, M. Graham, N. Knox, 2022, Microorganisms.

Development and Validation of a Comparative Genomic Fingerprinting Method for High-Resolution Genotyping of Campylobacter jejuni

Eduardo N. Taboada, V. Gannon, C. Jokinen, 2011, Journal of Clinical Microbiology.

The occurrence and sources of Campylobacter spp., Salmonella enterica and Escherichia coli O157:H7 in the Salmon River, British Columbia, Canada.

Eduardo N. Taboada, E. Topp, T. Edge, 2010, Journal of water and health.

Analysis of Campylobacter jejuni Subtype Distribution in the Chicken Broiler Production Continuum: a Longitudinal Examination To Identify Primary Contamination Points

E. Taboada, Valerie F. Boras, R. Uwiera, 2020, Applied and Environmental Microbiology.

Cluster Analysis of Campylobacter jejuni Genotypes Isolated from Small and Medium‐Sized Mammalian Wildlife and Bovine Livestock from Ontario Farms

Eduardo N. Taboada, E. J. Parmley, D. Pearl, 2017, Zoonoses and public health.

Comparative genomic fingerprinting of Campylobacter: application in routine public health surveillance and epidemiological investigations

Eduardo N. Taboada, D. Haldane, S. Mutschall, 2016, Epidemiology and Infection.

In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence

Eduardo N. Taboada, Chad R. Laing, V. Gannon, 2009, BMC Genomics.

Rates of fluoroquinolone resistance in domestically acquired Campylobacter jejuni are increasing in people living within a model study location in Canada.

Eduardo N. Taboada, E. Taboada, Valerie F. Boras, 2020, Canadian journal of microbiology.

Tetracycline Resistant Campylobacter jejuni Subtypes Emanating from Beef Cattle Administered Non-Therapeutic Chlortetracycline are Longitudinally Transmitted within the Production Continuum but are Not Detected in Ground Beef

Eduardo N. Taboada, E. Taboada, J. Gusse, 2019, Microorganisms.

Subtyping of a Large Collection of Historical Listeria monocytogenes Strains from Ontario, Canada, by an Improved Multilocus Variable-Number Tandem-Repeat Analysis (MLVA)

Eduardo N. Taboada, C. Nadon, V. Allen, 2013, Applied and Environmental Microbiology.

Prevalence and diversity of waterborne Arcobacter butzleri in southwestern Alberta, Canada.

E. Taboada, Valerie F. Boras, L. Selinger, 2017, Canadian journal of microbiology.

Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections

Eduardo N. Taboada, E. Taboada, M. Rossi, 2017, Journal of Clinical Microbiology.

Rapid and accurate SNP genotyping of clonal bacterial pathogens with BioHansel

James Robertson, Gary Van Domselaar, Eduardo N. Taboada, 2020, bioRxiv.

Salmonella, Campylobacter, Clostridium difficile, and anti‐microbial resistant Escherichia coli in the faeces of sympatric meso‐mammals in southern Ontario, Canada

Eduardo N. Taboada, E. J. Parmley, J. Weese, 2019, Zoonoses and public health.

Subtype-Specific Selection for Resistance to Fluoroquinolones but Not to Tetracyclines Is Evident in Campylobacter jejuni Isolates from Beef Cattle in Confined Feeding Operations in Southern Alberta, Canada

E. Taboada, L. Selinger, A. L. Webb, 2018, Applied and Environmental Microbiology.

Spatial and temporal drivers of zoonotic pathogen contamination of an agricultural watershed.

Eduardo N. Taboada, Chad R. Laing, E. Topp, 2012, Journal of environmental quality.

MMMVI: Detecting SARS-CoV-2 Variants of Concern in Metagenomic Wastewater Samples

E. Taboada, Dillon O. R. Barker, C. Buchanan, 2021, bioRxiv.

Systematic Evaluation of Whole-Genome Sequencing Based Prediction of Antimicrobial Resistance in Campylobacter jejuni and C. coli

C. Carrillo, S. Mutschall, E. Taboada, 2021, Frontiers in Microbiology.

Therapeutic administration of enrofloxacin in mice does not select for fluoroquinolone resistance in Campylobacter jejuni.

E. Taboada, R. Uwiera, L. Selinger, 2018, Canadian journal of microbiology.

The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory

Matthew Walker, Eduardo N. Taboada, Celine Nadon, 2017, Front. Microbiol..

Genotypic Characterization and Prevalence of Virulence Factors among Canadian Escherichia coli O157:H7 Strains

A. Benson, V. Gannon, E. Taboada, 2008, Applied and Environmental Microbiology.

The Integrated Rapid Infectious Disease Analysis (IRIDA) Platform

Cedric Chauve, Geoffrey L. Winsor, Fiona S. L. Brinkman, 2018, bioRxiv.

Genome-wide Expression Analyses of Campylobacter jejuni NCTC11168 Reveals Coordinate Regulation of Motility and Virulence by flhA*[boxs]

Eduardo N. Taboada, C. Szymanski, L. Babiuk, 2004, Journal of Biological Chemistry.

Rapid Identification of Stable Clusters in Bacterial Populations Using the Adjusted Wallace Coefficient

Eduardo N. Taboada, João André Carriço, Peter Kruczkiewicz, 2018, bioRxiv.

Evaluation of MALDI-TOF mass spectroscopy methods for determination of Escherichia coli pathotypes.

Eduardo N. Taboada, M. Gilmour, P. V. Van Caeseele, 2013, Journal of microbiological methods.

Epidemiology of antimicrobial resistant Campylobacter spp. isolated from retail meats in Canada.

Eduardo N. Taboada, S. Mutschall, E. Taboada, 2017, International journal of food microbiology.

Molecular subtypes of Campylobacter spp., Salmonella enterica, and Escherichia coli O157:H7 isolated from faecal and surface water samples in the Oldman River watershed, Alberta, Canada.

Eduardo N. Taboada, Chad R. Laing, E. Topp, 2011, Water research.