S. Koohi

发表

WalkIm: Compact image-based encoding for high-performance classification of biological sequences using simple tuning-free CNNs

Saeedeh Akbari Rokn Abadi, Amirhossein Mohammadi, S. Koohi, 2022, PloS one.

DNA Sequence Alignment by Window based Optical Correlator

S. Koohi, Z. Kavehvash, H. Babashah, 2017, 1710.01262.

An accurate alignment-free protein sequence comparator based on physicochemical properties of amino acids

Saeedeh Akbari Rokn Abadi, S. Koohi, Azam Sadat Abdosalehi, 2022, Scientific Reports.

Translation-invariant optical neural network for image classification

S. Koohi, Hoda Sadeghzadeh, 2022, Scientific Reports.

All-Optical Recurrent Neural Network With Reconfigurable Activation Function

S. Koohi, Aida Ebrahimi Dehghanpour, 2023, IEEE Journal of Selected Topics in Quantum Electronics.

All-optical DNA variant discovery utilizing extended DV-curve-based wavelength modulation.

Somayyeh Koohi, Ehsan Maleki, Zahra Kavehvash, 2018, Journal of the Optical Society of America. A, Optics, image science, and vision.

High Speed All-optical extended DV-Curve-based DNA sequence alignment utilizing wavelength and polarization modulation

Somayyeh Koohi, Ehsan Maleki, Zahra Kavehvash, 2017, 1801.00030.

High-speed all-optical DNA local sequence alignment based on a three-dimensional artificial neural network.

Somayyeh Koohi, Ehsan Maleki, Zahra Kavehvash, 2017, Journal of the Optical Society of America. A, Optics, image science, and vision.

An automated ultra-fast, memory-efficient, and accurate method for viral genome classification

Saeedeh Akbari Rokn Abadi, Amirhossein Mohammadi, S. Koohi, 2023, J. Biomed. Informatics.

GPH: A group-based partitioning scheme for reducing total power consumption of parallel buses

Mehdi Kamal, Shaahin Hessabi, Somayyeh Koohi, 2011, Microprocess. Microsystems.

HFOSL: hyper scale fast optical switch-based data center network with L-level sub-network

N. Calabretta, S. Koohi, E. Khani, 2022, Telecommun. Syst..

Fully contention-free optical NoC based on wavelenght routing

S. Hessabi, Hoda Aghaei Khouzani, H. A. Khouzani, 2012, The 16th CSI International Symposium on Computer Architecture and Digital Systems (CADS 2012).

Free-Space Optical Neural Network Based on Optical Nonlinearity and Pooling Operations

Somayyeh Koohi, Hoda Sadeghzadeh, Ali Fele Paranj, 2021, IEEE Access.

Flat Ball: Dynamic topology for energy management of optical interconnection networks in data centers

S. Koohi, N. Rezaei, 2023, Opt. Switch. Netw..

Scalable architecture for a contention-free optical network on-chip

Shaahin Hessabi, Somayyeh Koohi, S. Koohi, 2012, J. Parallel Distributed Comput..

Hierarchical on-Chip Routing of Optical Packets in Large Scale MPSoCs

Shaahin Hessabi, Somayyeh Koohi, S. Koohi, 2010, 2010 18th Euromicro Conference on Parallel, Distributed and Network-based Processing.

Contention-free on-chip routing of optical packets

Shaahin Hessabi, Somayyeh Koohi, S. Koohi, 2009, 2009 3rd ACM/IEEE International Symposium on Networks-on-Chip.

Hierarchical opto-electrical on-chip network for future multiprocessor architectures

Shaahin Hessabi, Somayyeh Koohi, S. Koohi, 2011, J. Syst. Archit..

Speeding up DNA sequence alignment by optical correlator

Fereshte Mozafari, Somayyeh Koohi, Zahra Kavehvash, 2018, Optics & Laser Technology.

Temporal analog optical computing using an on-chip fully reconfigurable photonic signal processor

Somayyeh Koohi, Zahra Kavehvash, Hossein Babashah, 2017, Optics & Laser Technology.

Integration in analog optical computing using metasurfaces revisited: toward ideal optical integration

Somayyeh Koohi, Zahra Kavehvash, Hossein Babashah, 2017 .

CapsNet-MHC predicts peptide-MHC class I binding based on capsule neural networks

S. Koohi, Mahmood Kalemati, Saeid Darvishi, 2023, Communications biology.

A thermally-resilient all-optical network-on-chip

Shaahin Hessabi, Somayyeh Koohi, Melika Tinati, 2019, Microelectronics Reliability.

Low-overhead thermally resilient optical network-on-chip architecture

Shaahin Hessabi, Somayyeh Koohi, Melika Tinati, 2019, Nano Commun. Networks.

OptCAM: An ultra‐fast all‐optical architecture for DNA variant discovery

Zahra Kavehvash, Alireza Mashaghi, Somayyeh Koohi, 2019, Journal of biophotonics.

BiComp-DTA: Drug-target binding affinity prediction through complementary biological-related and compression-based featurization approach

S. Koohi, Mahmood Kalemati, Mojtaba Zamani Emani, 2023, PLoS Comput. Biol..

A new profiling approach for DNA sequences based on the nucleotides' physicochemical features for accurate analysis of SARS-CoV-2 genomes

Saeedeh Akbari Rokn Abadi, Amirhossein Mohammadi, S. Koohi, 2023, BMC Genomics.

An optimized graph-based structure for single-cell RNA-seq cell-type classification based on non-linear dimension reduction

Saeedeh Akbari Rokn Abadi, S. Koohi, Seyed Pouria Laghaee, 2023, BMC Genomics.

HELIOS: High-speed sequence alignment in optics

Saeedeh Akbari Rokn Abadi, S. Koohi, E. Maleki, 2022, PLoS Comput. Biol..

All-optical wavelength-routed NoC based on a novel hierarchical topology

Shaahin Hessabi, Meisam Abdollahi, Somayyeh Koohi, 2011, Proceedings of the Fifth ACM/IEEE International Symposium.

Free-Space Optical Spiking Neural Network

S. Koohi, Reyhane Ahmadi, Amirreza Ahmadnejad, 2023, ArXiv.

KDeep: a new memory-efficient data extraction method for accurately predicting DNA/RNA transcription factor binding sites

Saeedeh Akbari Rokn Abadi, S. Koohi, SeyedehFatemeh Tabatabaei, 2023, Journal of Translational Medicine.