S. Williamson

发表

The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families

Benjamin J. Raphael, Susan S. Taylor, David A W Soergel, 2007, PLoS biology.

Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment.

E. Allen, D. Fadrosh, S. Williamson, 2011, Environmental microbiology reports.

The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific

A. Halpern, G. Sutton, S. Kravitz, 2007, PLoS biology.

The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

A. Halpern, G. Sutton, M. Frazier, 2008, PloS one.

A Metagenomic Framework for the Study of Airborne Microbial Communities

Shibu Yooseph, Mark D. Adams, Daniel Brami, 2013, PloS one.

Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

K. Eric Wommack, Shawn W. Polson, Ian R. McDonald, 2012, PloS one.

Lawrence Berkeley National Laboratory Title The Sorcerer II Global Ocean Sampling Expedition : Expanding the Universe of Protein Families Permalink

Benjamin J. Raphael, Susan S. Taylor, David A W Soergel, 2007 .

Single Virus Genomics: A New Tool for Virus Discovery

Lisa Zeigler Allen, Thomas Ishoey, Roger S. Lasken, 2011, PloS one.

TheViral MetaGenome Annotation Pipeline(VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data

J. Inman, Leonid Kagan, Sean Murphy, 2011, Standards in genomic sciences.

Viral photosynthetic reaction center genes and transcripts in the marine environment

Shibu Yooseph, Yael Mandel-Gutfreund, Michael Shmoish, 2007, The ISME Journal.

Going Deeper: Metagenome of a Hadopelagic Microbial Community

S. Yooseph, E. Allen, D. Fadrosh, 2011, PloS one.

From bacterial to microbial ecosystems (metagenomics).

Shibu Yooseph, S. Yooseph, S. Williamson, 2012, Methods in molecular biology.

Genomic and functional adaptation in surface ocean planktonic prokaryotes

Shibu Yooseph, Andrey Tovchigrechko, Kenneth H. Nealson, 2010, Nature.

Environmental Factors that influence the Transition from Lysogenic to Lytic Existence in the ϕHSIC/Listonella pelagia Marine Phage–Host System

J. Paul, S. Williamson, John H. Paul, 2006, Microbial Ecology.

Nutrient stimulation of lytic phage production in bacterial populations of the Gulf of Mexico

J. Paul, S. Williamson, SJ Williamson, 2004 .

Seasonal Variation in Lysogeny as Depicted by Prophage Induction in Tampa Bay, Florida

L. Mcdaniel, J. Paul, S. Williamson, 2002, Applied and Environmental Microbiology.

Plankton blooms: Lysogeny in marine Synechococcus

L. Mcdaniel, J. Paul, S. Williamson, 2002, Nature.

Repeating patterns of virioplankton production within an estuarine ecosystem

Danielle M. Winget, Kurt E. Williamson, S. Bench, 2011, Proceedings of the National Academy of Sciences.

Metagenomic Exploration of Viruses throughout the Indian Ocean

Shibu Yooseph, Andrey Tovchigrechko, Lisa Zeigler Allen, 2012, PloS one.

Lysogenic virus–host interactions predominate at deep-sea diffuse-flow hydrothermal vents

Danielle M. Winget, Kurt E. Williamson, S. Bench, 2008, The ISME Journal.

Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses

Daniel J. Nasko, Shawn W. Polson, S. Williamson, 2014, Proceedings of the National Academy of Sciences.

Shotgun metagenomics indicates novel family A DNA polymerases predominate within marine virioplankton

Shawn W. Polson, S. Williamson, Eric G Sakowski, 2013, The ISME Journal.

Complete Genome Sequence of φHSIC, a Pseudotemperate Marine Phage of Listonella pelagia

F. Rohwer, J. Paul, A. Segall, 2005, Applied and Environmental Microbiology.

Optimizing the indirect extraction of prokaryotic DNA from soils

Shawn W. Polson, Kurt E. Williamson, S. Williamson, 2011 .

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

J. Venter, J. Badger, I. Paulsen, 2012, The ISME Journal.

Hydroxyapatite-Mediated Separation of Double-Stranded DNA, Single-Stranded DNA, and RNA Genomes from Natural Viral Assemblages

C. Andrews-Pfannkoch, D. Fadrosh, S. Williamson, 2010, Applied and Environmental Microbiology.

Diffuse flow environments within basalt- and sediment-based hydrothermal vent ecosystems harbor specialized microbial communities

Shawn W. Polson, B. Campbell, Charles K. Lee, 2013, Front. Microbiol..

Interaction of the ΦHSIC Virus with Its Host: Lysogeny or Pseudolysogeny?

J. Paul, S. Williamson, M. Mclaughlin, 2001, Applied and Environmental Microbiology.

Metagenomic investigation of microbes and viruses in patients with jaw osteonecrosis associated with bisphosphonate therapy.

S. Yooseph, M. Thiagarajan, D. Fadrosh, 2012, Oral surgery, oral medicine, oral pathology and oral radiology.

Going Deeper: Metagenome of a Hadopelagic Microbial Community

S. Yooseph, F. Rodríguez-Valera, E. Allen, 2011, PloS one.

Isolation and genome analysis of single virions using 'single virus genomics'.

S. Williamson, J. McLean, M. Novotny, 2013, Journal of visualized experiments : JoVE.

Separation of single-stranded DNA, double-stranded DNA and RNA from an environmental viral community using hydroxyapatite chromatography.

C. Andrews-Pfannkoch, D. Fadrosh, S. Williamson, 2011, Journal of visualized experiments : JoVE.

Instruments and Methods An instrument for collecting discrete large-volume water samples suitable for ecological studies of microorganisms

S. Cary, B. Glazer, S. Williamson, 2004 .