A. Sarah Walker

TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

D. Crook, A. Sheppard, N. Stoesser, 2018, bioRxiv.

Microbial Translocation Does Not Drive Immune Activation in Ugandan Children Infected With HIV

N. Klein, F. Fitzgerald, A. Sarah Walker, 2019 .

Instrumental variables and interactions in the causal analysis of a complex clinical trial

I. White, A. Sarah Walker, S. Bond, 2007, Statistics in medicine.

Optimising design of research to evaluate antibiotic stewardship interventions; consensus recommendations of a multinational working group.

J. Timsit, M. Bonten, M. Hulscher, 2020, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Penicillin Binding Protein Substitutions Co-occur with Fluoroquinolone Resistance in ‘Epidemic’ Lineages of Multi Drug-Resistant Clostridioides difficile

X. Didelot, D. Crook, K. Jolley, 2022, bioRxiv.

Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli

T. Peto, D. Crook, K. Hopkins, 2021, bioRxiv.

Inferring risks of coronavirus transmission from community household data

Thomas House, Lorenzo Pellis, Koen B. Pouwels, 2021, Statistical methods in medical research.

Flanker: a tool for comparative genomics of gene flanking regions

T. Peto, D. Crook, B. Constantinides, 2021, bioRxiv.

Symptoms and Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Positivity in the General Population in the United Kingdom

K. Lythgoe, D. Bonsall, T. House, 2021, Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America.

A data compendium of Mycobacterium tuberculosis antibiotic resistance

Daniel J. Wilson, G. Rodger, Z. Iqbal, 2021, bioRxiv.

MinION Nanopore Sequencing of Multiple Displacement Amplified Mycobacteria DNA Direct from Sputum

T. Peto, D. Crook, L. Pankhurst, 2018, bioRxiv.

Microbial Translocation Does Not Drive Immune Activation in Ugandan Children Infected With HIV

F. Fitzgerald, A. Sarah Walker, V. Mulenga, 2018, The Journal of infectious diseases.

Carbapenem-resistant Enterobacteriaceae dispersal from sinks is linked to drain position and drainage rates in a laboratory model system.

N. Verlander, A. Bennett, H. Phan, 2019, The Journal of hospital infection.