D. Alexeev

发表

IBD risk loci are enriched in multigenic regulatory modules encompassing putative causative genes

David C. Wilson, Judy H. Cho, C. Gieger, 2018, Nature Communications.

Co-occurrence patterns of bacteria within microbiome of Moscow subway

C. Mason, Ebrahim Afshinnekoo, D. Alexeev, 2020, Computational and structural biotechnology journal.

Development of qPCR platform with probes for quantifying prevalent and biomedically relevant human gut microbial taxa

Alexander V. Tyakht, M. Filipenko, D. Alexeev, 2020, Molecular and Cellular Probes.

Proteome analysis of chloroplasts from the moss Physcomitrella patens (Hedw.) B.S.G.

V. S. Kazakov, V. Govorun, D. Alexeev, 2010, Biochemistry (Moscow).

Specific pools of endogenous peptides are present in gametophore, protonema, and protoplast cells of the moss Physcomitrella patens

V. Govorun, I. Altukhov, D. Alexeev, 2015, BMC Plant Biology.

Genome analysis of E. coli isolated from Crohn’s disease patients

D. N. Andreev, M. Gelfand, V. Govorun, 2017, BMC Genomics.

Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn’s disease discovered using metagenomic and genomic analyses

Alexander V. Tyakht, V. Govorun, D. Alexeev, 2018, BMC Genomics.

Comprehensive analysis of the venom gland transcriptome of the spider Dolomedes fimbriatus

E. Grishin, V. Govorun, D. Alexeev, 2014, Scientific data.

Serum proteome profiling for diagnostics of ovarian cancer using ClinProt magnetic technique and MALDI-TOF mass spectrometry

V. Govorun, S. Moshkovskii, D. Alexeev, 2008 .

Proteome analysis of the Mycobacterium tuberculosis Beijing B0/W148 cluster

V. Govorun, I. Altukhov, D. Alexeev, 2016, Scientific Reports.

Application of Spiroplasma melliferum proteogenomic profiling for the discovery of virulence factors and pathogenicity mechanisms in host-associated spiroplasmas.

Alexander V. Tyakht, A. Aliper, V. Govorun, 2012, Journal of proteome research.

Dissection of affinity captured LINE-1 macromolecular complexes

B. Chait, J. Boeke, D. Fenyö, 2018, eLife.

DNA repair in Mycoplasma gallisepticum

V. Govorun, D. Alexeev, G. Fisunov, 2013, BMC Genomics.

Guidelines to Statistical Analysis of Microbial Composition Data Inferred from Metagenomic Sequencing.

D. Alexeev, A. Tyakht, V. Odintsova, 2017, Current issues in molecular biology.

Gut Microbiota and Aging

D. Alexeev, A. Popenko, D. Kashtanova, 2019, Healthy Ageing and Longevity.

Yogurt fortified with vitamins and probiotics impacts the frequency of upper respiratory tract infections but not gut microbiome: A multicenter double-blind placebo controlled randomized study

Alexander V. Tyakht, D. Alexeev, A. Tyakht, 2021 .

Modulation of helicobacter pylori transcriptional profile by subinhibitory concentrations of rifampicin

J. François, V. Govorun, D. Alexeev, 2013 .

Draft Genome of the Nitrogen-Fixing Bacterium Pseudomonas stutzeri Strain KOS6 Isolated from Industrial Hydrocarbon Sludge

V. Govorun, D. Alexeev, R. Müller, 2013, Genome Announcements.

Variation in Copy Number of Ty3/Gypsy Centromeric Retrotransposons in the Genomes of Thinopyrum intermedium and Its Diploid Progenitors

D. Alexeev, A. Kiseleva, I. Kirov, 2016, PloS one.

Modified nucleotides m2G966/m5C967 of Escherichia coli 16S rRNA are required for attenuation of tryptophan operon

P. Sergiev, O. Dontsova, A. Bogdanov, 2013, Scientific Reports.

No Evidence of a Common DNA Variant Profile Specific to World Class Endurance Athletes

Nir Eynon, Guan Wang, Dmitry G. Alexeev, 2016, PloS one.

Transcriptome analysis reveals novel regulatory mechanisms in a genome-reduced bacterium

V. Govorun, I. Altukhov, D. Alexeev, 2014, Nucleic acids research.

Mycoplasma stress response: adaptive regulation or broken brakes?

V. Govorun, I. Altukhov, D. Alexeev, 2014, bioRxiv.

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease

Dmitry S. Ischenko, Dmitry G. Alexeev, Elena S. Kostryukova, 2017, Microbiome.

MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data

Dmitry G. Alexeev, Vladimir Ulyantsev, Alexander V. Tyakht, 2016, Bioinform..

Gut Microbiota in Patients with Different Metabolic Statuses: Moscow Study

D. Alexeev, A. Tyakht, A. Popenko, 2018, Microorganisms.

Proteome–Metabolome Profiling of Ovarian Cancer Ascites Reveals Novel Components Involved in Intercellular Communication*

V. Govorun, I. Altukhov, D. Alexeev, 2014, Molecular & Cellular Proteomics.

Gut microbiota and diet in patients with different glucose tolerance

Alexander V. Tyakht, S. Boytsov, N. Karamnova, 2015, Endocrine connections.

AGTR2 and sprint/power performance: a case-control replication study for rs11091046 polymorphism in two ethnicities

Elena A. Ospanova, E. Miyamoto-Mikami, P. Żmijewski, 2017, Biology of sport.

Abundance profiling of specific gene groups using precomputed gut metagenomes yields novel biological hypotheses

Alexander V. Tyakht, D. Alexeev, A. Tyakht, 2017, PloS one.

Gut microbiome signature of Viliuisk encephalomyelitis in Yakuts includes an increase in microbes linked to lean body mass and eating behaviour

D. Alexeev, A. Tyakht, E. Kostryukova, 2020, Orphanet Journal of Rare Diseases.

Microbiome Responses to an Uncontrolled Short-Term Diet Intervention in the Frame of the Citizen Science Project

Alexander V. Tyakht, A. Kurilshikov, A. Baranova, 2018, Nutrients.

Rural and urban microbiota

V. Govorun, D. Alexeev, A. Tyakht, 2014, Gut microbes.

Human gut microbiota community structures in urban and rural populations in Russia

Dmitry G. Alexeev, Elena S. Kostryukova, Alexander V. Tyakht, 2013, Nature Communications.

Methods for The Metagenomic Data Visualization and Analysis.

Dmitry Alexeev, Konstantin Sudarikov, Alexander Tyakht, 2017, Current issues in molecular biology.

Chapter from : Metagenomics Current Advances and Emerging Concepts

D. Alexeev, A. Tyakht, K. Sudarikov, 2017 .

ResistoMap—online visualization of human gut microbiota antibiotic resistome

Dmitry G. Alexeev, Alexander V. Tyakht, Konstantin S. Yarygin, 2017, Bioinform..

ResistoMap — online visualization of human gut microbiota antibiotic resistome

D. Alexeev, A. Tyakht, B. Kovarsky, 2016, bioRxiv.

Agent Based Modeling of Human Gut Microbiome Interactions and Perturbations

Kirill Peskov, Alexander V. Tyakht, Vadim Govorun, 2016, PloS one.

RNA-Seq gene expression profiling of HepG2 cells: the influence of experimental factors and comparison with liver tissue

A. Archakov, V. Govorun, D. Alexeev, 2014, BMC Genomics.

Chromosome 18 transcriptoproteome of liver tissue and HepG2 cells and targeted proteome mapping in depleted plasma: update 2013.

Alexander V. Tyakht, Nadezhda A. Bogolubova, A. Lisitsa, 2014, Journal of proteome research.

DNA repair in Mycoplasma gallisepticum

V. Govorun, D. Alexeev, G. Fisunov, 2013, BMC Genomics.

Bacterial rose garden for metagenomic SNP-based phylogeny visualization

Dmitry G. Alexeev, Vadim Govorun, Alexander V. Tyakht, 2015, BioData Mining.

Core Proteome of the Minimal Cell: Comparative Proteomics of Three Mollicute Species

V. Govorun, I. Demina, D. Alexeev, 2011, PloS one.

Complete Genome and Proteome of Acholeplasma laidlawii

M. Gelfand, M. Kazanov, V. Govorun, 2011, Journal of bacteriology.

The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report

Emmanuel Dias-Neto, Joel Dudley, Mark Hernandez, 2016, Microbiome.

Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis

Dmitry S. Ischenko, Dmitry G. Alexeev, Vladimir Ulyantsev, 2016, BMC Bioinformatics.

Unusual Large-Scale Chromosomal Rearrangements in Mycobacterium tuberculosis Beijing B0/W148 Cluster Isolates

V. Govorun, D. Alexeev, E. Ilina, 2014, PloS one.

Functional divergence of Helicobacter pylori related to early gastric cancer.

Vladimir A Ivanisenko, Vadim M Govorun, Dmitry Alexeev, 2010, Journal of proteome research.

RNA-Seq gene expression profiling of HepG2 cells: the influence of experimental factors and comparison with liver tissue

Alexander V. Tyakht, A. Archakov, V. Govorun, 2014, BMC Genomics.

Purification and characterisation of recombinant Bacteroides fragilis toxin-2.

V. Govorun, I. Altukhov, D. Alexeev, 2013, Biochimie.

Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge

Alexander S. Mikheyev, Jennifer H. Wisecaver, A. Kondrashov, 2014, Nature Communications.

Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis

D. Alexeev, A. Tyakht, V. Dubinkina, 2016, BMC Bioinformatics.

New method for peptide desorption from abundant blood proteins for plasma/serum peptidome analyses by mass spectrometry.

V. Govorun, D. Alexeev, V. Ivanov, 2011, Journal of proteomics.

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease

V. Govorun, E. Krupitsky, D. Alexeev, 2017, Microbiome.

Chromosome 18 transcriptome profiling and targeted proteome mapping in depleted plasma, liver tissue and HepG2 cells.

Alexander V. Tyakht, Alexander V Tyakht, Arthur T Kopylov, 2013, Journal of proteome research.

Temporal dynamics of probiotic Lacticaseibacillus casei and rhamnosus abundance in a fermented dairy product evaluated using a combination of cultivation-dependent and -independent methods

D. Alexeev, N. Klimenko, A. Tyakht, 2021 .

Human Gut Microbiome Response Induced by Fermented Dairy Product Intake in Healthy Volunteers

Alexander V. Tyakht, D. Alexeev, A. Tyakht, 2019, Nutrients.

Respiratory Pathways Reconstructed by Multi-Omics Analysis in Melioribacter roseus, Residing in a Deep Thermal Aquifer of the West-Siberian Megabasin

V. Govorun, S. Gavrilov, E. Bonch‐Osmolovskaya, 2017, Front. Microbiol..

Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn’s disease discovered using metagenomic and genomic analyses

V. Govorun, D. Alexeev, Anna Elizarova, 2018, BMC Genomics.

Gut microbiota and vascular biomarkers in patients without clinical cardiovascular diseases

S. Boytsov, D. Alexeev, A. Tyakht, 2017 .

Specific pools of endogenous peptides are present in gametophore, protonema, and protoplast cells of the moss Physcomitrella patens

V. Govorun, I. Altukhov, D. Alexeev, 2015, BMC Plant Biology.

Gut microbiota and diet in patients with various glucose tolerance

S. Boytsov, N. Karamnova, D. Alexeev, 2016 .

Prioritization of causal genes for coronary artery disease based on cumulative evidence from experimental and in silico studies

P. Joshi, James F. Wilson, Y. Aulchenko, 2020, Scientific Reports.

AGTR2 gene polymorphism is associated with muscle fibre composition, athletic status and aerobic performance

P. Żmijewski, Z. Jastrzębski, D. Popov, 2014, Experimental physiology.

Knomics-Biota - a system for exploratory analysis of human gut microbiota data

N. Dovidchenko, I. Altukhov, D. Alexeev, 2018, bioRxiv.

Dissection of purified LINE-1 reveals distinct nuclear and cytoplasmic intermediates

Martin S. Taylor, B. Chait, J. Boeke, 2017, bioRxiv.

MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads

Dmitry G. Alexeev, Elena S. Kostryukova, Ilya A. Altukhov, 2012, Source Code for Biology and Medicine.

[Metagenomic analysis of taxonomic and functional changes in gut microbiota of patients with alcoholic dependence syndrome].

V. Govorun, D. Alexeev, E. Ilina, 2016, Biomeditsinskaia khimiia.

Large scale analysis of amino acid substitutions in bacterial proteomics

Dmitry S. Ischenko, Dmitry G. Alexeev, Egor Shitikov, 2016, BMC Bioinformatics.

Dissection of purified LINE-1 reveals distinct nuclear and cytoplasmic intermediates

Martin S. Taylor, B. Chait, J. Boeke, 2017, bioRxiv.