Joomyeong Kim

发表

Methylation-sensitive binding of transcription factor YY1 to an insulator sequence within the paternally expressed imprinted gene, Peg3.

Anne Bergmann, L. Stubbs, Joomyeong Kim, 2003, Human molecular genetics.

Evolution of B2 repeats: the muroid explosion

P. Deininger, Joomyeong Kim, D. H. Kass, 2005, Genetica.

Evolution of B2 repeats: the muroid explosion

P. Deininger, Joomyeong Kim, D. H. Kass, 2004, Genetica.

Evolutionary Conserved Motif Finder (ECMFinder) for genome-wide identification of clustered YY1- and CTCF-binding sites

Keunsoo Kang, Jae Hoon Chung, J. Chung, 2009, Nucleic acids research.

Human Chromosome 19 and Related Regions in Mouse: Conservative and Lineage-Specific Evolution

Paul Richardson, Paramvir S. Dehal, Miriam Land, 2001, Science.

Circular RNA identified from Peg3 and Igf2r

S. Ghimire, Joomyeong Kim, Bambarendage P. U. Perera, 2018, PloS one.

Oxytocin receptor is regulated by Peg3

K. Nishimori, Joomyeong Kim, R. Teruyama, 2018, PloS one.

Allele-specific enhancer interaction at the Peg3 imprinted domain

L. Stubbs, S. Ghimire, Joomyeong Kim, 2019, PloS one.

Allele and dosage specificity of the Peg3 imprinted domain

Joomyeong Kim, R. Teruyama, Wesley D. Frey, 2018, PLoS ONE.

Transcription-driven DNA methylation setting on the mouse Peg3 locus

Joomyeong Kim, Corey L. Bretz, 2017, Epigenetics.

Inversion of the imprinting control region of the Peg3 domain

Hana Kim, Joomyeong Kim, Hongzhi He, 2017, PloS one.

Parental and sexual conflicts over the Peg3 imprinted domain

Joomyeong Kim, Bambarendage P. U. Perera, Hongzhi He, 2016, Scientific Reports.

Sex and Tissue Specificity of Peg3 Promoters

Joomyeong Kim, Bambarendage P. U. Perera, Bambarendage P U Perera, 2016, PloS one.

Yy1 Gene Dosage Effect and Bi-Allelic Expression of Peg3

Joomyeong Kim, Bambarendage P. U. Perera, R. Teruyama, 2015, PloS one.

Paternally Expressed Peg3 Controls Maternally Expressed Zim1 as a Trans Factor

Joomyeong Kim, Hongzhi He, An Ye, 2014, PloS one.

In vivo YY1 knockdown effects on genomic imprinting.

Jeong Do Kim, Joomyeong Kim, Jeong do Kim, 2008, Human molecular genetics.

APeg3: regulation of Peg3 through an evolutionarily conserved ncRNA.

Joomyeong Kim, Wesley D. Frey, 2014, Gene.

Two evolutionarily conserved sequence elements for Peg3/Usp29 transcription

Jeong Do Kim, Joomyeong Kim, J. Choo, 2008, BMC Molecular Biology.

High-Throughput Targeted Repeat Element Bisulfite Sequencing (HT-TREBS).

Joomyeong Kim, Muhammad B Ekram, A. Bakshi, 2019, Methods in molecular biology.

Recruitment and Biological Consequences of Histone Modiﬁ cation of H3K27me3 and H3K9me3

Hana Kim, Joomyeong Kim, 2013 .

Tissue-Specific Contributions of Paternally Expressed Gene 3 in Lactation and Maternal Care of Mus musculus

Joomyeong Kim, Wesley D. Frey, 2015, PloS one.

LSU Digital Commons LSU Digital Commons Alternative promoters of Peg3 with maternal specificity Alternative promoters of Peg3 with maternal specificity

Joomyeong Kim, Bambarendage P. U. Perera, 2022 .

Multiple YY1 and CTCF binding sites in imprinting control regions

Joomyeong Kim, 2008, Epigenetics.

Retroposition and evolution of the DNA-binding motifs of YY1, YY2 and REX1

Jeong Do Kim, Joomyeong Kim, C. Faulk, 2007, Nucleic acids research.

AEBP 2 as a potential targeting protein for Polycomb Repression Complex PRC 2

Hana Kim, Joomyeong Kim, K. Kang, 2009 .

DNA methylation analysis of the mammalian PEG3 imprinted domain.

Joomyeong Kim, J. M. Huang, 2009, Gene.

YY1 is autoregulated through its own DNA-binding sites

Joomyeong Kim, Sungryul Yu, Jeong do Kim, 2009, BMC Molecular Biology.

Oncogenic potential of yin yang 1 mediated through control of imprinted genes.

Joomyeong Kim, Michelle M. Thiaville, 2011, Critical reviews in oncogenesis.

YY1's DNA-Binding motifs in mammalian olfactory receptor genes

Joomyeong Kim, C. Faulk, 2009, BMC Genomics.

YY1's longer DNA-binding motifs.

Joomyeong Kim, Jeong do Kim, 2009, Genomics.

Identification of clustered YY1 binding sites in imprinting control regions.

I. Ovcharenko, L. Stubbs, Joomyeong Kim, 2006, Genome research.

Recruitment and biological consequences of histone modification of H3K27me3 and H3K9me3.

Hana Kim, Hana Kim, Joomyeong Kim, 2012, ILAR journal.

High-Throughput Targeted Repeat Element Bisulfite Sequencing (HT-TREBS): Genome-Wide DNA Methylation Analysis of IAP LTR Retrotransposon

Joomyeong Kim, Muhammad B Ekram, 2014, PloS one.

Retrotransposons as a major source of epigenetic variations in the mammalian genome

Hana Kim, Joomyeong Kim, Muhammad B Ekram, 2012, Epigenetics.

Intergenic and intronic DNA hypomethylated regions as putative regulators of imprinted domains.

Joomyeong Kim, A. Bakshi, Terri L Cain, 2018, Epigenomics.

Retrotransposon-based profiling of mammalian epigenomes: DNA methylation of IAP LTRs in embryonic stem, somatic and cancer cells.

Joomyeong Kim, A. Bakshi, 2014, Genomics.

YY1 as a controlling factor for the Peg3 and Gnas imprinted domains.

L. Stubbs, Joomyeong Kim, J. Choo, 2007, Genomics.

YY1's role in DNA methylation of Peg3 and Xist

Joomyeong Kim, Jeong do Kim, Keunsoo Kang, 2009, Nucleic acids research.

Rapid evolution of a recently retroposed transcription factor YY2 in mammalian genomes.

L. Stubbs, Xiaochen Lu, Joomyeong Kim, 2006, Genomics.

AEBP2 as a potential targeting protein for Polycomb Repression Complex PRC2

Hana Kim, Joomyeong Kim, Keunsoo Kang, 2009 .

Ablation of Ezh2 in neural crest cells leads to aberrant enteric nervous system development in mice

Hana Kim, Joomyeong Kim, M. Faisal, 2018, PloS one.

Aebp2 as an Epigenetic Regulator for Neural Crest Cells

Tae-Young Roh, Hana Kim, Joomyeong Kim, 2011, PloS one.

Allele-specific deposition of macroH2A1 in imprinting control regions.

L. Stubbs, J. Chung, Joomyeong Kim, 2006, Human molecular genetics.

A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors.

Laurie Gordon, Elbert Branscomb, Shan Yang, 2006, Genome research.

Retrotransposon-Derived Promoter of Mammalian Aebp2

Hana Kim, Joomyeong Kim, A. Bakshi, 2015, PloS one.

Enhancer-driven alternative promoters of imprinted genes

S. Ghimire, Joomyeong Kim, Bambarendage P. U. Perera, 2018, PloS one.

Phylogenetic and Epigenetic Footprinting of the Putative Enhancers of the Peg3 Domain

Joomyeong Kim, An Ye, 2016, PloS one.

DNA methylation variation of human-specific Alu repeats

M. Batzer, Joomyeong Kim, A. Bakshi, 2016, Epigenetics.

Genomic organization of the human leukocyte immunoglobulin-like receptors within the leukocyte receptor complex on Chromosome 19q13.4

L. Ashworth, Joomyeong Kim, J. Arm, 2000, Immunogenetics.

Mus musculus and Mus spretus homologues of the human telomere-associated protein TIN2.

J. Campisi, Joomyeong Kim, S. Parrinello, 2003, Genomics.

Lineage-specific imprinting and evolution of the zinc-finger gene ZIM2.

Anne Bergmann, S. Lucas, L. Stubbs, 2004, Genomics.

Imprinting of an evolutionarily conserved antisense transcript gene APeg3.

Joomyeong Kim, J. Choo, Jeong do Kim, 2008, Gene.

Genomic organization and imprinting of the Peg3 domain in bovine.

L. Stubbs, Joomyeong Kim, A. Bergmann, 2007, Genomics.

DNA-binding motif and target genes of the imprinted transcription factor PEG3.

Tae-Young Roh, Hana Kim, Joomyeong Kim, 2013, Gene.

YY 1 ’ s role in DNA methylation of Peg 3 and Xist

Joomyeong Kim, Jeong do Kim, Keunsoo Kang, 2009 .

Decoding the genome with an integrative analysis tool: Combinatorial CRM Decoder

Daeyoup Lee, J. Chung, Joomyeong Kim, 2011, Nucleic acids research.

Epigenetic instability of imprinted genes in human cancers

Suman Lee, Joomyeong Kim, Corey L. Bretz, 2015, Nucleic acids research.

Epigenetic response of imprinted domains during carcinogenesis

Joomyeong Kim, I. Langohr, Corey L. Bretz, 2017, Clinical Epigenetics.

Ablation of Ezh2 in neural crest cells leads to Hirschsprung's disease-like phenotype in mice

Hana Kim, Joomyeong Kim, M. Faisal, 2018, bioRxiv.

Identification of an Evolutionarily Conserved Cis-Regulatory Element Controlling the Peg3 Imprinted Domain

Hana Kim, Joomyeong Kim, Wesley D. Frey, 2013, PloS one.

Rapidly evolving imprinted loci

L. Stubbs, Joomyeong Kim, 2005 .

MacroH2A1 knockdown effects on the Peg3 imprinted domain

Joomyeong Kim, J. Choo, Jeong do Kim, 2007, BMC Genomics.

Identification of an antisense transcript to ZIM2 in the primate lineage.

Joomyeong Kim, J. M. Huang, Sungryul Yu, 2009, Gene.

Sporadic amplification of ID elements in rodents

P. Deininger, Joomyeong Kim, D. H. Kass, 2004, Journal of Molecular Evolution.

Regulation and Function of the Peg3 Imprinted Domain

Joomyeong Kim, Hongzhi He, 2014, Genomics & informatics.

PEG3 controls lipogenesis through ACLY

S. Ghimire, Joomyeong Kim, 2021, PloS one.

Imprinting control region (ICR) of the Peg3 domain.

Hana Kim, Joomyeong Kim, M. Faisal, 2012, Human molecular genetics.

Peg3 Mutational Effects on Reproduction and Placenta-Specific Gene Families

Hana Kim, Joomyeong Kim, M. Faisal, 2013, PloS one.

Transcriptional Truncation of the Long Coding Imprinted Gene Usp29

Joomyeong Kim, Hongzhi He, An Ye, 2016, PloS one.

Evolution patterns of Peg3 and H19-ICR.

Joomyeong Kim, 2019, Genomics.

YY1’s role in the Peg3 imprinted domain

Joomyeong Kim, Bambarendage P. U. Perera, Hongzhi He, 2017, Scientific Reports.

PEG3 binds to H19-ICR as a transcriptional repressor

Joomyeong Kim, Hongzhi He, An Ye, 2016, Epigenetics.

Transcription factor YY1 is essential for regulation of the Th2 cytokine locus and for Th2 cell differentiation

M. Busslinger, Joomyeong Kim, A. Souabni, 2012, Proceedings of the National Academy of Sciences.

PEG3 control on the mammalian MSL complex

Hana Kim, Joomyeong Kim, An Ye, 2017, PloS one.

NGS-based deep bisulfite sequencing

Suman Lee, Joomyeong Kim, 2015, MethodsX.

Rex1/Zfp42 as an epigenetic regulator for genomic imprinting.

Hana Kim, Joomyeong Kim, C. Faulk, 2011, Human molecular genetics.

DNA-Binding Motif of the Imprinted Transcription Factor PEG3

Suman Lee, Joomyeong Kim, An Ye, 2015, PloS one.

Epigenetic instability at imprinting control regions in a KrasG12D-induced T-cell neoplasm

Suman Lee, Joomyeong Kim, I. Langohr, 2015, Epigenetics.

AEBP2 as a transcriptional activator and its role in cell migration.

Hana Kim, Joomyeong Kim, Muhammad B Ekram, 2015, Genomics.

The gene encoding sepiapterin reductase is located in central mouse Chromosome 6

Young Shik Park, L. Stubbs, J. Chung, 1997, Mammalian Genome.

Imprinting and evolution of two Kruppel-type zinc-finger genes, ZIM3 and ZNF264, located in the PEG3/USP29 imprinted domain.

L. Stubbs, J. Kim, Xiaochen Lu, 2001, Genomics.

Trans-allelic mutational effects at the Peg3 imprinted locus

Joomyeong Kim, Corey L. Bretz, 2018, PloS one.

YY1’s role in the Peg3 imprinted domain

Joomyeong Kim, Bambarendage P. U. Perera, Hongzhi He, 2017, Scientific Reports.

The human homolog of a mouse-imprinted gene, Peg3, maps to a zinc finger gene-rich region of human chromosome 19q13.4.

L. Ashworth, E. Branscomb, L. Stubbs, 1997, Genome research.

Homology-driven assembly of a sequence-ready mouse BAC contig map spanning regions related to the 46-Mb gene-rich euchromatic segments of human chromosome 19.

Paramvir S. Dehal, A. Olsen, L. Stubbs, 2001, Genomics.

Discovery of a novel, paternally expressed ubiquitin-specific processing protease gene through comparative analysis of an imprinted region of mouse chromosome 7 and human chromosome 19q13.4.

V. Noskov, L. Stubbs, X. Ren, 2000, Genome research.

Sexual differences of imprinted genes' expression levels.

Hana Kim, Joomyeong Kim, M. Faisal, 2014, Gene.

PEG3 Interacts with KAP1 through KRAB-A

Hana Kim, Joomyeong Kim, Hongzhi He, 2016, PloS one.

Exon sharing of a novel human zinc-finger gene, ZIM2, and paternally expressed gene 3 (PEG3).

L. Stubbs, J. Kim, Joomyeong Kim, 2000, Genomics.

YY1's longer DNA-binding motifs.

Joomyeong Kim, Jeong do Kim, 2009 .

YY1's longer DNA-binding motifs.

Joomyeong Kim, Jeong do Kim, 2009, Genomics.

Environmental effects on the epigenetics of neural crest cell development

Joomyeong Kim, H. Kim, T. Kang, 2013 .

An improved cloning strategy for chromatin-immunoprecipitation-derived DNA fragments.

Hana Kim, Joomyeong Kim, J. M. Huang, 2006, Analytical Biochemistry.

Imprinting control region (ICR) of the Peg3 domain.

Hana Kim, Joomyeong Kim, M. Faisal, 2012, Human molecular genetics.

Lineage-specific expansion of KRAB zinc-finger transcription factor genes: implications for the evolution of vertebrate regulatory networks.

E. Branscomb, L. Stubbs, J. Kim, 2003, Cold Spring Harbor symposia on quantitative biology.

YY1 is autoregulated through its own DNA-binding sites

Joomyeong Kim, Sungryul Yu, Jeong do Kim, 2009, BMC Molecular Biology.

AEBP2 as a potential targeting protein for Polycomb Repression Complex PRC2

Hana Kim, Joomyeong Kim, Keunsoo Kang, 2009, Nucleic acids research.

YY1's longer DNA-binding motifs

Joomyeong Kim, Jeong do Kim, Joomyeong Kim, 2023 .

Tandem zinc-finger gene families in mammals: insights and unanswered questions.

L. Ashworth, E. Branscomb, L. Stubbs, 1998, DNA sequence : the journal of DNA sequencing and mapping.

Zim1, a maternally expressed mouse Kruppel-type zinc-finger gene located in proximal chromosome 7.

L. Stubbs, J. Kim, Joomyeong Kim, 1999, Human molecular genetics.

A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors.

E. Branscomb, M. Tran-Gyamfi, Joomyeong Kim, 2006, Genome research.

MacroH2A1 knockdown effects on the Peg3 imprinted domain

Joomyeong Kim, J. Choo, Jeong do Kim, 2007, BMC Genomics.

APeg3: regulation of Peg3 through an evolutionarily conserved ncRNA.

Joomyeong Kim, Wesley D Frey, 2014, Gene.