Avinash Waghray

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Plasma proteomics reveals tissue-specific cell death and mediators of cell-cell interactions in severe COVID-19 patients

Paul J. Hoover, N. Hacohen, A. Villani, 2020, bioRxiv.

Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells

David S. Fischer, Malte D. Luecken, Daniel T. Montoro, 2020, bioRxiv.

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues

Fabian J Theis, D. Pe’er, A. Regev, 2020, Cell.

A dual molecular analogue tuner for dissecting protein function in mammalian cells

R. Brosh, I. Lemischka, N. Zheng, 2016, Nature Communications.

Tips from the embryonic lung

Avinash Waghray, J. Rajagopal, 2017, eLife.

SARS-CoV-2 Receptor ACE2 is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Enriched in Specific Cell Subsets Across Tissues

Fabian J Theis, Alison Yu, Alex K. Shalek, 2020, SSRN Electronic Journal.

COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets

Timothy L. Tickle, Samouil L. Farhi, Pardis C Sabeti, 2021, Nature.

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

Kyle J. Gaulton, David S. Fischer, Malte D. Luecken, 2021, Nature Medicine.

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Aviv Regev, Mario L. Suvà, Nikhil Wagle, 2019, Nature Medicine.

Longitudinal proteomic analysis of severe COVID-19 reveals survival-associated signatures, tissue-specific cell death, and cell-cell interactions

Paul J. Hoover, N. Hacohen, A. Villani, 2021, Cell Reports Medicine.

A revised airway epithelial hierarchy includes CFTR-expressing ionocytes

Aviv Regev, Hui Min Leung, Guillermo J. Tearney, 2018, Nature.

The Human Lung Cell Atlas - A high-resolution reference map of the human lung in health and disease.

Fabian J. Theis, Kerstin B. Meyer, Sarah A. Teichmann, 2019, American journal of respiratory cell and molecular biology.

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

David S. Fischer, Malte D. Luecken, Daniel T. Montoro, 2021, Nature Medicine.

Tex10 Coordinates Epigenetic Control of Super-Enhancer Activity in Pluripotency and Reprogramming.

Dmitri Papatsenko, Xin Huang, Kevin Kelley, 2015, Cell stem cell.

Tex 10 Coordinates Epigen etic Control of Super-Enhancer Activity in Pluripotency and Reprogramming Graphical Abstract Highlights

D. Papatsenko, Xiaohua Shen, Jianlong Wang, 2015 .

A genome-wide RNAi screen identifies opposing functions of Snai1 and Snai2 on the Nanog dependency in reprogramming.

J. Gingold, Jianlong Wang, C. Schaniel, 2014, Molecular cell.

Feedback control of pluripotency in embryonic stem cells: Signaling, transcription and epigenetics.

Dmitri Papatsenko, Avinash Waghray, D. Papatsenko, 2018, Stem cell research.

A revised airway epithelial hierarchy includes CFTR-expressing ionocytes

Daniel T. Montoro, Adam L. Haber, A. Regev, 2018, Nature.

Patient-specific induced pluripotent stem cell derived models of LEOPARD syndrome

Lei Yang, Roye Rozov, Jie Su, 2010, Nature.

Tbx3 Controls Dppa3 Levels and Exit from Pluripotency toward Mesoderm

R. Brosh, D. Papatsenko, H. Darr, 2015, Stem cell reports.

A Conserved Distal Lung Regenerative Pathway in Acute Lung Injury.

R. Chivukula, W. Jeck, M. Selig, 2018, The American journal of pathology.

Memory of Divisional History Directs the Continuous Process of Primitive Hematopoietic Lineage Commitment

R. Brosh, D. Papatsenko, Avi Ma’ayan, 2020, Stem cell reports.

Cystic Fibrosis and the Cells of the Airway Epithelium: What Are Ionocytes and What Do They Do?

R. Chivukula, B. Lin, Avinash Waghray, 2021, Annual review of pathology.

A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2

Timothy L. Tickle, Samouil L. Farhi, Daniel T. Montoro, 2021, bioRxiv.

Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal

Ben D. MacArthur, Dmitri Papatsenko, Vsevolod J. Makeev, 2015, Stem cell reports.

Transient HES5 Activity Instructs Mesodermal Cells toward a Cardiac Fate

I. Lemischka, Dung-Fang Lee, C. Pereira, 2017, Stem cell reports.

Author Correction: A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Timothy L. Tickle, Charles H. Yoon, A. Regev, 2020, Nature Network Boston.

Patient-specific induced pluripotent stem-cell-derived models of LEOPARD syndrome

Yongchao Ge, Yen-Sin Ang, Roye Rozov, 2010 .

Airway hillocks are injury-resistant reservoirs of unique plastic stem cells.

Diane E. Capen, B. Lin, Avinash Waghray, 2024, Nature.

Airway basal stem cells are necessary for the maintenance of functional intraepithelial airway macrophages

Adam L. Haber, A. Villani, M. Shivaraju, 2024, bioRxiv.