J. Dunlap

发表

Molecular Bases for Circadian Clocks

J. Dunlap, 1999, Cell.

The Phospho-Code Determining Circadian Feedback Loop Closure and Output in Neurospora.

J. Dunlap, J. Loros, Bin Wang, 2019, Molecular cell.

Circadian Clearance of a Fungal Pathogen from the Lung Is Not Based on Cell-intrinsic Macrophage Rhythms

J. Dunlap, J. Loros, Shan Chen, 2018, Journal of biological rhythms.

A HAD family phosphatase CSP-6 regulates the circadian output pathway in Neurospora crassa

S. Gerber, J. Dunlap, J. Loros, 2018, PLoS genetics.

Making Time: Conservation of Biological Clocks from Fungi to Animals

J. Dunlap, J. Loros, 2017, Microbiology spectrum.

The circadian system as an organizer of metabolism.

J. Dunlap, J. Hurley, J. Loros, 2016, Fungal genetics and biology : FG & B.

Circadian Oscillators: Around the Transcription-Translation Feedback Loop and on to Output.

J. Dunlap, J. Hurley, J. Loros, 2016, Trends in biochemical sciences.

Alternative Use of DNA Binding Domains by the Neurospora White Collar Complex Dictates Circadian Regulation and Light Responses

J. Dunlap, J. Loros, Bin Wang, 2015, Molecular and Cellular Biology.

Dissecting the mechanisms of the clock in Neurospora.

J. Dunlap, J. Hurley, J. Loros, 2015, Methods in enzymology.

Circadian Oscillator Neurospora Bright to Dim Oscillatory Response of the

L. Larrondo, J. Dunlap, J. Loros, 2014 .

6 Photobiology and Circadian Clocks in Neurospora

J. Dunlap, J. Hurley, J. Loros, 2014 .

High-resolution spatiotemporal analysis of gene expression in real time: in vivo analysis of circadian rhythms in Neurospora crassa using a FREQUENCY-luciferase translational reporter.

L. Larrondo, J. Dunlap, J. Loros, 2012, Fungal genetics and biology : FG & B.

The circadian clock of Neurospora crassa.

Jay C Dunlap, C. L. Baker, J. Dunlap, 2012, FEMS microbiology reviews.

Modulation of Clock Gene Expression by the Transcriptional Coregulator Receptor Interacting Protein 140 (RIP140)

Jennifer J. Loros, Jay C. Dunlap, M. Spinella, 2011, Journal of biological rhythms.

Simulating dark expressions and interactions of frq and wc-1 in the Neurospora circadian clock.

Peter Ruoff, Jay C Dunlap, P. Ruoff, 2008, Biophysical journal.

A circadian clock in Neurospora: how genes and proteins cooperate to produce a sustained, entrainable, and compensated biological oscillator with a period of about a day.

C. Hong, C. L. Baker, L. Larrondo, 2007, Cold Spring Harbor symposia on quantitative biology.

A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors

Christopher M. Crew, K. Borkovich, J. Dunlap, 2006, Proceedings of the National Academy of Sciences.

How fungi keep time: circadian system in Neurospora and other fungi.

Jay C Dunlap, J. Dunlap, J. Loros, 2006, Current opinion in microbiology.

The relationship between FRQ-protein stability and temperature compensation in the Neurospora circadian clock.

Peter Ruoff, Jay C Dunlap, P. Ruoff, 2005, Proceedings of the National Academy of Sciences of the United States of America.

The Neurospora Circadian System

Jay C Dunlap, J. Dunlap, J. Loros, 2004, Journal of biological rhythms.

Genetics and Molecular Biology of Circadian Rhythms

J. Dunlap, J. Loros, H. Colot, 2004 .

Lessons from the Genome Sequence of Neurospora crassa: Tracing the Path from Genomic Blueprint to Multicellular Organism

Michael Freitag, James E. Galagan, Alex Zelter, 2004, Microbiology and Molecular Biology Reviews.

Circadian Programs of Transcriptional Activation, Signaling, and Protein Turnover Revealed by Microarray Analysis of Mammalian Cells

Jennifer J. Loros, Jay C. Dunlap, Giles E. Duffield, 2002, Current Biology.

Molecular Genetics of Circadian Rhythms in Neurospora , a Prototypic Circadian System

J. Dunlap, J. Loros, 2001 .

Genetic and molecular analysis of circadian rhythms in Neurospora.

J. Dunlap, J. Loros, J J Loros, 2001, Annual review of physiology.

Phosphorylation of the Neurospora clock protein FREQUENCY determines its degradation rate and strongly influences the period length of the circadian clock.

J. Dunlap, J. Loros, Y. Liu, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Interconnected feedback loops in the Neurospora circadian system.

J. Dunlap, J. Loros, Kwangwon Lee, 2000, Science.

Regulation of clock genes

J. Dunlap, J. Loros, Y. Liu, 1999, Cellular and Molecular Life Sciences CMLS.

Circadian biology: Clocks for the real world

A. Millar, J. Dunlap, H. McWatters, 1999, Current Biology.

The Neurospora circadian clock-controlled gene, ccg-2, is allelic to eas and encodes a fungal hydrophobin required for formation of the conidial rodlet layer.

D. Bell-Pedersen, J. Dunlap, J. Loros, 1992, Genes & development.

Negative feedback defining a circadian clock: autoregulation of the clock gene frequency.

J. Dunlap, J. Loros, B. Aronson, 1994, Science.

Light-induced resetting of a circadian clock is mediated by a rapid increase in frequency transcript

Jennifer J. Loros, Jay C. Dunlap, Susan K. Crosthwaite, 1995, Cell.

Distinct cis-acting elements mediate clock, light, and developmental regulation of the Neurospora crassa eas (ccg-2) gene

D. Bell-Pedersen, J. Dunlap, J. Loros, 1996, Molecular and cellular biology.

Isolation and analysis of the arg-13 gene of Neurospora crassa.

J. Dunlap, Q. Liu, 1996, Genetics.

Genetics and molecular analysis of circadian rhythms.

J. Dunlap, J C Dunlap, 1996, Annual review of genetics.

Light-Induced Resetting of a Mammalian Circadian Clock Is Associated with Rapid Induction of the mPer1 Transcript

Lily Yan, Shigenobu Shibata, Yasufumi Shigeyoshi, 1997, Cell.

Alternative Initiation of Translation and Time-Specific Phosphorylation Yield Multiple Forms of the Essential Clock Protein FREQUENCY

Yi Liu, Jennifer J. Loros, Jay C. Dunlap, 1997, Cell.

Thermally Regulated Translational Control of FRQ Mediates Aspects of Temperature Responses in the Neurospora Circadian Clock

Yi Liu, Jay C Dunlap, J. Dunlap, 1997, Cell.

Neurospora wc-1 and wc-2: transcription, photoresponses, and the origins of circadian rhythmicity.

J. Dunlap, J. Loros, S. Crosthwaite, 1997, Science.

Dissection of a circadian oscillation into discrete domains.

M. Merrow, J. Dunlap, N. Garceau, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Glyceraldehyde-3-phosphate Dehydrogenase Is Regulated on a Daily Basis by the Circadian Clock*

J. Dunlap, J. Loros, M. Shinohara, 1998, The Journal of Biological Chemistry.

The genome sequence of the filamentous fungus Neurospora crassa

E. Mauceli, B. Birren, C. Nusbaum, 2003, Nature.

Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways.

Alexander M. Crowell, Meaghan S. Jankowski, Anil K. Shukla, 2018, Cell systems.

The Fast-Evolving phy-2 Gene Modulates Sexual Development in Response to Light in the Model Fungus Neurospora crassa

J. Townsend, Jigang Li, J. Dunlap, 2016, mBio.

Light sensing by opsins and fungal ecology: NOP‐1 modulates entry into sexual reproduction in response to environmental cues

J. Townsend, Jigang Li, J. Dunlap, 2018, Molecular ecology.

Chronobiology: Biological Timekeeping

Jennifer J. Loros, Jay C. Dunlap, J. Dunlap, 2009 .

1 Prediction of Metabolite Concentrations , 2 Rate Constants and Post-Translational Regulation 3 using Maximum Entropy-based Simulations 4 with Application to Central Metabolism of 5 Neurospora crassa 6

Douglas J. Baxter, Jeremy D. Zucker, S. Baker, 2018 .

Prediction of Metabolite Concentrations, Rate Constants and Post-Translational Regulation Using Maximum Entropy-Based Simulations with Application to Central Metabolism of Neurospora crassa

Douglas J. Baxter, Jeremy D. Zucker, S. Baker, 2018, Processes.

Long and short isoforms of Neurospora clock protein FRQ support temperature‐compensated circadian rhythms

M. Brunner, J. Dunlap, J. Loros, 2007, FEBS letters.

Post-translational modifications in circadian rhythms.

C. L. Baker, J. Dunlap, J. Loros, 2009, Trends in biochemical sciences.

Fungal Light Sensing at the Bench and Beyond.

J. Dunlap, J. Loros, K. K. Fuller, 2016, Advances in genetics.

Aspergillus fumigatus Photobiology Illuminates the Marked Heterogeneity between Isolates

R. A. Cramer, J. Dunlap, J. Loros, 2016, mBio.

The Fungal Pathogen Aspergillus fumigatus Regulates Growth, Metabolism, and Stress Resistance in Response to Light

J. Dunlap, J. Loros, K. K. Fuller, 2013, mBio.

Neurospora illuminates fungal photoreception.

J. Dunlap, J. Loros, Chen-Hui Chen, 2010, Fungal Genetics and Biology.

Genetic and Molecular Analysis of Phytochromes from the Filamentous Fungus Neurospora crassa

R. Vierstra, J. Dunlap, J. Loros, 2005, Eukaryotic Cell.

Biological Significance of Photoreceptor Photocycle Length: VIVID Photocycle Governs the Dynamic VIVID-White Collar Complex Pool Mediating Photo-adaptation and Response to Changes in Light Intensity

J. Dunlap, J. Loros, A. Gladfelter, 2015, PLoS genetics.

Physical interaction between VIVID and white collar complex regulates photoadaptation in Neurospora

J. Dunlap, J. Loros, A. Gladfelter, 2010, Proceedings of the National Academy of Sciences.

Structure of the frequency‐interacting RNA helicase: a protein interaction hub for the circadian clock

J. Widom, B. Crane, J. Dunlap, 2016, The EMBO journal.

A role for gene expression and mRNA stability in nutritional compensation of the circadian clock

J. Dunlap, J. Loros, Christina M. Kelliher, 2022, bioRxiv.

Homology effects: the difference between 1 and 2.

C.-ting Wu, J. Dunlap, 2002, Advances in genetics.

Closely watched clocks: molecular analysis of circadian rhythms in Neurospora and Drosophila.

J. Dunlap, 1990, Trends in genetics : TIG.

Analysis of circadian rhythms in Neurospora: overview of assays and genetic and molecular biological manipulation.

J. Dunlap, J. Loros, 2005, Methods in enzymology.

Molecular analysis of the Neurospora clock: cloning and characterization of the frequency and period-4 genes.

J. Dunlap, Q. Liu, B. Aronson, 1992, Chronobiology international.

The genetic basis of the circadian clock: identification of frq and FRQ as clock components in Neurospora.

D. Bell-Pedersen, M. Merrow, J. Dunlap, 1995, Ciba Foundation symposium.

Neurospora crassa clock-controlled genes are regulated at the level of transcription

J. Dunlap, J. Loros, 1991 .

Evaluating the circadian rhythm and response to glucose addition in dispersed growth cultures of Neurospora crassa.

J. Dunlap, J. Loros, Christina M. Kelliher, 2020, Fungal biology.

A developmental cycle masks output from the circadian oscillator under conditions of choline deficiency in Neurospora

L. Larrondo, J. Dunlap, J. Loros, 2007, Proceedings of the National Academy of Sciences.

Light induction of the clock-controlled geneccg-1 is not transduced through the circadian clock inNeurospora crassa

G. Macino, J. Dunlap, J. Loros, 1995, Molecular and General Genetics MGG.

The genetic and molecular dissection of a prototypic circadian system.

D. Bell-Pedersen, M. Merrow, J. Dunlap, 1996, Progress in brain research.

On the role of protein synthesis in the circadian clock of Neurospora crassa.

J. Dunlap, J. F. Feldman, Jay C. Dunlap, 1988, Proceedings of the National Academy of Sciences of the United States of America.

Microarray and real-time PCR analyses reveal mating type-dependent gene expression in a homothallic fungus

U. Kück, M. Nowrousian, S. Pöggeler, 2006, Molecular Genetics and Genomics.

Functional Genomics in Fungi

M. Nowrousian, J. Dunlap, M. A. Nelson, 2004 .

The circadian Per1 and Per2 genes influence alcohol intake, reinforcement, and blood alcohol levels

J. Dunlap, J. Loros, J. Gamsby, 2013, Behavioural Brain Research.

A role for gene expression and mRNA stability in nutritional compensation of the circadian clock

J. Dunlap, J. Loros, Christina M. Kelliher, 2022, bioRxiv.

Cellular Calcium Levels Influenced by NCA-2 Impact Circadian Period Determination in Neurospora

S. Gerber, J. Dunlap, J. Loros, 2021, bioRxiv.

Cell biology: A fable of too much too fast

J. Dunlap, J. Hurley, 2013, Nature.

A High-Density SNP Map for Neurospora crassa

B. Birren, M. Sachs, É., 2008 .

period-1 encodes an ATP-dependent RNA helicase that influences nutritional compensation of the Neurospora circadian clock

S. Baker, J. Dunlap, J. Loros, 2015, Proceedings of the National Academy of Sciences.

BLUE LIGHT PHOTORECEPTORS -BEYOND PHOTOTROPINS AND CRYPTOCHROMES

J. Dunlap, 2006 .

[28] Cell-free components in dinoflagellate bioluminescence. The particulate activity: Scintillons; the soluble components: Luciferase, luciferin, and luciferin-binding protein

J. W. Hastings, J. Dunlap, 1986 .

Biochemistry of dinoflagellate bioluminescence: purification and characterization of dinoflagellate luciferin from Pyrocystis lunula.

J. W. Hastings, J. Dunlap, 1981, Biochemistry.

The effects of protein synthesis inhibitors on theGonyaulax clock: II. The effect of cycloheximide on ultrastructural parameters

L. Rensing, J. W. Hastings, J. Dunlap, 1980 .

Retinoic Acid Mediates Long-Paced Oscillations in Retinoid Receptor Activity: Evidence for a Potential Role for RIP140

M. Spinella, J. Dunlap, J. Loros, 2009, PloS one.

Comparison of the biosynthetic and biodegradative ornithine decarboxylases of Escherichia coli.

D. Morris, J. Dunlap, D. Applebaum, 1977, Biochemistry.

Circadian rhythms. An end in the beginning.

J. Dunlap, 1998, Science.

Isolation and Analysis of the arg-13 Gene of Neurospora crmsa

J. Dunlap, Qiuyun Liu, 2002 .

The biological clock in Gonyaulax controls luciferase activity by regulating turnover.

J. W. Hastings, J. Dunlap, 1981, The Journal of biological chemistry.

Crossreactivity between the light-emitting systems of distantly related organisms: Novel type of light-emitting compound.

O. Shimomura, J. W. Hastings, J. Dunlap, 1980, Proceedings of the National Academy of Sciences of the United States of America.

Yes, circadian rhythms actually do affect almost everything

J. Dunlap, J. Loros, 2016, Cell Research.

Optimized fluorescent proteins for 4-color and photoconvertible live-cell imaging in Neurospora crassa

J. Dunlap, J. Loros, Ziyan Wang, 2022, bioRxiv.

Fungal photobiology: visible light as a signal for stress, space and time

J. Dunlap, J. Loros, K. Fuller, 2015, Current Genetics.

Phosphorylation, disorder, and phase separation govern the behavior of Frequency in the fungal circadian clock

A. Bah, B. Crane, J. Dunlap, 2022, bioRxiv.

White Collar-1, a Circadian Blue Light Photoreceptor, Binding to the frequency Promoter

J. Dunlap, J. Loros, Yi Liu, 2002, Science.

Nutritional compensation of the circadian clock is a conserved process influenced by gene expression regulation and mRNA stability

J. Dunlap, J. Loros, Christina M. Kelliher, 2023, PLoS biology.

The Neurospora clock gene frequency shares a sequence element with the Drosophila clock gene period

C. R. McClung, J. Dunlap, B. A. Fox, 1989, Nature.

Roles for WHITE COLLAR-1 in circadian and general photoperception in Neurospora crassa.

J. Dunlap, J. Loros, Kwangwon Lee, 2003, Genetics.

A Role for Id2 in Regulating Photic Entrainment of the Mammalian Circadian System

Jennifer J. Loros, Jay C. Dunlap, Mark A. Israel, 2009, Current Biology.

Neurospora crassa: A Unique System for Studying Circadian Rhythms

J. Dunlap, J. F. Feldman, 1983 .

Enabling a community to dissect an organism: overview of the Neurospora functional genomics project.

Kevin McCluskey, Christopher M. Crew, Jay C Dunlap, 2007, Advances in genetics.

Advances in Genetics

Jeffrey C. Hall, Veronica van Heyningen, Jay C. Dunlap, 1947 .

Dinoflagellate luciferin is structurally related to chlorophyll

O. Shimomura, J. Dunlap, J. Hastings, 1981 .

The effects of protein synthesis inhibitors on theGonyaulax clock

L. Rensing, J. W. Hastings, J. Dunlap, 1980, Journal of comparative physiology.

Circadian clock-controlled genes isolated from Neurospora crassa are late night- to early morning-specific.

D. Bell-Pedersen, J. Dunlap, J. Loros, 1996, Proceedings of the National Academy of Sciences of the United States of America.

Development of the CRISPR/Cas9 System for Targeted Gene Disruption in Aspergillus fumigatus

J. Dunlap, J. Loros, Shan Chen, 2015, Eukaryotic Cell.

High-throughput production of gene replacement mutants in Neurospora crassa.

Christopher M. Crew, K. Borkovich, J. Dunlap, 2011, Methods in molecular biology.

How temperature changes reset a circadian oscillator.

M. Merrow, J. Dunlap, J. Loros, 1998, Science.

Functional Characterization of MAT1-1-Specific Mating-Type Genes in the Homothallic Ascomycete Sordaria macrospora Provides New Insights into Essential and Nonessential Sexual Regulators

M. Nowrousian, S. Pöggeler, J. Dunlap, 2010, Eukaryotic Cell.

Regulators Essential and Nonessential Sexual macrospora Provides New Insights into Homothallic Ascomycete Sordaria MAT 1-1-Specific Mating-Type Genes in the Functional Characterization of

M. Nowrousian, S. Pöggeler, J. Dunlap, 2010 .

Role for antisense RNA in regulating circadian clock function in Neurospora crassa

J. Dunlap, J. Loros, S. Crosthwaite, 2003, Nature.

The novel ER membrane protein PRO41 is essential for sexual development in the filamentous fungus Sordaria macrospora

U. Kück, M. Nowrousian, J. Dunlap, 2007, Molecular microbiology.

PRD-2 directly regulates casein kinase I and counteracts nonsense-mediated decay in the Neurospora circadian clock

C. L. Baker, J. Dunlap, J. Loros, 2020, eLife.

Live-cell monitoring of periodic gene expression in synchronous human cells identifies Forkhead genes involved in cell cycle control

Gavin D. Grant, M. Whitfield, L. K. George, 2012, Molecular biology of the cell.

Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes.

B. Roe, H. Lai, D. Bell-Pedersen, 2001, Genetics.

Conformational Switching in the Fungal Light Sensor Vivid

Jennifer J. Loros, Jay C. Dunlap, Brian D. Zoltowski, 2007, Science.

Neurospora Clock-Controlled Gene 9 (ccg-9) Encodes Trehalose Synthase: Circadian Regulation of Stress Responses and Development

D. Bell-Pedersen, J. Dunlap, J. Loros, 2002, Eukaryotic Cell.

A quick RNA mini-prep for Neurospora mycelial cultures

J. Dunlap, A. Lichens-Park, K. Lindgren, 1990 .

Cross-species microarray hybridization to identify developmentally regulated genes in the filamentous fungus Sordaria macrospora

U. Kück, M. Nowrousian, J. Dunlap, 2005, Molecular Genetics and Genomics.

CHD1 Remodels Chromatin and Influences Transient DNA Methylation at the Clock Gene frequency

Jennifer J. Loros, Jay C. Dunlap, Eric U. Selker, 2011, PLoS genetics.

Genome‐wide analysis of light‐inducible responses reveals hierarchical light signalling in Neurospora

R. H. Gross, J. Dunlap, J. Loros, 2009, The EMBO journal.

High-throughput construction of gene deletion cassettes for generation of Neurospora crassa knockout strains.

Christopher M. Crew, K. Borkovich, J. Dunlap, 2010, Methods in molecular biology.

An efficient method for gene disruption in Neurospora crassa

J. Dunlap, J. Loros, B. Aronson, 1994, Molecular and General Genetics MGG.

Circadian output, input, and intracellular oscillators: insights into the circadian systems of single cells.

C. Hong, C. L. Baker, L. Larrondo, 2007, Cold Spring Harbor symposia on quantitative biology.

Nuclear localization is required for function of the essential clock protein FRQ

J. Dunlap, J. Loros, Chenghua Luo, 1998, The EMBO journal.

Fungal Functional Genomics: Tunable Knockout-Knock-in Expression and Tagging Strategies

C. L. Baker, L. Larrondo, J. Dunlap, 2009, Eukaryotic Cell.

Salad Days in the Rhythms Trade

J. Dunlap, 2008, Genetics.

Circadian Rhythms, Photobiology and Functional Genomics in Neurospora

J. Dunlap, J. Loros, 2006 .

New cloning vectors using benomyl resistance as a dominant marker for selection inNeurospora crassa and in other filamentous fungi

C. R. McClung, J. Dunlap, M. Orbach, 1989 .

Molecular cloning of genes under control of the circadian clock in Neurospora.

J. Dunlap, J. Loros, S. Denome, 1989, Science.

Learning and Imputation for Mass-spec Bias Reduction (LIMBR)

Casey S. Greene, Alexander M. Crowell, Jennifer J. Loros, 2018, bioRxiv.

Circadian clock locus frequency: protein encoded by a single open reading frame defines period length and temperature compensation.

J. Dunlap, B. Aronson, K. Johnson, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Translation Initiation from Conserved Non-AUG Codons Provides Additional Layers of Regulation and Coding Capacity

Audrey M. Michel, M. Sachs, J. F. Atkins, 2017, mBio.

Functional Analysis of the Aspergillus nidulans Kinome

J. Dunlap, C. Ringelberg, S. Osmani, 2013, PloS one.

Modulation of Circadian Gene Expression and Metabolic Compensation by the RCO-1 Corepressor of Neurospora crassa

L. Larrondo, J. Dunlap, J. Loros, 2016, Genetics.

The lnterplay of Light and the Circadian Clock’

G. Macino, J. Dunlap, J. Loros, 2002 .

The Interplay of Light and the Circadian Clock (Independent Dual Regulation of Clock-Controlled Gene ccg-2(eas)

G. Macino, J. Dunlap, J. Loros, 1993, Plant physiology.

Genetic analysis of circadian clocks.

J. Dunlap, J C Dunlap, 1993, Annual review of physiology.

Guidelines for Genome-Scale Analysis of Biological Rhythms

Pierre Baldi, Andrew J. Millar, Francis J. Doyle, 2017, Journal of biological rhythms.

The PAS Protein VIVID Defines a Clock-Associated Feedback Loop that Represses Light Input, Modulates Gating, and Regulates Clock Resetting

J. Dunlap, J. Loros, C. Heintzen, 2001, Cell.

Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock.

S. Gerber, C. L. Baker, J. Dunlap, 2009, Molecular cell.

Execution of the circadian negative feedback loop in Neurospora requires the ATP-dependent chromatin-remodeling enzyme CLOCKSWITCH.

J. Dunlap, J. Loros, W. Belden, 2007, Molecular cell.

Analysis of circadian output rhythms of gene expression in Neurospora and mammalian cells in culture.

G. Duffield, J. Dunlap, J. Loros, 2005, Methods in enzymology.

Light-regulated promoters for tunable, temporal, and affordable control of fungal gene expression

J. Dunlap, J. Loros, K. Fuller, 2018, Applied Microbiology and Biotechnology.

A Nitrate-Induced frq-Less Oscillator in Neurospora crassa

P. Ruoff, M. K. Christensen, J. Dunlap, 2004, Journal of biological rhythms.

Comparative effect of synthetic estrogenic substances on the postpartum breast.

J. Dunlap, A. W. Diddle, 1948, The Journal of clinical endocrinology and metabolism.

Intrinsic disorder is an essential characteristic of components in the conserved circadian circuit

J. Dunlap, J. Hurley, Jacqueline F. Pelham, 2020, Cell Communication and Signaling.

Global Analysis of Serine-Threonine Protein Kinase Genes in Neurospora crassa

Jacqueline A. Servin, K. Borkovich, J. Dunlap, 2011, Eukaryotic Cell.

University of Groningen Genetic and Molecular Characterization of a Cryptochrome from the Filamentous Fungus Neurospora crassa

M. Merrow, T. Roenneberg, J. Dunlap, 2010 .

Conserved RNA helicase FRH acts nonenzymatically to support the intrinsically disordered neurospora clock protein FRQ.

L. Larrondo, J. Dunlap, J. Hurley, 2013, Molecular cell.

Circadian spontaneous bioluminescent glow and flashing ofGonyaulax polyedra

W. Vetterling, J. W. Hastings, J. Dunlap, 1980, Journal of comparative physiology.

Decoupling circadian clock protein turnover from circadian period determination

C. L. Baker, L. Larrondo, J. Dunlap, 2015, Science.

The Neurospora circadian clock regulates a transcription factor that controls rhythmic expression of the output eas(ccg‐2) gene

D. Bell-Pedersen, Z. Lewis, J. Dunlap, 2001, Molecular microbiology.

Circadian Rhythmicity by Autocatalysis

Peter Ruoff, Jennifer J. Loros, Jay C. Dunlap, 2006, PLoS Comput. Biol..

WC‐2 mediates WC‐1–FRQ interaction within the PAS protein‐linked circadian feedback loop of Neurospora

J. Dunlap, J. Loros, D. Denault, 2001, The EMBO journal.

CLOCK leaves its mark on histones.

J. Dunlap, J. Loros, W. Belden, 2006, Trends in biochemical sciences.

Circadian Clock-Specific Roles for the Light Response Protein WHITE COLLAR-2

J. Dunlap, J. Loros, M. Collett, 2001, Molecular and Cellular Biology.

A Pro- and Anti-inflammatory Axis Modulates the Macrophage Circadian Clock

J. Dunlap, J. Loros, Shan Chen, 2020, Frontiers in Immunology.

A Tool Set for the Genome-Wide Analysis of Neurospora crassa by RT-PCR

Alexander M. Crowell, J. Dunlap, J. Hurley, 2015, G3: Genes, Genomes, Genetics.

Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential

J. Galagan, Chao Cheng, E. Lindquist, 2014, Proceedings of the National Academy of Sciences.

The PAS/LOV protein VIVID supports a rapidly dampened daytime oscillator that facilitates entrainment of the Neurospora circadian clock.

J. Dunlap, J. Loros, C. Heintzen, 2005, Genes & development.

The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion

J. Galagan, E. Azizi, M. Sachs, 2016, G3: Genes, Genomes, Genetics.

Bright to Dim Oscillatory Response of the Neurospora Circadian Oscillator

L. Larrondo, J. Dunlap, J. Loros, 2014, Journal of biological rhythms.

The frequency gene is required for temperature-dependent regulation of many clock-controlled genes in Neurospora crassa.

M. Nowrousian, G. Duffield, J. Dunlap, 2003, Genetics.

Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY

J. Dunlap, J. Loros, A. Froehlich, 2003, Proceedings of the National Academy of Sciences of the United States of America.

The band mutation in Neurospora crassa is a dominant allele of ras-1 implicating RAS signaling in circadian output.

L. Larrondo, J. Dunlap, J. Loros, 2007, Genes & development.

Fully Codon-Optimized luciferase Uncovers Novel Temperature Characteristics of the Neurospora Clock

L. Larrondo, J. Dunlap, J. Loros, 2007, Eukaryotic Cell.

Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequency.

J. Dunlap, J. Loros, H. Colot, 2005, Molecular biology of the cell.

Functional analysis of 110 phosphorylation sites on the circadian clock protein FRQ identifies clusters determining period length and temperature compensation

J. Dunlap, Bin Wang, Elizabeth-Lauren Stevenson, 2022, G3.

A Kinetic Study of the Effects of Light on Circadian Rhythmicity of the frq Promoter of Neurospora crassa

L. Larrondo, J. Dunlap, J. Loros, 2014, Journal of biological rhythms.

Fungal photobiology: visible light as a signal for stress, space and time

J. Dunlap, J. Loros, K. Fuller, 2014, Current Genetics.

Circadian Control Sheds Light on Fungal Bioluminescence

Cassius Vinicius Stevani, J. Dunlap, J. Loros, 2015, Current Biology.

Structure of a Light-Activated LOV Protein Dimer That Regulates Transcription

B. Crane, J. Dunlap, J. Loros, 2011, Science Signaling.

The Neurospora Checkpoint Kinase 2: A Regulatory Link Between the Circadian and Cell Cycles

Jay C Dunlap, C. L. Baker, J. Dunlap, 2006, Science.

Seeing the world differently: variability in the photosensory mechanisms of two model fungi.

J. Dunlap, J. Loros, Arko Dasgupta, 2016, Environmental microbiology.

Genome-Wide Characterization of Light-Regulated Genes in Neurospora crassa

J. Galagan, M. Sachs, J. Townsend, 2014, G3: Genes, Genomes, Genetics.

Running a Clock Requires Quality Time Together

Jay C Dunlap, J. Dunlap, 2006, Science.

Eukaryotic circadian systems: cycles in common

J. Dunlap, J. Loros, Yi Liu, 1999, Genes to cells : devoted to molecular & cellular mechanisms.

Common threads in eukaryotic circadian systems.

J. Dunlap, Jay C. Dunlap, 1998, Current opinion in genetics & development.

Light and clock expression of the Neurospora clock gene frequency is differentially driven by but dependent on WHITE COLLAR-2.

J. Dunlap, J. Loros, N. Garceau, 2002, Genetics.

CK2 and temperature compensation in Neurospora

C. L. Baker, J. Dunlap, J. Loros, 2009 .

A Role for Casein Kinase 2 in the Mechanism Underlying Circadian Temperature Compensation

C. L. Baker, J. Dunlap, J. Loros, 2009, Cell.

Neurospora crassa clock-controlled genes are regulated at the level of transcription

J. Dunlap, J. Loros, 1991, Molecular and cellular biology.

Dimerization and nuclear entry of mPER proteins in mammalian cells.

F. Tamanini, A. Yasui, S. Yamaguchi, 2000, Genes & development.

Microbial circadian oscillatory systems in Neurospora and Synechococcus: models for cellular clocks.

H. Iwasaki, J. Dunlap, Hideo Iwasaki, 2000, Current opinion in microbiology.

Rtprt Circadian rhythms *

Theresa, I. Zucker, R. Silver, 2002 .

PRD-2 mediates clock-regulated perinuclear localization of clock gene RNAs within the circadian cycle of Neurospora

J. Dunlap, J. Loros, A. Gladfelter, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Phosphorylation, disorder, and phase separation govern the behavior of Frequency in the fungal circadian clock

A. Bah, B. Crane, J. Dunlap, 2023, bioRxiv.

Quantitative single molecule RNA-FISH and RNase-free cell wall digestion in Neurospora crassa.

J. Dunlap, J. Loros, A. Gladfelter, 2021, Fungal Genetics and Biology.

Just-So Stories and Origin Myths: Phosphorylation and Structural Disorder in Circadian Clock Proteins.

J. Dunlap, J. Loros, 2017, Molecules and Cells.

Light-Inducible System for Tunable Protein Expression in Neurospora crassa

J. Dunlap, J. Hurley, J. Loros, 2012, G3: Genes, Genomes, Genetics.

Evolution of the repression mechanisms in circadian clocks

Daniel B. Forger, D. Forger, J. Dunlap, 2022, Genome Biology.

Nonsense mediated decay and a novel protein Period-2 regulate casein kinase I in an opposing manner to control circadian period in Neurospora crassa

C. L. Baker, J. Dunlap, J. Loros, 2020, bioRxiv.

A Phylogenetically Conserved DNA Damage Response Resets the Circadian Clock

J. Dunlap, J. Loros, J. Gamsby, 2009, Journal of biological rhythms.

Proteins in the Neurospora Circadian Clockworks*

J. Dunlap, 2006, Journal of Biological Chemistry.

Inhibitors of protein synthesis on 80S ribosomes phase shift the Gonyaulax clock.

J. W. Hastings, J. Dunlap, W. Taylor, 1982, The Journal of experimental biology.

Aging Well with a Little Wine and a Good Clock

J. Dunlap, W. Belden, 2013, Cell.

Kinases and circadian clocks: per goes it alone.

J. Dunlap, 2004, Developmental Cell.

SIRT1 Is a Circadian Deacetylase for Core Clock Components

J. Dunlap, W. Belden, 2008, Cell.

Closing the circadian negative feedback loop: FRQ-dependent clearance of WC-1 from the nucleus.

P. Ruoff, C. Hong, J. Dunlap, 2008, Genes & development.

Assignment of an essential role for the Neurospora frequency gene in circadian entrainment to temperature cycles.

D. Bell-Pedersen, J. Dunlap, J. Loros, 2005, Proceedings of the National Academy of Sciences of the United States of America.

An End in the Beginning

J. Dunlap, Jay Dunlap, Jay Dunlap, 1998, Science.

implicating RAS signaling in circadian output ras-1 is a dominant allele of Neurospora crassa mutation in band The Material Supplemental

L. Larrondo, J. Dunlap, J. Loros, 2007 .

Circadian Clocks and their Adjustment

D. Bell-Pedersen, M. Merrow, J. Dunlap, 1995 .

Structure-function analysis of 110 phosphorylation sites on the circadian clock protein FRQ identifies clusters determining period length and temperature compensation

J. Dunlap, Bin Wang, Elizabeth-Lauren Stevenson, 2022, bioRxiv.

The effects of protein synthesis inhibitors on theGonyaulax clock

J. W. Hastings, J. Dunlap, W. Taylor, 1980 .

Prediction Interval Ranking Score: Identification of Invariant Expression from Time Series

Alexander M. Crowell, Jennifer J. Loros, Jay C. Dunlap, 2018, bioRxiv.

FRQ-Interacting RNA Helicase Mediates Negative and Positive Feedback in the Neurospora Circadian Clock

J. Dunlap, J. Loros, M. Shi, 2010, Genetics.

Phosphorylation, disorder, and phase separation govern the behavior of Frequency in the fungal circadian clock

A. Bah, B. Crane, J. Dunlap, 2023, bioRxiv.

Neurospora WC-1 Recruits SWI/SNF to Remodel frequency and Initiate a Circadian Cycle

S. Gerber, J. Dunlap, J. Loros, 2014, PLoS genetics.

A crucial role for dynamic expression of components encoding the negative arm of the circadian clock

L. M. Markillie, J. Dunlap, J. Loros, 2023, Nature communications.

A crucial role for dynamic expression of components encoding the negative arm of the circadian clock

L. M. Markillie, J. Dunlap, J. Loros, 2023, bioRxiv.

Population genomics and local adaptation in wild isolates of a model microbial eukaryote

Rachel B. Brem, D. Kowbel, R. Brem, 2011, Proceedings of the National Academy of Sciences.

Domains required for the interaction of the central negative element FRQ with its transcriptional activator WCC within the core circadian clock of Neurospora

J. Dunlap, Bin Wang, 2023, The Journal of biological chemistry.

Domains Required for FRQ-WCC Interaction within the Core Circadian Clock of Neurospora

J. Dunlap, Bin Wang, 2023, bioRxiv.

Quantitative single molecule RNA-FISH and RNase-free cell wall digestion in Neurospora crassa

J. Dunlap, J. Loros, A. Gladfelter, 2021, bioRxiv.

Advances in Genetics

Jeffrey C. Hall, J. Thoday, J. Dunlap, 1947 .

Alternative Use of DNA Binding Domains by the Neurospora White Collar Complex Dictates Circadian Regulation and Light Responses

J. Dunlap, J. Loros, Bin Wang, 2015, Molecular and Cellular Biology.

Conserved RNA helicase FRH acts nonenzymatically to support the intrinsically disordered neurospora clock protein FRQ.

L. Larrondo, J. Dunlap, J. Hurley, 2013, Molecular cell.

Circadian Rhythms in Neurospora

J. Dunlap, 2001 .

7-28-2006 Circadian Rhythmicity by Autocatalysis

P. Ruoff, C. Hong, J. Dunlap, 2018 .

Seeing the world differently: variability in the photosensory mechanisms of two model fungi.

J. Dunlap, J. Loros, Arko Dasgupta, 2016, Environmental microbiology.

Neurospora illuminates fungal photoreception.

J. Dunlap, J. Loros, Chen-Hui Chen, 2010, Fungal genetics and biology : FG & B.

A High-Density Single Nucleotide Polymorphism Map for Neurospora crassa

Danny S. Park, B. Birren, J. Galagan, 2009, Genetics.

Genetic and Molecular Characterization of a Cryptochrome from the Filamentous Fungus Neurospora crassa

M. Merrow, T. Roenneberg, J. Dunlap, 2010, Eukaryotic Cell.

The molecular workings of the Neurospora biological clock.

M. Nowrousian, J. Dunlap, J. Loros, 2003, Novartis Foundation symposium.

Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential

J. Galagan, Chao Cheng, E. Lindquist, 2014, Proceedings of the National Academy of Sciences.

Neurospora Clock-Controlled Gene 9 (ccg-9) Encodes Trehalose Synthase: Circadian Regulation of Stress Responses and Development

D. Bell-Pedersen, J. Dunlap, J. Loros, 2002, Eukaryotic Cell.

Intergeneric complementation of a circadian rhythmicity defect: phylogenetic conservation of structure and function of the clock gene frequency.

M. Merrow, J. Dunlap, M. Merrow, 1994, The EMBO journal.

Chronobiology: Biological Timekeeping

J. Dunlap, J. Loros, P. Decoursey, 2009 .

Critical pulses of anisomycin drive the circadian oscillator inGonyaulax towards its singularity

J. W. Hastings, J. Dunlap, H. Broda, 1982, Journal of comparative physiology.

Protein synthesis and protein turnover in circadian cycles.

J. W. Hastings, J. Dunlap, W. Taylor, 1981, Current topics in cellular regulation.

Molecular Bases for Circadian Clocks Review review word for the late 80 s and early 90 s would have

J. Dunlap, 1999 .

The genetic basis of the circadian clock: identification of frq and FRQ as clock components in Neurospora.

D. Bell-Pedersen, J. Dunlap, J. Loros, 1995, Ciba Foundation symposium.