B. Armitage

发表

Fluoromodules Consisting of a Promiscuous RNA Aptamer and Red or Blue Fluorogenic Cyanine Dyes: Selection, Characterization, and Bioimaging.

Xiaohong Tan, M. Bruchez, A. Waggoner, 2017, Journal of the American Chemical Society.

Fluorescent DNA nanotags: supramolecular fluorescent labels based on intercalating dye arrays assembled on nanostructured DNA templates.

A. Waggoner, G. Fisher, B. Ballou, 2007, Journal of the American Chemical Society.

Fluorescent DNA nanotags based on a self-assembled DNA tetrahedron.

B. Armitage, Hayriye Ozhalici-Unal, Hayriye Ozhalici-Unal, 2009, ACS nano.

DNA-Templated Formation of a Helical Cyanine Dye J-Aggregate

Miaomiao Wang, B. Armitage, Miaomiao Wang, 2000 .

Heterocyclic polymethine dyes : synthesis, properties and applications

L. Strekowski,, B. Armitage, 2008 .

Telomeric repeat mutagenicity in human somatic cells is modulated by repeat orientation and G-quadruplex stability.

K. Eckert, R. Damerla, B. Armitage, 2010, DNA repair.

Effect of LNA Modifications on Small Molecule Binding to Nucleic Acids

B. Armitage, H. Hansen, T. Koch, 2004, Journal of biomolecular structure & dynamics.

Hybridization of G-quadruplex-forming peptide nucleic acids to guanine-rich DNA templates inhibits DNA polymerase η extension.

B. Armitage, P. Opresko, Connor T. Murphy, 2014, Biochemistry.

RNA guanine quadruplex invasion by complementary and homologous PNA probes.

B. Armitage, Violeta L. Marin, V. Marin, 2005, Journal of the American Chemical Society.

High affinity γPNA sandwich hybridization assay for rapid detection of short nucleic acid targets with single mismatch discrimination.

Johnathan M Goldman, D. Ly, Li Zhang, 2013, Biomacromolecules.

Antitumor effects of EGFR antisense guanidine-based peptide nucleic acids in cancer models.

Simion I. Chiosea, Simon C Watkins, D. Ly, 2013, ACS chemical biology.

Synthesis and Characterization of Conformationally-Preorganized , MiniPEG-Containing γ PNAs with Superior Hybridization Properties and Water Solubility

D. Ly, B. Armitage, R. Bahal, 2011 .

Antigene leaps forward through an open door

B. Armitage, 2005, Nature chemical biology.

Wavelength Dependence of the Fluorescence Quenching Efficiency of Nearby Dyes by Gold Nanoclusters and Nanoparticles: The Roles of Spectral Overlap and Particle Size.

R. Jin, Zhikun Wu, A. Jaquins-Gerstl, 2011, The journal of physical chemistry. C, Nanomaterials and interfaces.

Hybridization of complementary and homologous peptide nucleic acid oligomers to a guanine quadruplex-forming RNA.

B. Armitage, Violeta L. Marin, V. Marin, 2006, Biochemistry.

Self‐assembled supramolecular microgels: Fractal structure and aggregation mechanism

B. Armitage, Z. Gu, G. Patterson, 2003 .

Reversible association of PNA-terminated poly(2-hydroxyethyl acrylate) from ATRP

B. Armitage, G. Berry, Y. Wang, 2005 .

Evidence for synaptotagmin as an inhibitory clamp on synaptic vesicle release in Aplysia neurons.

E. Kandel, K. Martin, S. Siegelbaum, 1995, Proceedings of the National Academy of Sciences of the United States of America.

Cyanine Dye–DNA Interactions: Intercalation, Groove Binding, and Aggregation

B. Armitage, 2005 .

Targeting a Potential G-Quadruplex Forming Sequence Found in the West Nile Virus Genome by Complementary Gamma-Peptide Nucleic Acid Oligomers.

B. Armitage, S. Sarkar, 2021, ACS infectious diseases.

Targeting G-Quadruplexes with PNA Oligomers.

B. Armitage, 2019, Methods in molecular biology.

γPNA FRET Pair Miniprobes for Quantitative Fluorescent In Situ Hybridization to Telomeric DNA in Cells and Tissue

Jian Yu, Jian Yu, B. Armitage, 2017, Molecules.

Cooperative hybridization of γPNA miniprobes to a repeating sequence motif and application to telomere analysis.

D. Ly, B. Armitage, P. Opresko, 2014, Organic & biomolecular chemistry.

Formation and characterization of PNA-containing heteroquadruplexes.

B. Armitage, 2014, Methods in molecular biology.

Photocleavage of Nucleic Acids.

B. Armitage, 1998, Chemical reviews.

Photocleavage of Nucleic Acids.

B. Armitage, 1998, Chemical reviews.

Peptide nucleic acid-anthraquinone conjugates: strand invasion and photoinduced cleavage of duplex DNA.

B. Armitage, T. Koch, H. Orum, 1997, Nucleic acids research.

Heroin inhalation and progressive spongiform leukoencephalopathy.

A. Kriegstein, B. Armitage, P. Kim, 1997, The New England journal of medicine.

Efficient Cytoplasmic Delivery of Antisense Probes Assisted by Cyclized‐Peptide‐Mediated Photoinduced Endosomal Escape

M. Bruchez, Xiaohong Tan, B. Armitage, 2019, Chembiochem : a European journal of chemical biology.

Analysis of PNA hybridization by surface plasmon resonance.

B. Armitage, 2014, Methods in molecular biology.

A single-chain-variable-fragment fluorescence biosensor activates fluorogens from dissimilar chemical families.

J. Jarvik, E. Gallo, B. Armitage, 2014, Protein and peptide letters.

Twisted cyanines: a non-planar fluorogenic dye with superior photostability and its use in a protein-based fluoromodule.

A. Waggoner, B. Armitage, Alan S Waggoner, 2013, Journal of the American Chemical Society.

A rainbow of fluoromodules: a promiscuous scFv protein binds to and activates a diverse set of fluorogenic cyanine dyes.

P. Berget, J. Burnette, B. Armitage, 2008, Journal of the American Chemical Society.

Strand Invasion of DNA Quadruplexes by PNA: Comparison of Homologous and Complementary Hybridization

D. Ly, W. Wilson, B. Armitage, 2013, Chembiochem : a European journal of chemical biology.

Investigation of DNA Binding Modes for a Symmetrical Cyanine Dye Trication: Effect of DNA Sequence and Structure

Carl F. Venezia, C. F. Venezia, B. Armitage, 2001, Journal of biomolecular structure & dynamics.

Long Range Electron Transfer in PNA/DNA Duplexes

B. Armitage, H. Ørum, H. Hansen, 1999 .

Substituent effects on the assembly of helical cyanine dye aggregates in the minor groove of a DNA template.

D. Yaron, B. Armitage, Babu Rao Renikuntla, 2011, Langmuir : the ACS journal of surfaces and colloids.

1H NMR and optical spectroscopic investigation of the sequence-dependent dimerization of a symmetrical cyanine dye in the DNA minor groove.

R. Gil, B. Armitage, Kristen C Hannah, 2005, Biochemistry.

DNA‐Templated Assembly of Helical Cyanine Dye Aggregates: A Supramolecular Chain Polymeriaztion

B. Armitage, Kristen C Hannah, 2005 .

Biopolymers, liquid crystalline polymers, phase emulsion

D. Sherrington, N. Cameron, B. Armitage, 1996 .

Noncovalent binding and fluorogenic response of cyanine dyes to DNA homoquadruplex and PNA-DNA heteroquadruplex structures

B. Armitage, H. S. Mohammed, Junriz O Delos Santos, 2011, Artificial DNA, PNA & XNA.

Peptide nucleic acid (PNA)/DNA hybrid duplexes: intercalation by an internally linked anthraquinone.

B. Armitage, T. Koch, H. Orum, 1998, Nucleic acids research.

Fluorescent PNA probes as hybridization labels for biological RNA.

Liping Yu, Kelly L. Robertson, B. Armitage, 2006, Biochemistry.

Selective photocleavage of DNA by anthraquinone derivatives: targeting the single-strand region of hairpin structures.

B. Armitage, P. Henderson, G. Schuster, 1998, Biochemistry.

10 Bioinspired organic chemistry

B. Armitage, 2002 .

Experimental and computational investigation of unsymmetrical cyanine dyes: understanding torsionally responsive fluorogenic dyes.

David Yaron, D. Yaron, B. Armitage, 2007, Journal of the American Chemical Society.

Improved photostability and fluorescence properties through polyfluorination of a cyanine dye.

Joby Eldo, A. Waggoner, B. Armitage, 2004, Organic letters.

An Enlightening Structure-Function Relationship

P. Berget, B. Armitage, 2008, Science.

Synthesis and characterization of conformationally preorganized, (R)-diethylene glycol-containing γ-peptide nucleic acids with superior hybridization properties and water solubility.

D. Ly, B. Armitage, R. Bahal, 2011, The Journal of organic chemistry.

Spectral Properties of Fluorogenic Thiophene‐derived Triarylmethane Dyes

A. Waggoner, B. Armitage, Kenneth F. Stensrud, 2018, Photochemistry and photobiology.

Bright Fluorescent Nanotags from Bottlebrush Polymers with DNA-Tipped Bristles

K. Matyjaszewski, B. Armitage, Subha R. Das, 2015, ACS central science.

DNA-templated assembly of helical cyanine dye aggregates: a supramolecular chain polymerization.

B. Armitage, Bruce A Armitage, Kristen C Hannah, 2004, Accounts of chemical research.

Spontaneous Assembly of Helical Cyanine Dye Aggregates on DNA Nanotemplates

Miaomiao Wang, J. Seifert, B. Armitage, 1999 .

Cyanine Dye–Nucleic Acid Interactions

B. Armitage, Bruce A. Armitage, 2008, Heterocyclic Polymethine Dyes.

Selective stabilization of triplex DNA by anthraquinone sulfonamide derivatives.

B. Armitage, G. Schuster, Y. Kan, 1997, Biochemistry.

Anthraquinone Photonucleases: A Surprising Role for Chloride in the Sequence‐Neutral Cleavage of DNA and the Footprinting of Minor Groove‐Bound Ligands

B. Armitage, G. Schuster, 1997, Photochemistry and photobiology.

Polymerization and domain formation in lipid assemblies

B. Armitage, H. Lamparski, D. Bennett, 1996 .

Cationic Anthraquinone Derivatives as Catalytic DNA Photonucleases: Mechanisms for DNA Damage and Quinone Recycling

C. Devadoss, B. Armitage, G. Schuster, 1994 .

Strand Invasion of Mixed-Sequence B-DNA by Acridine-Linked, γ-Peptide Nucleic Acid (γ-PNA)

D. Ly, B. Armitage, Subhadeep Roy, 2007 .

Hybridization of PNA to structured DNA targets: quadruplex invasion and the overhang effect.

B. Armitage, B. Datta, 2001, Journal of the American Chemical Society.

Peptide nucleic acid-DNA duplexes: long range hole migration from an internally linked anthraquinone.

B. Armitage, T. Koch, H. Orum, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Modular Evolution of DNA-Binding Preference of a Tbrain Transcription Factor Provides a Mechanism for Modifying Gene Regulatory Networks

Martha L. Bulyk, Veronica F. Hinman, M. Bulyk, 2014, Molecular biology and evolution.

Homologous PNA Hybridization to Noncanonical DNA G-Quadruplexes.

J. Woolford, B. Armitage, Karen A. Kormuth, 2016, Biochemistry.

Assembly and Characterization of RNA/DNA Hetero-G-Quadruplexes.

B. Armitage, April S Berlyoung, 2020, Biochemistry.

Kinetic Discrimination in Recognition of Dna Quadruplex Targets by Guanine-rich Heteroquadruplex-forming Pna Probes. Kinetic Discrimination in Recognition of Dna Quadruplex Targets by Guanine-rich Heteroquadruplex-forming Pna Probes Nih Public Access Supplementary Material Refer to Web Version on Pu

D. Ly, W. Wilson, B. Armitage, 2022 .

Loop and backbone modifications of peptide nucleic acid improve g-quadruplex binding selectivity.

D. Ly, W. Wilson, B. Armitage, 2009, Journal of the American Chemical Society.

High-affinity homologous peptide nucleic acid probes for targeting a quadruplex-forming sequence from a MYC promoter element.

D. Ly, W. Wilson, B. Armitage, 2007, Biochemistry.

Formation of a PNA2-DNA2 hybrid quadruplex.

B. Armitage, C. Schmitt, B. Datta, 2003, Journal of the American Chemical Society.

Cubic liquid-crystalline nanoparticles.

S. Marder, B. Armitage, Daehee Yang, 2004, Angewandte Chemie.

Polymerization of Preformed Self-Organized Assemblies

Youn-Sik Lee, B. Armitage, Warunee Srisiri, 1998 .

Cubic Liquid‐Crystalline Nanoparticles

Seth R. Marder, Da Yang, D. Yang, 2004 .

Recognition of ATGA sequences by the unfused aromatic dication DB293 forming stacked dimers in the DNA minor groove.

W D Wilson, C. Bailly, W. Wilson, 2001, Biochemistry.

Recent advances in the development of peptide nucleic acid as a gene-targeted drug

B. Armitage, Subhadeep Roy, Violeta L. Marin, 2004, Expert opinion on biological therapy.

The preconcentration of various trace elements in seawater by solvent extraction and the ring oven

B. Armitage, H. Zeitlin, Harry Zeitlin, 1971 .

Probing of miniPEGγ-PNA-DNA Hybrid Duplex Stability with AFM Force Spectroscopy.

Y. Lyubchenko, B. Armitage, S. Dutta, 2016, Biochemistry.

Leukoencephalopathy and raised brain lactate from heroin vapor inhalation (“chasing the dragon”)

A. Kriegstein, W. S. Millar, D. Shungu, 1999, Neurology.

A variable light domain fluorogen activating protein homodimerizes to activate dimethylindole red.

I. Wilson, A. Waggoner, P. Berget, 2012, Biochemistry.

The rule of four.

B. Armitage, 2007, Nature chemical biology.

Electron-Transfer Reactions in the Marcus Inverted Region. Charge Recombination versus Charge Shift Reactions

I. Gould, S. Farid, J. Moser, 1989 .

Factors controlling the efficiencies of photoinduced electron-transfer reactions

I. Gould, S. Farid, J. Moser, 1995 .

Electron-Transfer Reactions in the Marcus Inverted Region. Charge Recombination versus Charge Shift Reactions.

I. Gould, S. Farid, J. Moser, 1989 .

Peptide Nucleic Acids (PNAs)

D. Ly, B. Armitage, J. W. Schneider, 2008 .

Enhanced Hybridization Selectivity Using Structured GammaPNA Probes

Taylor D. Canady, M. Bruchez, C. Telmer, 2020, Molecules.

In Vitro Reversible Translation Control Using γPNA Probes.

Taylor D. Canady, M. Bruchez, C. Telmer, 2015, Journal of the American Chemical Society.

Effect of secondary structure on the thermodynamics and kinetics of PNA hybridization to DNA hairpins.

P. Nielsen, J. Seifert, B. Armitage, 2001, Journal of the American Chemical Society.

Blue fluorescent dye-protein complexes based on fluorogenic cyanine dyes and single chain antibody fragments.

A. Waggoner, P. Berget, Kelly L. Robertson, 2011, Organic & biomolecular chemistry.

Enhanced photostability of genetically encodable fluoromodules based on fluorogenic cyanine dyes and a promiscuous protein partner.

F. Lanni, P. Berget, B. Armitage, 2009, Journal of the American Chemical Society.

The impact of nucleic acid secondary structure on PNA hybridization.

B. Armitage, 2003, Drug discovery today.

Accessibility of Densely Localized DNA on Soft Polymer Nanoparticles.

K. Matyjaszewski, B. Armitage, Subha R. Das, 2018, Langmuir : the ACS journal of surfaces and colloids.

Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules.

A. Waggoner, Kelly L. Robertson, Tudor P Constantin, 2008, Organic letters.

Fluorescent DNA nanotags featuring covalently attached intercalating dyes: synthesis, antibody conjugation, and intracellular imaging.

T. Carell, B. Armitage, L. Peteanu, 2011, Bioconjugate chemistry.

Three-Dimensional Structure and Reactivity of a Photochemical Cleavage Agent Bound to DNA

L. Williams, B. Armitage, G. Schuster, 1998 .

6 Bioinspired organic chemistry

B. Armitage, 2022 .

Helical Aggregation of Cyanine Dyes on DNA Templates: Effect of Dye Structure on Formation of Homo- and Heteroaggregates

B. Armitage, R. E. Connor, E. A. Litzinger, 2002 .

Enhancement of energy transfer on bilayer surfaces via polymerization-induced domain formation

B. Armitage, P. Klekotka, E. Oblinger, 1993 .

A recoverable enzymatic microgel based on biomolecular recognition.

B. Armitage, Z. Gu, G. Patterson, 2004, Journal of the American Chemical Society.

Label-free molecular beacons for biomolecular detection.

Yi Wang, Xiaohong Tan, M. Bruchez, 2014, Analytical chemistry.

Detection of Single Nucleotide Mismatches via Fluorescent Polymer Superquenching

Duncan W. McBranch, David G. Whitten, D. Mcbranch, 2003 .

Proteins functioning in synaptic transmission at the sensory to motor synapse of Aplysia

E. Kandel, K. Martin, D. Bartsch, 1995, Neuropharmacology.

Refined multivalent display of bacterial spore-binding peptides.

B. Armitage, Yehuda Creeger, Sabrina Lusvarghi, 2009, Organic & biomolecular chemistry.

Rapid, multiplexed detection of the let‐7 miRNA family using γPNA amphiphiles in micelle‐tagging electrophoresis

Johnathan M Goldman, B. Armitage, J. W. Schneider, 2021, Biopolymers.

Effect of PNA backbone modifications on cyanine dye binding to PNA-DNA duplexes investigated by optical spectroscopy and molecular dynamics simulations.

B. Armitage, M. Madrid, Rojendra Singh, 2005, Journal of the American Chemical Society.

Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif

J. Piccirilli, M. Bruchez, A. Waggoner, 2018, Nature Communications.

Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif

J. Piccirilli, M. Bruchez, A. Waggoner, 2018, Nature Communications.

Spectral fine tuning of cyanine dyes: electron donor—acceptor substituted analogues of thiazole orange

David Yaron, Simon C Watkins, D. Yaron, 2015, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

Bichromophoric dyes for wavelength shifting of dye-protein fluoromodules.

A. Waggoner, B. Armitage, B. Schmidt, 2015, Organic & biomolecular chemistry.

Imaging of RNA in live cells.

B. Armitage, 2011, Current opinion in chemical biology.

Synthesis and characterization of thermoreversible biopolymer microgels based on hydrogen bonded nucleobase pairing.

B. Armitage, Z. Gu, L. Hsu, 2003, Journal of the American Chemical Society.

Closing the Loop: Constraining TAT Peptide by γPNA Hairpin for Enhanced Cellular Delivery of Biomolecules.

M. Bruchez, Xiaohong Tan, B. Armitage, 2018, Bioconjugate chemistry.

Vectorial photoinduced electron transfer between phospholipid membrane-bound donors and acceptors

B. Armitage, D. O'BRIEN, 1992 .

Probing of PNA-DNA Hybrid Duplex Stability with AFM Force Spectroscopy

Y. Lyubchenko, B. Armitage, S. Dutta, 2015 .

Aptamers Act as Activators for the Thrombin Mediated‐Hydrolysis of Peptide Substrates

M. Bruchez, C. Telmer, Xiaohong Tan, 2014, Chembiochem : a European journal of chemical biology.

Hairpin-forming peptide nucleic acid oligomers.

B. Armitage, T. Koch, H. Orum, 1998, Biochemistry.

Molecular Recognition of PNA-Containing Hybrids: Spontaneous Assembly of Helical Cyanine Dye Aggregates on PNA Templates

B. Armitage, Jeffrey O. Smith, Bruce A. Armitage, 1999 .

A structural model for cyanine dyes templated into the minor groove of DNA

David Yaron, Miaomiao Wang, Brian M. Frezza, 2006 .

Recent advances in the development of peptide nucleic acid as a gene-targeted drug

B. Armitage, Subhadeep Roy, Violeta L. Marin, 2004, Expert opinion on biological therapy.

Quadruplex formation by a guanine-rich PNA oligomer.

B. Armitage, Subhadeep Roy, M. Bier, 2005, Journal of the American Chemical Society.

RNA G-Quadruplex Invasion and Translation Inhibition by Antisense γ-Peptide Nucleic Acid Oligomers.

M. Bruchez, C. Telmer, B. Armitage, 2016, Biochemistry.