P. Korhonen

Bill C. H. Chang, Pasi K. Korhonen, P. Sternberg, 2017, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

High-quality Schistosoma haematobium genome achieved by single-molecule and long-range sequencing

Pasi K. Korhonen, D. Rollinson, Kok-Gan Chan, 2019, GigaScience.

Clonorchis sinensis and Clonorchiasis: The Relevance of Exploring Genetic Variation.

Pasi K. Korhonen, N. Young, R. Gasser, 2018, Advances in parasitology.

Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium

Pasi K. Korhonen, J. Stoye, D. Rollinson, 2019, PLoS pathogens.

Whipworm kinomes reflect a unique biology and adaptation to the host animal.

Bill C. H. Chang, Pasi K. Korhonen, P. Sternberg, 2017, International journal for parasitology.

Comparative genome analysis indicates rapid evolution of pathogenicity genes in Colletotrichum tanaceti

Jason B. Scott, Pasi K. Korhonen, N. Young, 2019, bioRxiv.

Comparative genome analysis indicates high evolutionary potential of pathogenicity genes in Colletotrichum tanaceti

Jason B. Scott, Pasi K. Korhonen, N. Young, 2019, PloS one.

Predicting gene essentiality in Caenorhabditis elegans by feature engineering and machine-learning

Pasi K. Korhonen, P. Sternberg, N. Young, 2020, Computational and structural biotechnology journal.

Toward integrative 'omics of the barber's pole worm and related parasitic nematodes.

Pasi K. Korhonen, N. Young, R. Gasser, 2020, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

High throughput LC-MS/MS-based proteomic analysis of excretory-secretory products from short-term in vitro culture of Haemonchus contortus.

Pasi K. Korhonen, N. Young, R. Gasser, 2019, Journal of proteomics.

Exploring molecular variation in Schistosoma japonicum in China

Pasi K. Korhonen, D. Rollinson, Kok-Gan Chan, 2015, Scientific Reports.

Pipeline for the identification and classification of ion channels in parasitic flatworms

Pasi K. Korhonen, P. Tan, N. Young, 2016, Parasites & Vectors.

Improved genomic resources and new bioinformatic workflow for the carcinogenic parasite Clonorchis sinensis: Biotechnological implications.

Pasi K. Korhonen, N. Young, R. Gasser, 2018, Biotechnology advances.

The redlegged earth mite draft genome provides new insights into pesticide resistance evolution and demography in its invasive Australian range

Joshua A. Thia, Pasi K. Korhonen, N. Young, 2022, bioRxiv.

Evidence that Transcriptional Alterations in Sarcoptes scabiei Are under Tight Post-Transcriptional (microRNA) Control

Pasi K. Korhonen, N. Young, R. Gasser, 2022, International journal of molecular sciences.

Molecular alterations during larval development of Haemonchus contortus in vitro are under tight post-transcriptional control.

Pasi K. Korhonen, Andreas J. Stroehlein, N. Young, 2018, International journal for parasitology.

“Escalibur”—A practical pipeline for the de novo analysis of nucleotide variation in nonmodel eukaryotes

Bill C. H. Chang, Pasi K. Korhonen, N. Faux, 2022, Molecular Ecology Resources.

Long-read sequencing reveals a 4.4 kb tandem repeat region in the mitogenome of Echinococcus granulosus (sensu stricto) genotype G1

Pasi K. Korhonen, Junhua Li, N. Young, 2019, Parasites & Vectors.

Use of a bioinformatic-assisted primer design strategy to establish a new nested PCR-based method for Cryptosporidium

Pasi K. Korhonen, N. Young, R. Gasser, 2017, Parasites & Vectors.

The complement of family M1 aminopeptidases of Haemonchus contortus--Biotechnological implications.

Pasi K. Korhonen, N. Young, A. Hofmann, 2016, Biotechnology advances.

OGEE v3: Online GEne Essentiality database with increased coverage of organisms and human cell lines

Xing-Ming Zhao, Peer Bork, Robin B. Gasser, 2020, Nucleic Acids Res..

Insights into the immuno-molecular biology of Angiostrongylus vasorum through transcriptomics--prospects for new interventions.

Pasi K. Korhonen, P. Sternberg, N. Young, 2013, Biotechnology advances.

Molecular diagnosis of scabies using a novel probe-based polymerase chain reaction assay targeting high-copy number repetitive sequences in the Sarcoptes scabiei genome

J. McCarthy, A. Papenfuss, R. Gasser, 2021, PLoS neglected tropical diseases.

Harnessing the Toxocara Genome to Underpin Toxocariasis Research and New Interventions.

Pasi K. Korhonen, N. Young, R. Gasser, 2016, Advances in parasitology.

The Opisthorchis viverrini genome provides insights into life in the bile duct

Bin Tean Teh, Paul W. Sternberg, Niranjan Nagarajan, 2014, Nature Communications.

High-Throughput Phenotypic Assay to Screen for Anthelmintic Activity on Haemonchus contortus

Bill C. H. Chang, Pasi K. Korhonen, R. Gasser, 2021, Pharmaceuticals.

Divergent Transcriptional Responses to Physiological and Xenobiotic Stress in Giardia duodenalis

M. McConville, A. Jex, R. Gasser, 2016, Antimicrobial Agents and Chemotherapy.

The barber's pole worm CAP protein superfamily--A basis for fundamental discovery and biotechnology advances.

Ross S Hall, Pasi K. Korhonen, P. Sternberg, 2015, Biotechnology advances.

Mitochondrial genomes of two Babesia taxa from sheep in China as a foundation for population genetic and epidemiological investigations.

Pasi K. Korhonen, N. Young, R. Gasser, 2017, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Harnessing model organism genomics to underpin the machine learning-based prediction of essential genes in eukaryotes - Biotechnological implications.

Pasi K. Korhonen, N. Young, A. Hofmann, 2021, Biotechnology advances.

Hc-daf-2 encodes an insulin-like receptor kinase in the barber's pole worm, Haemonchus contortus, and restores partial dauer regulation.

Pasi K. Korhonen, R. Gasser, P. Korhonen, 2014, International journal for parasitology.

Mitochondrial genome of Bulinus truncatus (Gastropoda: Lymnaeoidea): Implications for snail systematics and schistosome epidemiology

Pasi K. Korhonen, D. Rollinson, Andreas J. Stroehlein, 2021, Current research in parasitology & vector-borne diseases.

Mitochondrial genomes of Trichinella species and genotypes – a basis for diagnosis, and systematic and epidemiological explorations.

Bill C. H. Chang, Pasi K. Korhonen, P. Sternberg, 2014, International journal for parasitology.

Nanopore Sequencing Resolves Elusive Long Tandem-Repeat Regions in Mitochondrial Genomes

Bill C. H. Chang, Pasi K. Korhonen, D. Rollinson, 2021, International journal of molecular sciences.

Bioinformatic exploration of RIO protein kinases of parasitic and free-living nematodes.

Pasi K. Korhonen, P. Sternberg, N. Young, 2014, International journal for parasitology.

The Battle Against Flystrike - Past Research and New Prospects Through Genomics.

Pasi K. Korhonen, P. Batterham, N. Young, 2017, Advances in parasitology.

Elucidating the molecular and developmental biology of parasitic nematodes: Moving to a multiomics paradigm.

Pasi K. Korhonen, P. Sternberg, N. Young, 2020, Advances in parasitology.

MicroRNAs of Toxocara canis and their predicted functional roles

Pasi K. Korhonen, N. Young, R. Gasser, 2016, Parasites & Vectors.

Exploring the role of two interacting phosphoinositide 3-kinases of Haemonchus contortus

Pasi K. Korhonen, R. Gasser, P. Korhonen, 2014, Parasites & Vectors.

A TGF-β type I receptor-like molecule with a key functional role in Haemonchus contortus development.

Pasi K. Korhonen, R. Gasser, P. Korhonen, 2018, International journal for parasitology.

Comparative transcriptomic analyses of male and female adult Toxocara canis.

Pasi K. Korhonen, Q. Xia, R. Gasser, 2017, Gene.

Time-Dependent Transcriptional Changes in Axenic Giardia duodenalis Trophozoites

M. McConville, N. Young, A. Jex, 2015, PLoS neglected tropical diseases.

Chromosome-level genome of Schistosoma haematobium underpins genome-wide explorations of molecular variation

Bill C. H. Chang, Pasi K. Korhonen, Huanming Yang, 2022, PLoS pathogens.

Genetic blueprint of the zoonotic pathogen Toxocara canis

Ross S Hall, Pasi K. Korhonen, X. Fang, 2015, Nature Communications.

Comparative bioinformatic analysis suggests that specific dauer-like signalling pathway components regulate Toxocara canis development and migration in the mammalian host

Bill C. H. Chang, Andreas J. Stroehlein, N. Young, 2019, Parasites & Vectors.

Phylogenomic and biogeographic reconstruction of the Trichinella complex

Bill C. H. Chang, Andreas Hofmann, Pasi K Korhonen, 2016, Nature Communications.

Analyses of Compact Trichinella Kinomes Reveal a MOS-Like Protein Kinase with a Unique N-Terminal Domain

Bill C. H. Chang, P. Sternberg, Andreas J. Stroehlein, 2016, G3: Genes, Genomes, Genetics.

High-quality reference genome for Clonorchis sinensis.

Bill C. H. Chang, Erez Lieberman Aiden, Pasi K. Korhonen, 2021, Genomics.

Dipylidium caninum draft genome - a new resource for comparative genomic and genetic explorations of flatworms.

Bill C. H. Chang, Pasi K. Korhonen, N. Young, 2021, Genomics.

Somatic proteome of Haemonchus contortus.

Tao Wang, Ching-Seng Ang, Shuai Nie, 2019, International journal for parasitology.

Dauer signalling pathway model for Haemonchus contortus

Pasi K. Korhonen, Andreas J. Stroehlein, N. Young, 2019, Parasites & Vectors.

Comparative bioinformatic analysis suggests that specific dauer-like signalling pathway components regulate Toxocara canis development and migration in the mammalian host

Bill C. H. Chang, Pasi K. Korhonen, Andreas J. Stroehlein, 2019, Parasites & Vectors.

The developmental lipidome of Haemonchus contortus.

Pasi K. Korhonen, R. Gasser, P. Korhonen, 2018, International journal for parasitology.

MicroRNAs of Toxocara canis and their predicted functional roles

Pasi K. Korhonen, N. Young, R. Gasser, 2016, Parasites & Vectors.

CAP protein superfamily members in Toxocara canis

Pasi K. Korhonen, P. Sternberg, Andreas J. Stroehlein, 2016, Parasites & Vectors.

CAP protein superfamily members in

Pasi K. Korhonen, P. Sternberg, Andreas J. Stroehlein, 2016 .

Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions

Pasi K. Korhonen, R. Gibbs, D. Muzny, 2015, Nature Communications.

Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data

Pasi K Korhonen, Ross S Hall, Neil D Young, 2019, GigaScience.

Trehalose 6‐phosphate phosphatases of Pseudomonas aeruginosa

Pasi K. Korhonen, Jeong-Sun Kim, A. Hofmann, 2018, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

First record of a tandem-repeat region within the mitochondrial genome of Clonorchis sinensis using a long-read sequencing approach

Pasi K. Korhonen, Andreas J. Stroehlein, N. Young, 2020, PLoS neglected tropical diseases.

Identification of G protein-coupled receptors in Schistosoma haematobium and S. mansoni by comparative genomics

N. Young, R. Gasser, P. Korhonen, 2014, Parasites & Vectors.

The Haemonchus contortus kinome - a resource for fundamental molecular investigations and drug discovery

Pasi K. Korhonen, P. Sternberg, Andreas J. Stroehlein, 2015, Parasites & Vectors.

Mitochondrial genomic comparison of Clonorchis sinensis from South Korea with other isolates of this species.

Pasi K. Korhonen, P. Tan, N. Young, 2017, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Nuclear genome of Bulinus truncatus, an intermediate host of the carcinogenic human blood fluke Schistosoma haematobium

Pasi K. Korhonen, D. Rollinson, Andreas J. Stroehlein, 2022, Nature Communications.

Nuclear genome of Bulinus truncatus, an intermediate host of the carcinogenic human blood fluke Schistosoma haematobium

Pasi K. Korhonen, D. Rollinson, Andreas J. Stroehlein, 2022, Nature communications.

Gene content evolution in the arthropods

Daniel B. Sloan, Monica F. Poelchau, Pasi K. Korhonen, 2018, bioRxiv.

Bulinus truncatus transcriptome – a resource to enable molecular studies of snail and schistosome biology

Pasi K. Korhonen, D. Rollinson, Andreas J. Stroehlein, 2021, Current research in parasitology & vector-borne diseases.

Molecular evidence for distinct modes of nutrient acquisition between visceral and neurotropic schistosomes of birds

Pasi K. Korhonen, N. Young, R. Gasser, 2019, Scientific Reports.

Pipeline for the identification and classification of ion channels in parasitic flatworms

P. Tan, N. Young, R. Gasser, 2016, Parasites & Vectors.

Comparative Transcriptomic Exploration Reveals Unique Molecular Adaptations of Neuropathogenic Trichobilharzia to Invade and Parasitize Its Avian Definitive Host

Pasi K. Korhonen, P. Tan, N. Young, 2016, PLoS neglected tropical diseases.

Identification of G protein-coupled receptors in Schistosoma haematobium and S. mansoni by comparative genomics

Andrew Lonie, Pasi K Korhonen, Ross S Hall, 2014, Parasites & Vectors.

Thermal proteome profiling reveals Haemonchus orphan protein HCO_011565 as a target of the nematocidal small molecule UMW-868

Bill C. H. Chang, Pasi K. Korhonen, J. Keiser, 2022, Frontiers in Pharmacology.

The developmental phosphoproteome of Haemonchus contortus.

Bill C. H. Chang, Pasi K. Korhonen, Andreas J. Stroehlein, 2019, Journal of proteomics.

Dafachronic acid promotes larval development in Haemonchus contortus by modulating dauer signalling and lipid metabolism

Pasi K. Korhonen, N. Young, R. Gasser, 2019, PLoS pathogens.

Complement of H11 isoforms (M1 aminopeptidase family) of Haemonchus contortus

Pasi K. Korhonen, N. Young, A. Hofmann, 2017 .

Molecular characterization of the Haemonchus contortus phosphoinositide-dependent protein kinase-1 gene (Hc-pdk-1)

Pasi K. Korhonen, R. Gasser, P. Korhonen, 2016, Parasites & Vectors.

Low cost whole-organism screening of compounds for anthelmintic activity.

Pasi K. Korhonen, J. Baell, A. Jex, 2015, International journal for parasitology.

Analysis of the transcriptome of adult Dictyocaulus filaria and comparison with Dictyocaulus viviparus, with a focus on molecules involved in host-parasite interactions.

Pasi K. Korhonen, P. Sternberg, M. Mitreva, 2014, International journal for parasitology.

The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus

B. Williams, P. Sternberg, A. Loukas, 2013, Genome Biology.

Proteomic analysis of Sarcoptes scabiei reveals that proteins differentially expressed between eggs and female adult stages are involved predominantly in genetic information processing, metabolism and/or host-parasite interactions

Pasi K. Korhonen, N. Young, R. Gasser, 2022, PLoS neglected tropical diseases.

Chromosome-scale Echinococcus granulosus (genotype G1) genome reveals the Eg95 gene family and conservation of the EG95-vaccine molecule

Bill C. H. Chang, Pasi K. Korhonen, Junhua Li, 2022, Communications Biology.

An RNA Interference Tool to Silence Genes in Sarcoptes scabiei Eggs

R. Gasser, P. Korhonen, D. D. Fernando, 2022, International journal of molecular sciences.

Gene content evolution in the arthropods

Daniel B. Sloan, Monica F. Poelchau, Pasi K. Korhonen, 2018, Genome Biology.

Cross-Predicting Essential Genes between Two Model Eukaryotic Species Using Machine Learning

Pasi K. Korhonen, N. Young, P. Korhonen, 2021, International journal of molecular sciences.

Best practice data life cycle approaches for the life sciences

Ute Roessner, Maria Victoria Schneider, Suzanna E Lewis, 2017, bioRxiv.

The apicoplast genomes of two taxonomic units of Babesia from sheep.

N. Young, R. Gasser, P. Korhonen, 2017, Veterinary parasitology.

Marked mitochondrial genetic variation in individuals and populations of the carcinogenic liver fluke Clonorchis sinensis

Ross S Hall, Pasi K. Korhonen, J. L. Fink, 2020, PLoS neglected tropical diseases.

Best practice data life cycle approaches for the life

Ute Roessner, Maria Victoria Schneider, Suzanna E Lewis, 2019 .

Identification of G protein-coupled receptors in Schistosoma haematobium and S. mansoni by comparative genomics

Pasi K. Korhonen, N. Young, R. Gasser, 2014, Parasites & Vectors.