I. Small

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Fluorescent protein tagging as a tool to define the subcellular distribution of proteins in plants

Sandra K. Tanz, A. Millar, S. Tanz, 2013, Front. Plant Sci..

Potential dual targeting of an Arabidopsis archaebacterial‐like histidyl‐tRNA synthetase to mitochondria and chloroplasts 1

K. Akashi, I. Small, O. Grandjean, 1998, FEBS letters.

RNAi for revealing and engineering plant gene functions.

I. Small, 2007, Current opinion in biotechnology.

The TATA motif, the CAA motif and the poly(T) transcription termination motif are all important for transcription re-initiation on plant tRNA genes.

N. Choisne, M. Sugiura, I. Small, 2000, The Plant journal : for cell and molecular biology.

The same Arabidopsis gene encodes both cytosolic and mitochondrial alanyl-tRNA synthetases.

I. Small, H. Mireau, D. Lancelin, 1996, The Plant cell.

Dual targeting to mitochondria and chloroplasts.

I. Small, N. Peeters, Nemo Peeters, 2001, Biochimica et biophysica acta.

Predotar: A tool for rapidly screening proteomes for N‐terminal targeting sequences

F. Legeai, I. Small, N. Peeters, 2004, Proteomics.

Recent surprises in protein targeting to mitochondria and plastids.

A. Millar, J. Whelan, I. Small, 2006, Current opinion in plant biology.

Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

I. Small, C. Schmitz-Linneweber, Christian Schmitz-Linneweber, 2008, Trends in plant science.

Two birds with one stone: genes that encode products targeted to two or more compartments

K. Akashi, I. Small, H. Mireau, 1998 .

Pentatricopeptide repeat proteins in plants.

A. Barkan, I. Small, 2014, Annual review of plant biology.

Shifting the limits in wheat research and breeding using a fully annotated reference genome

Jonathan D. G. Jones, Karl G. Kugler, J. Rogers, 2018, Science.

Genome-Wide Analysis of mRNA Decay Rates and Their Determinants in Arabidopsis thaliana[W]

A. Millar, J. Whelan, I. Small, 2007, The Plant Cell Online.

The PPR motif - a TPR-related motif prevalent in plant organellar proteins.

I. Small, N. Peeters, 2000, Trends in biochemical sciences.

Fern genomes elucidate land plant evolution and cyanobacterial symbioses

Michael S. Barker, G. Wong, Steven Maere, 2018, Nature Plants.

European consortia building integrated resources for Arabidopsis functional genomics.

M. Kuiper, P. Hilson, I. Small, 2003, Current opinion in plant biology.

The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic

Ian Small, Valérie Cognat, Anne-Marie Duchêne, 2016, Nucleic acids research.

Chromosome-scale genome assembly provides insights into rye biology, evolution, and agronomic potential

J. Keilwagen, D. Swarbreck, J. Poland, 2019, bioRxiv.

Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes

Ian Small, Etienne Delannoy, Mark Brundrett, 2011, Molecular biology and evolution.

In silico methods for identifying organellar and suborganellar targeting peptides in Arabidopsis chloroplast proteins and for predicting the topology of membrane proteins.

Ian Small, S. Tanz, I. Small, 2011, Methods in molecular biology.

What can we do with 1000 plastid genomes?

Julian Tonti-Filippini, Ian Small, Julian Tonti-Filippini, 2017, The Plant journal : for cell and molecular biology.

Characterization of the nuclear gene encoding chloroplast ribosomal protein S13 from Arabidopsis thaliana

Raman Kumar, I. Small, M. Raynal, 1995, Current Genetics.

Plant cytosolic tRNA His possesses an exceptional C 54 in the canonical T Ψ C loop

M. Sugiura, I. Small, K. Akama, 1998 .

Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants.

Siu-Ming Yiu, Xun Xu, Charles S. Bond, 2016, The Plant journal : for cell and molecular biology.

Simulation of heterosis in a genome-scale metabolic network provides mechanistic explanations for increased biomass production rates in hybrid plants

M. Vacher, I. Small, 2019, npj Systems Biology and Applications.

Plant organellar RNA editing: what 30 years of research has revealed.

I. Small, Mareike Schallenberg-Rüdinger, H. Mireau, 2020, The Plant journal : for cell and molecular biology.

Is agriculture driving the diversification of the Bemisia tabaci species complex (Hemiptera: Sternorrhyncha: Aleyrodidae)?: Dating, diversification and biogeographic evidence revealed

C. Bell, I. Small, G. Evans, 2013, BMC Evolutionary Biology.

Targeted cleavage of nad6 mRNA induced by a modified pentatricopeptide repeat protein in plant mitochondria

I. Small, Catherine Colas des Francs‐Small, Lilian Vincis Pereira Sanglard, 2018, Communications Biology.

A PPR protein involved in regulating nuclear genes encoding mitochondrial proteins?

P. Giegé, I. Small, A. Gobert, 2011, Plant signaling & behavior.

Non-canonical Features of Pentatricopeptide Repeat Protein-Facilitated RNA Editing in Arabidopsis Chloroplasts

I. Small, Bernard Gutmann, Yueming Kelly Sun, 2019, bioRxiv.

Towards a plant model for enigmatic U-to-C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis.

I. Small, P. Szövényi, Mareike Schallenberg-Rüdinger, 2019, The New phytologist.

Protein Complexes Implicated in RNA Editing in Plant Organelles.

I. Small, Bernard Gutmann, Santana Royan, 2017, Molecular plant.

Arabidopsis Chloroplast RNA Binding Proteins CP31A and CP29A Associate with Large Transcript Pools and Confer Cold Stress Tolerance by Influencing Multiple Chloroplast RNA Processing Steps[W]

I. Small, M. Tillich, C. Schmitz-Linneweber, 2012, Plant Cell.

The design and structural characterization of a synthetic pentatricopeptide repeat protein.

C. Bond, A. Blythe, I. Small, 2015, Acta crystallographica. Section D, Biological crystallography.

The solution structure of the pentatricopeptide repeat protein PPR10 upon binding atpH RNA

A. Barkan, C. Bond, N. Cowieson, 2015, Nucleic acids research.

The expansion and diversification of pentatricopeptide repeat RNA editing factors in plants.

Julian Tonti-Filippini, C. Bond, M. Vacher, 2019, Molecular plant.

The Pentatricopeptide Repeat Protein OTP87 Is Essential for RNA Editing of nad7 and atp1 Transcripts in Arabidopsis Mitochondria*

Sandra K. Tanz, A. Brennicke, S. Tanz, 2011, The Journal of Biological Chemistry.

Plant biotechnology 2007: all three genomes make contributions to progress

I. Small, P. Maliga, 2007 .

Correction: The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene

Ian Small, I. Small, L. Boykin, 2015, PloS one.

Multiple wheat genomes reveal global variation in modern breeding

Bernardo J. Clavijo, Jorge Núñez Siri, Keith A. Gardner, 2020, Nature.

Current status of the multinational Arabidopsis community

G. Krouk, G. Coruzzi, G. Mendel, 2020, Plant direct.

Plastid signalling to the nucleus and beyond.

B. Pogson, I. Small, B. Förster, 2008, Trends in plant science.

Plastid tRNA genes trnC-GCA and trnN-GUU are essential for plant cell development.

R. Herrmann, I. Small, G. Wanner, 2007, The Plant journal : for cell and molecular biology.

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution

C. Bond, I. Small, Sota Fujii, 2011, Proceedings of the National Academy of Sciences.

Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit

Mark Stitt, Pierre Hilson, Peter Bühlmann, 2012, Molecular systems biology.

Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family

A. Millar, C. Hooper, S. Tanz, 2014, Front. Plant Sci..

The Pentatricopeptide Repeat Proteins TANG2 and ORGANELLE TRANSCRIPT PROCESSING439 Are Involved in the Splicing of the Multipartite nad5 Transcript Encoding a Subunit of Mitochondrial Complex I1[W][OPEN]

Sandra K. Tanz, M. Bevan, Caroline Smith, 2014, Plant Physiology.

Transactivation of a target gene using a suppressor tRNA in transgenic tobacco plants.

N. Choisne, I. Small, A. Martin-Canadell, 1997, The Plant journal : for cell and molecular biology.

A synthetic RNA editing factor edits its target site in chloroplasts and bacteria

C. Bond, I. Small, J. Schmidberger, 2020, Communications biology.

Evolutionary plasticity of restorer-of-fertility-like proteins in rice

James D. Stone, I. Small, J. Melonek, 2016, Scientific Reports.

mCSF1, a nucleus-encoded CRM protein required for the processing of many mitochondrial introns, is involved in the biogenesis of respiratory complexes I and IV in Arabidopsis.

I. Small, E. Belausov, Catherine Colas des Francs‐Small, 2013, The New phytologist.

Expression of Arabidopsis thaliana Mitochondrial Alanyl-tRNA Synthetase Is Not Sufficient to Trigger Mitochondrial Import of tRNAAla in Yeast*

L. Marechal-Drouard, I. Small, T. Fox, 2000, The Journal of Biological Chemistry.

The GENOMES UNCOUPLED1 protein has an ancient, highly conserved role but not in retrograde signalling

I. Small, Suvi Honkanen, 2022, The New phytologist.

Establishment of Photosynthesis through Chloroplast Development Is Controlled by Two Distinct Regulatory Phases1

Sandra K. Tanz, W. Schröder, A. Grönlund, 2017, Plant Physiology.

Mitochondrial Defects Confer Tolerance against Cellulose Deficiency

A. Millar, I. De Clercq, F. Van Breusegem, 2016, Plant Cell.

A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons

I. Small, A. Chateigner-Boutin, 2007, Nucleic acids research.

CRISPRi-based circuits for genetic computation in plants

Muhammad Adil Khan, R. Lister, D. Secco, 2022, bioRxiv.

Mitochondrial Defects Confer Tolerance against Cellulose Deficiency in Arabidopsis 1 2

A. Millar, P. Hilson, G. Mouille, 2016 .

Phage-Type RNA Polymerase RPOTmp Performs Gene-Specific Transcription in Mitochondria of Arabidopsis thaliana[W][OA]

A. Millar, J. Whelan, I. Small, 2009, The Plant Cell Online.

Remodeled respiration in ndusf4 with low phosphorylation efficiency suppresses Arabidopsis germination and growth and alters control of metabolism at night

Sandra K. Tanz, Adam J. Carroll, Adam J Carroll, 2009 .

AEF1/MPR25 is implicated in RNA editing of plastid atpF and mitochondrial nad5, and also promotes atpF splicing in Arabidopsis and rice.

Sandra K. Tanz, Peter Kindgren, S. Tanz, 2015, The Plant journal : for cell and molecular biology.

Knockdown of mitochondrial atp1 mRNA by a custom-designed 1 pentatricopeptide repeat protein alters F ATP synthase Running title: PPR-mediated knockdown of mitochondrial ATP 4 synthase

A. Millar, I. Small, E. Ströher, 2022 .

Mitochondrial genomes as living ‘fossils’

I. Small, 2013, BMC Biology.

Synthetic PPR proteins as tools for sequence-specific targeting of RNA.

C. Bond, I. Small, Rose McDowell, 2022, Methods.

MSP1 encodes an essential RNA-binding PPR factor required for nad1 maturation and complex I biogenesis in Arabidopsis mitochondria

Omri M. Finkel, I. Small, Hongliang Zhu, 2022, bioRxiv.

Sequence and transcript analysis of the Nco2.5 Ogura-specific fragment correlated with cytoplasmic male sterility in Brassica cybrids

I. Small, D. Lancelin, G. Pelletier, 1992, Molecular and General Genetics MGG.

Stoichiometric differences in DNA molecules containing the atpA gene suggest mechanisms for the generation of mitochondrial genome diversity in maize

I. Small, P. Isaac, C. Leaver, 1987, The EMBO journal.

Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia.

I. Small, L. Boykin, P. Nevill, 2016, Molecular phylogenetics and evolution.

The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene

Ian Small, I. Small, L. Boykin, 2015, PloS one.

Evolution of plant mitochondrial genomes via substoichiometric intermediates

I. Small, C. Leaver, R. Suffolk, 1989, Cell.

Mitochondrial Genome Diversity and Cytoplasmic Male Sterility in Higher Plants

J. Bailey-Serres, M. Hawkesford, I. Small, 1988 .

A comparison of cytoplasmic revertants to fertility from different CMS-S maize sources

E. Earle, I. Small, C. Leaver, 1988, Theoretical and Applied Genetics.

The Plant Mitochondrial Transfer RNA Population: A Mosaic of Species with Different Genetic Origins

L. Marechal-Drouard, I. Small, G. Pelletier, 1993 .

Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide‐repeat protein family

L. Cattolico, M. Caboche, I. Small, 2003 .

Albinism in Plants: A Major Bottleneck in Wide Hybridization, Androgenesis and Doubled Haploid Culture

K. Siddique, M. Kumari, I. Small, 2009 .

Organellar RNA editing

I. Small, A. Chateigner-Boutin, 2011, Wiley interdisciplinary reviews. RNA.

Editing and import: strategies for providing plant mitochondria with a complete set of functional transfer RNAs.

L. Marechal-Drouard, I. Small, A. Dietrich, 1996, Biochimie.

The multifarious roles of PPR proteins in plant mitochondrial gene expression

Ian Small, Claire Lurin, I. Small, 2007 .

Novel Proteins, Putative Membrane Transporters, and an Integrated Metabolic Network Are Revealed by Quantitative Proteomic Analysis of Arabidopsis Cell Culture Peroxisomes1[W][OA]

A. Millar, Steven M. L. Smith, I. Castleden, 2008, Plant Physiology.

Complex I Dysfunction Redirects Cellular and Mitochondrial Metabolism in Arabidopsis1[W][OA]

Adam J. Carroll, Adam J Carroll, Etienne Delannoy, 2008, Plant Physiology.

Mitochondrial Biogenesis and Function in Arabidopsis†

A. Millar, J. Whelan, I. Small, 2008, The arabidopsis book.

The evolution of RNA editing and pentatricopeptide repeat genes.

I. Small, Sota Fujii, 2011, The New phytologist.

Genome-Wide Analysis of Arabidopsis Pentatricopeptide Repeat Proteins Reveals Their Essential Role in Organelle Biogenesis

Frédérique Bitton, Ian Small, Marie-Laure Martin-Magniette, 2004, The Plant Cell Online.

In vivo import of a normal or mutagenized heterologous transfer RNA into the mitochondria of transgenic plants: towards novel ways of influencing mitochondrial gene expression?

L. Marechal-Drouard, I. Small, G. Pelletier, 1992, The EMBO journal.

Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles.

C. Bond, I. Small, W. Stanley, 2007, Biochemical Society transactions.

Proteomics, Bioinformatics and Genomics Applied to Plant Organelles

B. Szurek, I. Small, C. D. Francs-Small, 2004 .

A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins

Charles S. Bond, Ian Small, Alice Barkan, 2012, PLoS genetics.

SUBA: the Arabidopsis Subcellular Database

Joshua L. Heazlewood, Julian Tonti-Filippini, A. Harvey Millar, 2006, Nucleic Acids Res..

Striking differences in mitochondrial tRNA import between different plant species

L. Marechal-Drouard, I. Small, K. Akama, 1996, Molecular and General Genetics MGG.

Structure and expression of several bean (Phaseolus vulgaris) nuclear transfer RNA genes: relevance to the process of tRNA import into plant mitochondria

N. Choisne, L. Marechal-Drouard, I. Small, 1998, Plant Molecular Biology.

Characterization of some major identity elements in plant alanine and phenylalanine transfer RNAs

L. Marechal-Drouard, I. Small, G. Pelletier, 1994, Plant Molecular Biology.

Transfer RNA-mediated suppression of stop codons in protoplasts and transgenic plants

I. Small, G. Pelletier, V. Carneiro, 1993, Plant Molecular Biology.

The Import of Cytosolic tRNA into Plant Mitochondria

L. Marechal-Drouard, I. Small, H. Mireau, 1999 .

Import and editing of plant mitochondrial transfer RNAs

Raman Kumar, C. Remacle, L. Marechal-Drouard, 1998 .

Import of transfer RNAs into plant mitochondria

L. Marechal-Drouard, I. Small, A. Dietrich, 1995 .

Surveillance and Cleavage of Eukaryotic tRNAs

L. Marechal-Drouard, I. Small, A. Duchêne, 2015, International journal of molecular sciences.

Pentatricopeptide Repeat Proteins in Trypanosoma brucei Function in Mitochondrial Ribosomes

A. Schneider, I. Small, L. Read, 2007, Molecular and Cellular Biology.

Albinism does not correlate with biparental inheritance of plastid DNA in interspecific hybrids in Cicer species.

M. Kumari, K. Siddique, I. Small, 2011, Plant science : an international journal of experimental plant biology.

On the expansion of the pentatricopeptide repeat gene family in plants.

Ian Small, Charles Andres, Kei Iida, 2008, Molecular biology and evolution.

Is agriculture driving the diversification of the Bemisia tabaci species complex (Hemiptera: Sternorrhyncha: Aleyrodidae)?: Dating, diversification and biogeographic evidence revealed

C. Bell, I. Small, G. Evans, 2013, BMC Evolutionary Biology.

In Silico Identification of Candidate Genes for Fertility Restoration in Cytoplasmic Male Sterile Perennial Ryegrass (Lolium perenne L.)

Tim Sykes, I. Small, B. Studer, 2016, Genome biology and evolution.

SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome

Ian R. Castleden, A. Harvey Millar, Ian Small, 2014, Bioinform..

PPR-SMRs

I. Small, L. Boykin, J. Melonek, 2013, RNA biology.

Purification of mitochondria and mitochondrial nucleic acids from embryogenic suspension cultures of a gymnosperm, Larix x leptoeuropaea

Raman Kumar, I. Small, M. Lelu, 1995, Plant Cell Reports.

Arabidopsis tRNA Adenosine Deaminase Arginine Edits the Wobble Nucleotide of Chloroplast tRNAArg(ACG) and Is Essential for Efficient Chloroplast Translation[W]

M. Bergdoll, B. Pogson, I. Small, 2009, The Plant Cell Online.

Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications.

Thomas Altmann, Yves Moreau, Hans Lehrach, 2004, Genome research.

The genetic basis of cytoplasmic male sterility and fertility restoration in wheat

I. Small, P. Perez, J. Melonek, 2021, Nature Communications.

Plastome-Wide Rearrangements and Gene Losses in Carnivorous Droseraceae

Julian Tonti-Filippini, K. Dixon, A. Cross, 2019, Genome biology and evolution.

Recent range expansion in Australian hummock grasses (Triodia) inferred using genotyping-by-sequencing

M. Barrett, P. Grierson, I. Small, 2019, AoB PLANTS.

Role of editing in plant mitochondrial transfer RNAs.

L. Marechal-Drouard, I. Small, K. Tomita, 2002, Gene.

RNA editing of larch mitochondrial tRNA(His) precursors is a prerequisite for processing.

C. Remacle, L. Marechal-Drouard, I. Small, 1996, Nucleic acids research.

A reevaluation of dual-targeting of proteins to mitochondria and chloroplasts.

I. Small, Chris Carrie, 2013, Biochimica et biophysica acta.

nMAT1, a nuclear-encoded maturase involved in the trans-splicing of nad1 intron 1, is essential for mitochondrial complex I assembly and function.

A. Fernie, W. Araújo, I. Small, 2012, The Plant journal : for cell and molecular biology.

Nucleotide and RNA Metabolism Prime Translational Initiation in the Earliest Events of Mitochondrial Biogenesis during Arabidopsis Germination1[W][OA]

Simon R. Law, A. Millar, J. Whelan, 2012, Plant Physiology.

Two Interacting Proteins Are Necessary for the Editing of the NdhD-1 Site in Arabidopsis Plastids[C][W]

I. Small, T. Shikanai, K. Okuda, 2012, Plant Cell.

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts

Arnaud Couloux, Michel Schneider, Stephane Rombauts, 2004, Nucleic Acids Res..

Duplication and Quadruplication of Arabidopsis thaliana Cysteinyl- and Asparaginyl-tRNA Synthetase Genes of Organellar Origin

I. Small, O. Grandjean, D. Lancelin, 2000, Journal of Molecular Evolution.

Approaches to defining dual-targeted proteins in Arabidopsis.

J. Whelan, I. Small, Chris Carrie, 2009, The Plant journal : for cell and molecular biology.

Two birds with one stone: genes that encode products targeted to two or more compartments

K. Akashi, I. Small, H. Mireau, 1998, Plant Molecular Biology.

A single base change prevents import of cytosolic tRNA(Ala) into mitochondria in transgenic plants.

L. Marechal-Drouard, I. Small, A. Dietrich, 1996, The Plant journal : for cell and molecular biology.

High intraspecific diversity of Restorer‐of‐fertility‐like genes in barley

P. Bayer, D. Edwards, I. Small, 2018, The Plant journal : for cell and molecular biology.

Targeted cleavage of nad6 mRNA induced by a modified pentatricopeptide repeat protein in plant mitochondria

I. Small, Catherine Colas des Francs‐Small, Lilian Vincis Pereira Sanglard, 2018, Communications Biology.

The gene encoding Arabidopsis thaliana mitochondrial ribosomal protein S13 is a recent duplication of the gene encoding plastid S13

I. Small, B. Hoffmann, P. Mollier, 2002, Current Genetics.

The Pentatricopeptide Repeat Protein MEF100 Is Required for the Editing of Four Mitochondrial Editing Sites in Arabidopsis

I. Small, Catherine Colas des Francs‐Small, Bernard Gutmann, 2021, Cells.

The mitochondrial pentatricopeptide repeat protein PPR19 is involved in the stabilization of NADH dehydrogenase 1 transcripts and is crucial for mitochondrial function and Arabidopsis thaliana development.

Ji Hoon Han, I. Small, Hunseung Kang, 2017, The New phytologist.

The potential for manipulating RNA with pentatricopeptide repeat proteins.

Ian Small, I. Small, Takahiro Nakamura, 2014, The Plant journal : for cell and molecular biology.

nMAT4, a maturase factor required for nad1 pre-mRNA processing and maturation, is essential for holocomplex I biogenesis in Arabidopsis mitochondria.

I. Small, E. Belausov, Y. Many, 2014, The Plant journal : for cell and molecular biology.

Identification of a Pentatricopeptide Repeat Protein Implicated in Splicing of Intron 1 of Mitochondrial nad7 Transcripts

Sandra K. Tanz, S. Kopriva, Anna Koprivova, 2010, The Journal of Biological Chemistry.

Remodeled Respiration in ndufs4 with Low Phosphorylation Efficiency Suppresses Arabidopsis Germination and Growth and Alters Control of Metabolism at Night1[W][OA]

A. Harvey Millar, Sandra K. Tanz, Adam J. Carroll, 2009, Plant Physiology.

The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana.

A. Millar, M. Badger, I. Small, 2008, The Plant journal : for cell and molecular biology.

The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts.

Sandra K. Tanz, F. Myouga, R. Motohashi, 2009, The Plant journal : for cell and molecular biology.

Surrogate mutants for studying mitochondrially encoded functions.

I. Small, Catherine Colas des Francs‐Small, 2014, Biochimie.

The Cytoskeleton and the Peroxisomal-Targeted SNOWY COTYLEDON3 Protein Are Required for Chloroplast Development in Arabidopsis[W]

K. Apel, B. Pogson, J. Whelan, 2010, Plant Cell.

Mutations in an Arabidopsis Mitochondrial Transcription Termination Factor–Related Protein Enhance Thermotolerance in the Absence of the Major Molecular Chaperone HSP101[W]

E. Vierling, I. Small, Minsoo Kim, 2012, Plant Cell.

Overlapping Destinations for Two Dual Targeted Glycyl-tRNA Synthetases in Arabidopsis thaliana and Phaseolus vulgaris *

I. Small, A. Duchêne, N. Peeters, 2001, The Journal of Biological Chemistry.

The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth.

Yuxiang Cheng, I. Small, A. Chateigner-Boutin, 2009, The Plant journal : for cell and molecular biology.

Small kernel 1 encodes a pentatricopeptide repeat protein required for mitochondrial nad7 transcript editing and seed development in maize (Zea mays) and rice (Oryza sativa).

X. Li, Xiaomin Wang, I. Small, 2014, The Plant journal : for cell and molecular biology.

An Arabidopsis Dual-Localized Pentatricopeptide Repeat Protein Interacts with Nuclear Proteins Involved in Gene Expression Regulation[W]

P. Giegé, L. Choulier, I. Small, 2011, Plant Cell.

The strange evolutionary history of plant mitochondrial tRNAs and their aminoacyl-tRNA synthetases

K. Akashi, W. Sakamoto, J. Ovesná, 1999 .

Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.

V. Cognat, L. Marechal-Drouard, I. Small, 2005, Proceedings of the National Academy of Sciences of the United States of America.

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis

Ian R. Castleden, A. Harvey Millar, Ian Small, 2012, Nucleic Acids Res..

Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts

D. Leister, Ute Armbruster, I. Small, 2011, Journal of experimental botany.

CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.

P. León, I. Small, A. Chateigner-Boutin, 2008, The Plant journal : for cell and molecular biology.

Evolutionary model of plastidial RNA editing in angiosperms presumed from genome-wide analysis of Amborella trichopoda.

I. Small, T. Shikanai, Kota Ishibashi, 2019, Plant & cell physiology.

Transfer RNA import into plant mitochondria.

L. Marechal-Drouard, I. Small, A. Dietrich, 1995, Methods in enzymology.

Complete Chloroplast Genome Sequences of Four Meliaceae Species and Comparative Analyses

I. Small, B. Kersten, M. Mader, 2018, International journal of molecular sciences.

The plastid redox insensitive 2 mutant of Arabidopsis is impaired in PEP activity and high light-dependent plastid redox signalling to the nucleus.

T. Kleine, Peter Kindgren, I. Small, 2012, The Plant journal : for cell and molecular biology.

Large scale genome skimming from herbarium material for accurate plant identification and phylogenomics

Julian Tonti-Filippini, M. Byrne, I. Small, 2020, Plant Methods.

Resolving intergeneric relationships in the aervoid clade and the backbone of Ptilotus (Amaranthaceae): Evidence from whole plastid genomes and morphology

I. Small, Xiao Zhong, K. Thiele, 2019, TAXON.

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

J. Keilwagen, D. Swarbreck, J. Poland, 2021, Nature Genetics.

The E domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent for RNA editing.

Sandra K. Tanz, S. Tanz, I. Small, 2013, The Plant journal : for cell and molecular biology.

OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1.

Sandra K. Tanz, S. Tanz, I. Small, 2011, The Plant journal : for cell and molecular biology.

Identification of a Major Soluble Protein in Mitochondria from Nonphotosynthetic Tissues as NAD-Dependent Formate Dehydrogenase

I. Small, R. Rémy, C. C. des Francs-Small, 1993, Plant physiology.

The Pentatricopeptide Repeat Gene OTP43 Is Required for trans-Splicing of the Mitochondrial nad1 Intron 1 in Arabidopsis thaliana[W]

Claire Lurin, Nicolas L Taylor, A. Millar, 2007, The Plant Cell Online.

The Pentatricopeptide Repeat Protein EMB2654 Is Essential for Trans-Splicing of a Chloroplast Small Ribosomal Subunit Transcript1[OPEN]

I. Small, H. Ruwe, N. Aryamanesh, 2016, Plant Physiology.

MRPS27 is a pentatricopeptide repeat domain protein required for the translation of mitochondrially encoded proteins

J. Whelan, I. Small, R. Narsai, 2012, FEBS letters.

In Arabidopsis thaliana distinct alleles encoding mitochondrial RNA PROCESSING FACTOR 4 support the generation of additional 5′ termini of ccmB transcripts

S. Binder, I. Small, Katrin Stoll, 2017, Plant Molecular Biology.

Structure in mutualistic networks

C. Mirkin, D. Pine, S. Renner, 2007 .

Discrete mutations in the presequence of potato formate dehydrogenase inhibit the in vivo targeting of GFP fusions into mitochondria.

I. Small, O. Grandjean, Catherine Colas des Francs‐Small, 2003, Biochemical and biophysical research communications.

A unique C-terminal domain contributes to the molecular function of restorer-of-fertility proteins in plant mitochondria

C. Bond, I. Small, J. Melonek, 2023, bioRxiv.

The GENOMES UNCOUPLED1 protein has an ancient, highly conserved role in chloroplast gene expression but not in retrograde signalling

I. Small, Suvi Honkanen, 2022, bioRxiv.

Cofactor-independent RNA editing by a synthetic S-type PPR protein

C. Bond, I. Small, J. Schmidberger, 2021, Synthetic biology.

The coordinated action of PPR4 and EMB2654 on each intron half mediates trans-splicing of rps12 transcripts in plant chloroplasts.

I. Small, Hunseung Kang, Catherine Colas des Francs‐Small, 2019, The Plant journal : for cell and molecular biology.

The E domain of CRR2 participates in sequence-specific recognition of RNA in plastids.

Peter Kindgren, I. Small, C. Schmitz-Linneweber, 2018, The New phytologist.

SOT1, a pentatricopeptide repeat protein with a small MutS-related domain, is required for correct processing of plastid 23S-4.5S rRNA precursors in Arabidopsis thaliana.

I. Small, H. Ruwe, J. Melonek, 2016, The Plant journal : for cell and molecular biology.

Predictable Alteration of Sequence Recognition by RNA Editing Factors from Arabidopsis[OPEN]

Ian Small, Charles S Bond, C. Bond, 2015, Plant Cell.

Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing.

Ian Small, I. Small, T. Shikanai, 2014, The Plant journal : for cell and molecular biology.

The cytidine deaminase signature HxE(x)n CxxC of DYW1 binds zinc and is necessary for RNA editing of ndhD-1.

Ian Small, Charles S Bond, Claire Lurin, 2014, The New phytologist.

A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype.

Ian Small, Volker Knoop, Peter Kindgren, 2013, The Plant journal : for cell and molecular biology.

Nuclearly encoded splicing factors implicated in RNA splicing in higher plant organelles.

I. Small, C. Lurin, Andéol Falcon de Longevialle, 2010, Molecular plant.

A Study of New Arabidopsis Chloroplast RNA Editing Mutants Reveals General Features of Editing Factors and Their Target Sites[W][OA]

Sandra K. Tanz, S. Tanz, I. Small, 2009, The Plant Cell Online.

Pentatricopeptide Repeat Proteins with the DYW Motif Have Distinct Molecular Functions in RNA Editing and RNA Cleavage in Arabidopsis Chloroplasts[W]

F. Myouga, R. Motohashi, K. Shinozaki, 2009, The Plant Cell Online.

A hypothesis on the identification of the editing enzyme in plant organelles

Ian Small, Volker Knoop, Claire Lurin, 2007, FEBS letters.

Plant RNA editing

Ian Small, I. Small, A. Chateigner-Boutin, 2010, RNA biology.

Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs

D. Leister, Ute Armbruster, I. Small, 2009, Proceedings of the National Academy of Sciences.

Editing of Chloroplast rps14 by PPR Editing Factor EMB2261 Is Essential for Arabidopsis Development

Peter Kindgren, I. Small, Bernard Gutmann, 2018, Front. Plant Sci..

The SCO2 protein disulphide isomerase is required for thylakoid biogenesis and interacts with LHCB1 chlorophyll a/b binding proteins which affects chlorophyll biosynthesis in Arabidopsis seedlings.

Joachim Kilian, K. Harter, D. Wanke, 2012, The Plant journal : for cell and molecular biology.

Mutations in a mitochondrial transcription termination factor (mTERF)-related protein enhance thermotolerance in the absence of the major molecular chaperone HSP101

E. Vierling, I. Small, Minsoo Kim, 2012 .

Remodeled Respiration in ndufs 4 with Low Phosphorylation Efficiency Suppresses Arabidopsis Germination and Growth and Alters Control of Metabolism at Night 1 [ W ] [ OA ]

Sandra K. Tanz, Adam J. Carroll, Adam J Carroll, 2009 .

Organelle transcriptomes: products of a deconstructed genome.

I. Small, O. Rackham, A. Filipovska, 2013, Current opinion in microbiology.

Editing of plant mi to chon drial trans fer RNAs

L. Marechal-Drouard, I. Small, K. Tomita, 2001 .

Editing of plant mitochondrial transfer RNAs.

L. Marechal-Drouard, I. Small, K. Tomita, 2001, Acta biochimica Polonica.

A PORR domain protein required for rpl2 and ccmF(C) intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria.

A. Barkan, I. Small, Oren Ostersetzer-Biran, 2012, The Plant journal : for cell and molecular biology.

Evolution of cox2 introns in angiosperm mitochondria and efficient splicing of an elongated cox2i691 intron.

I. Small, P. Nevill, K. A. Howell, 2023, Gene.

SUBA: the Arabidopsis Subcellular Database

Julian Tonti-Filippini, A. Millar, I. Small, 2007 .

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

J. Keilwagen, D. Swarbreck, J. Poland, 2021, Nature Genetics.

Implication of 5′-flanking sequence elements in expression of a plant tRNALeugene

N. Choisne, I. Small, G. Pelletier, 2004, Plant Molecular Biology.

Deepred-Mt: Deep representation learning for predicting C-to-U RNA editing in plant mitochondria

Ian Small, Alejandro Edera, Diego H. Milone, 2021, Comput. Biol. Medicine.

Genome-scale transfer of mitochondrial DNA from legume hosts to the holoparasite Lophophytum mirabile (Balanophoraceae).

I. Small, P. Nevill, K. A. Howell, 2019, Molecular phylogenetics and evolution.

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution

C. Bond, I. Small, Sota Fujii, 2011, Proceedings of the National Academy of Sciences.

Shifting the limits in wheat research and breeding using a fully annotated reference genome

Jonathan D. G. Jones, Karl G. Kugler, J. Rogers, 2018, Science.

Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants.

Mark F. Fisher, C. Bond, S. Yiu, 2016, The Plant journal : for cell and molecular biology.

Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit

P. Bühlmann, L. Hennig, W. Gruissem, 2012 .

Novel Proteins, Putative Membrane Transporters, and an Integrated Metabolic Network Are Revealed by Quantitative Proteomic Analysis of Arabidopsis Cell Culture Peroxisomes1[W][OA]

Steven M. L. Smith, I. Castleden, I. Small, 2008, Plant Physiology.

Plant organellar RNA maturation

Alexandra-Viola Bohne, J. Nickelsen, I. Small, 2023, The Plant cell.

Two Interacting Proteins Are Necessary for the Editing of the NdhD-1 Site in Arabidopsis Plastids[C][W]

I. Small, T. Shikanai, K. Okuda, 2012, Plant Cell.

Phage-Type RNA Polymerase RPOTmp Performs Gene-Specific Transcription in Mitochondria of Arabidopsis thaliana[W][OA]

A. Millar, I. Small, T. Börner, 2009, The Plant Cell Online.

Nucleotide and RNA Metabolism Prime Translational Initiation in the Earliest Events of Mitochondrial Biogenesis during Arabidopsis Germination1[W][OA]

Simon R. Law, J. Whelan, I. Small, 2012, Plant Physiology.

Alteration of Mitochondrial Transcript Expression in Arabidopsis thaliana Using a Custom-Made Library of Pentatricopeptide Repeat Proteins

I. Small, Catherine Colas des Francs‐Small, Lilian Vincis Pereira Sanglard, 2023, International journal of molecular sciences.