J. Nesme

发表

Fate of invading bacteria in soil and survival of transformants after simulated uptake of transgenes, as evaluated by a model system based on lindane degradation.

P. Simonet, Å. Frostegård, Xiaojun Zhang, 2012, Research in microbiology.

Prokaryotic Community Composition and Extracellular Polymeric Substances Affect Soil Microaggregation in Carbonate Containing Semiarid Grasslands

S. Sørensen, R. Lázaro, A. Sóle-Benet, 2020, Frontiers in Environmental Science.

Extended spectrum β-lactamase and carbapenemase genes are substantially and sequentially reduced during conveyance and treatment of urban sewage

S. Sørensen, B. Smets, D. Graham, 2020, bioRxiv.

Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes

S. Sørensen, B. Smets, J. Nesme, 2019, The ISME Journal.

Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli

S. Sørensen, D. Nielsen, V. Bortolaia, 2019, Antimicrobial Agents and Chemotherapy.

: Plasmids persist in a microbial community by providing fitness benefit to multiple

S. Sørensen, B. Smets, J. Nesme, 2019 .

Comparison of antibiotic-resistant bacteria and antibiotic resistance genes abundance in hospital and community wastewater: A systematic review.

S. Sørensen, B. Smets, J. Kreft, 2020, The Science of the total environment.

Large-Scale Metagenomic-Based Study of Antibiotic Resistance in the Environment

Pascal Simonet, Tom O. Delmont, Timothy M. Vogel, 2014, Current Biology.

Metal-induced bacterial interactions promote diversity in river-sediment microbiomes.

S. Sørensen, J. Nesme, R. Wattiez, 2020, FEMS microbiology ecology.

Microbial community development and unseen diversity recovery in inoculated sterile soil

Tom O. Delmont, T. Vogel, M. Ceccherini, 2014, Biology and Fertility of Soils.

Construction of Simplified Microbial Consortia to Degrade Recalcitrant Materials Based on Enrichment and Dilution-to-Extinction Cultures

S. Sørensen, Samuel Jacquiod, J. Nesme, 2019, bioRxiv.

Impact of Long-Term Organic and Mineral Fertilization on Rhizosphere Metabolites, Root–Microbial Interactions and Plant Health of Lettuce

S. Sørensen, G. Neumann, J. Nesme, 2021, Frontiers in Microbiology.

Composted Sewage Sludge Influences the Microbiome and Persistence of Human Pathogens in Soil

S. Sørensen, J. Nesme, A. Schikora, 2020, Microorganisms.

Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture

S. Sørensen, M. Caldara, A. Pihlanto, 2021, Microorganisms.

Long-Term Fertilization Strategy Impacts Rhizoctonia solani–Microbe Interactions in Soil and Rhizosphere and Defense Responses in Lettuce

S. Sørensen, G. Neumann, J. Nesme, 2022, Microorganisms.

Exudates from miscanthus x giganteus change the response of a root-associated Pseudomonas putida strain towards heavy metals.

M. Schloter, P. Schröder, B. Michalke, 2022, Environmental pollution.

Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning

S. Sørensen, B. Smets, J. Kreft, 2022, bioRxiv.

Biofilm cultivation facilitates coexistence and adaptive evolution in an industrial bacterial community

K. Foster, B. Svensson, J. Nesme, 2022, npj Biofilms and Microbiomes.

Influence of sewage sludge stabilization method on microbial community and the abundance of antibiotic resistance genes.

S. Sørensen, S. Goreta Ban, J. Nesme, 2022, Waste management.

Kin discrimination promotes horizontal gene transfer between unrelated strains in Bacillus subtilis

S. Sørensen, I. Mandic-Mulec, J. Nesme, 2019, Nature Communications.

Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community

S. Sørensen, B. Smets, J. Nesme, 2018 .

Metal-induced bacterial interactions promote diversity in river-sediment microbiomes.

S. Sørensen, J. Nesme, R. Wattiez, 2019, FEMS microbiology ecology.

Quantification and fate of plasmid-specific bacteriophages in wastewater: Beyond the F-coliphages.

B. Smets, J. Nesme, A. Dechesne, 2022, Water research.

Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes?

S. Sørensen, J. Siemens, J. Nesme, 2022, Environmental microbiology.

Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms.

S. Sørensen, L. Hansen, Samuel Jacquiod, 2020, The Science of the total environment.

Microbial community development and unseen diversity recovery in inoculated sterile soil

Tom O. Delmont, T. Vogel, M. Ceccherini, 2014, Biology and Fertility of Soils.

The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria.

Pascal Simonet, P. Simonet, J. Nesme, 2015, Environmental microbiology.

CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

Peter C. Fineran, Shiraz A. Shah, S. Sørensen, 2021, bioRxiv.

Importance of microbial communities at the root-soil interface for extracellular polymeric substances and soil aggregation in semiarid grasslands

S. Sørensen, R. Lázaro, E. Cammeraat, 2021, Soil Biology and Biochemistry.

Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles

Basten L. Snoek, B. Snoek, A. Classen, 2021, The ISME journal.

Back to the Future of Soil Metagenomics

D. Le Paslier, S. Sørensen, M. Schloter, 2016, Front. Microbiol..

Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs

M. Arumugam, S. Sørensen, C. Rensing, 2021, bioRxiv.

Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus

M. Schloter, J. Nesme, S. Rath, 2019, Microbiome.

Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus

M. Schloter, J. Nesme, S. Rath, 2019, Microbiome.

Rhizosphere microbial communities associated to rose replant disease: links to plant growth and root metabolites

S. Sørensen, J. Nesme, K. Smalla, 2020, Horticulture research.

IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage

S. Sørensen, B. Smets, J. Nesme, 2022, Molecular ecology.

Comparative Genomics of Novel Agrobacterium G3 Strains Isolated From the International Space Station and Description of Agrobacterium tomkonis sp. nov.

N. Singh, K. Venkateswaran, Florent Lassalle, 2021, Frontiers in Microbiology.

Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms.

S. Sørensen, K. Neuhaus, J. Nesme, 2020, Environmental microbiology.

Deciphering bacteria associated with a pre-parasitic stage of the root-knot nematode Meloidogyne hapla in nemato-suppressive and nemato-conducive soils

S. Sørensen, H. Heuer, J. Nesme, 2022, Applied Soil Ecology.

Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis

S. Sørensen, J. Nesme, Xuanji Li, 2021, npj Biofilms and Microbiomes.

Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis

J. Nesme, Xuanji Li, M. Burmølle, 2021, npj Biofilms and Microbiomes.

Importance of substrate quality and clay content on microbial extracellular polymeric substances production and aggregate stability in soils

Phuong Thi Tuyet Nguyen, S. Sørensen, J. Nesme, 2022, Biology and Fertility of Soils.

Changes induced by heavy metals in the plant-associated microbiome of Miscanthus x giganteus.

M. Schloter, P. Schröder, B. Michalke, 2019, The Science of the total environment.

Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiome dysbiosis.

Samuel Jacquiod, J. Nesme, K. Smalla, 2021, FEMS microbiology ecology.

Reduced tillage, cover crops and organic amendments affect soil microbiota and improve soil health in Uruguayan vegetable farming systems.

S. Sørensen, J. Nesme, K. Smalla, 2021, FEMS microbiology ecology.

Intra-species DNA exchange: Bacillus subtilis prefers sex with less related strains

S. Sørensen, I. Mandic-Mulec, J. Nesme, 2019, bioRxiv.

The role of plasmids in the gut microbiome during the first year of life

S. Sørensen, J. Nesme, J. Russel, 2023, bioRxiv.

Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories.

S. Sørensen, G. Neumann, J. Nesme, 2021, FEMS microbiology ecology.

Co-localization of antibiotic resistance genes is widespread in the infant gut microbiome and associates with an immature gut microbial composition

Shiraz A. Shah, H. Bisgaard, M. Rasmussen, 2023, bioRxiv.

Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes

S. Sørensen, J. Nesme, J. Russel, 2021, mBio.

EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments

S. Sørensen, D. Stekel, B. Smets, 2021, One health.

Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage.

S. Sørensen, B. Smets, D. Graham, 2021, Environmental science & technology.

Conjugative dissemination of plasmids in rapid sand filters: a trojan horse strategy to enhance pesticide degradation in groundwater treatment

S. Sørensen, J. Nesme, J. Russel, 2020, bioRxiv.

Complete Genome Sequences of Two Plant-Associated Pseudomonas putida Isolates with Increased Heavy-Metal Tolerance

M. Schloter, J. Nesme, A. Schöler, 2017, Genome Announcements.

Extended-Spectrum -Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage

S. Sørensen, B. Smets, D. Graham, 2021 .

Improvement of pesticide removal in contaminated media using aqueous extracts from contaminated biopurification systems.

S. Sørensen, J. Nesme, P. van Dillewijn, 2019, The Science of the total environment.

A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media.

S. Sørensen, J. Nesme, P. van Dillewijn, 2022, The Science of the total environment.

Biosolids for safe land application does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes? application: does treatment when antibiotics, mobile genetic elements genes?

J. Nesme, K. Smalla, Sven Jechalke, 2022 .

Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus

M. Schloter, J. Nesme, S. Rath, 2019, Microbiome.

Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

J. Nesme, Xuanji Li, H. L. Røder, 2024, The ISME journal.

Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater.

J. Nesme, A. Dechesne, Zhuofeng Yu, 2024, Ecotoxicology and environmental safety.

IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage

S. Sørensen, B. Smets, J. Nesme, 2021, Molecular ecology.

Hordeum vulgare differentiates its response to beneficial bacteria

J. Nesme, A. Schikora, J. Imani, 2023, BMC Plant Biology.

Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems.

B. Smets, J. Nesme, A. Dechesne, 2023, Environment international.

into the circular the

J. Nesme, A. Dechesne, Zhuofeng Yu, 2022 .

Characterization of Extracellular Biosurfactants Expressed by a Pseudomonas putida Strain Isolated from the Interior of Healthy Roots from Sida hermaphrodita Grown in a Heavy Metal Contaminated Soil

M. Schloter, J. Nesme, G. Płaza, 2019, Current Microbiology.