I. Hautefort

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4 Molecular methods for monitoring bacterial gene expression during infection

I. Hautefort, J. Hinton, 2002 .

Measurement of bacterial gene expression in vivo.

I. Hautefort, J. Hinton, 2000, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

Real‐time studies of the progression of bacterial infections and immediate tissue responses in live animals

B. Molitoris, J. Boekel, I. Hautefort, 2007, Cellular microbiology.

Cell wall anchoring of the Streptococcus pyogenes M6 protein in various lactic acid bacteria

V. Fischetti, S. Ehrlich, I. Hautefort, 1997, Journal of bacteriology.

Multiple redundant stress resistance mechanisms are induced in Salmonella enterica serovar Typhimurium in response to alteration of the intracellular environment via TLR4 signalling.

H. Northen, D. Maskell, C. Bryant, 2009, Microbiology.

Regulatory network analysis of Paneth cell and goblet cell enriched gut organoids using transcriptomics approaches

W. Haerty, T. Korcsmáros, J. Brooks, 2019, bioRxiv.

Everything You Always Wanted to Know About Organoid-Based Models (and Never Dared to Ask)

T. Korcsmáros, D. Papp, I. Hautefort, 2022, Cellular and molecular gastroenterology and hepatology.

Targeted interplay between bacterial pathogens and host autophagy

T. Korcsmáros, E. Ari, E. Jones, 2019, Autophagy.

Mice deficient in intestinal γδ intraepithelial lymphocytes display an altered intestinal O-glycan profile compared with wild-type littermates.

N. Juge, I. Hautefort, Olivia I. Kober, 2015, Glycobiology.

Integrative analysis of Paneth cell proteomic and transcriptomic data from intestinal organoids reveals functional processes dependent on autophagy

F. Di Palma, W. Haerty, T. Korcsmáros, 2019, Disease Models & Mechanisms.

Integrative analysis of Paneth cell proteomic data from intestinal organoids reveals functional processes affected in Crohn’s disease due to autophagy impairment

T. Korcsmáros, A. Watson, S. Armstrong, 2018, bioRxiv.

Selection of Lactobacillus fermentum strains able to durably colonize the digestive tract of mice harboring a complex human flora

M. Fons, I. Hautefort, M. Ladiré, 1999 .

Computational prediction and experimental validation of Salmonella Typhimurium SopE-mediated fine-tuning of autophagy in intestinal epithelial cells

I. Macaulay, T. Korcsmáros, Anne-Claire Jacomin, 2022, Frontiers in Cellular and Infection Microbiology.

A Bacterial Homolog of a Eukaryotic Inositol Phosphate Signaling Enzyme Mediates Cross-kingdom Dialog in the Mammalian Gut

C. Brearley, P. Bailey, A. Hemmings, 2014, Cell reports.

Butyrate Specifically Down-Regulates Salmonella Pathogenicity Island 1 Gene Expression

A. Thompson, F. Haesebrouck, F. Pasmans, 2006, Applied and Environmental Microbiology.

Inactivation of tryptic activity by a human-derived strain of Bacteroides distasonis in the large intestines of gnotobiotic rats and mice

J. Iovanna, I. Hautefort, P. Raibaud, 1996, Applied and environmental microbiology.

Single-Copy Green Fluorescent Protein Gene Fusions Allow Accurate Measurement of Salmonella Gene Expression In Vitro and during Infection of Mammalian Cells

I. Hautefort, J. Hinton, M. Proença, 2003, Applied and Environmental Microbiology.

Regulatory network analysis of Paneth cell and goblet cell enriched gut organoids using transcriptomics approaches.

T Wileman, F. Di Palma, W. Haerty, 2019, Molecular omics.

Regulatory network analysis of Paneth cell and goblet cell enriched gut organoids using transcriptomics approaches

F. Di Palma, W. Haerty, T. Korcsmáros, 2019, bioRxiv.

CytokineLink: A Cytokine Communication Map to Analyse Immune Responses—Case Studies in Inflammatory Bowel Disease and COVID-19

T. Korcsmáros, D. Módos, I. Hautefort, 2021, Cells.

CytokineLink: a cytokine communication map to analyse immune responses in inflammatory and infectious diseases

T. Korcsmáros, D. Módos, I. Hautefort, 2021 .

SARS-CoV-2 Causes a Different Cytokine Response Compared to Other Cytokine Storm-Causing Respiratory Viruses in Severely Ill Patients

T. Korcsmáros, D. Módos, I. Hautefort, 2020, Frontiers in Immunology.

ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways

Lejla Gul, Agatha Treveil, Balazs Bohar, 2020, bioRxiv.

During infection of epithelial cells Salmonella enterica serovar Typhimurium undergoes a time-dependent transcriptional adaptation that results in simultaneous expression of three type 3 secretion systems

M. Parker, A. Thompson, I. Hautefort, 2008, Cellular microbiology.

The Uptake, Trafficking, and Biodistribution of Bacteroides thetaiotaomicron Generated Outer Membrane Vesicles

I. Hautefort, S. Carding, U. Mayer, 2020, Frontiers in Microbiology.

Adhesion to the digestive mucosa is not sufficient for durable persistence of different Lactobacillus fermentum strains in the digestive tract of mice

I. Hautefort, 2000 .

Benefits and pitfalls of using microarrays to monitor bacterial gene expression during infection.

S. Eriksson, A. Thompson, I. Hautefort, 2004, Current opinion in microbiology.

Intestinal Intraepithelial Lymphocyte-Enterocyte Crosstalk Regulates Production of Bactericidal Angiogenin 4 by Paneth Cells upon Microbial Challenge

Charlotte E. Egan, Jane E. Dalton, I. Hautefort, 2013, PloS one.

Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level

T. Korcsmáros, D. Fazekas, I. Hautefort, 2021, bioRxiv.

All stressed out. Salmonella pathogenesis and reactive nitrogen species.

D. Richardson, I. Hautefort, J. Hinton, 2009, Advances in microbial physiology.

Green fluorescent protein as a marker for conditional gene expression in bacterial cells.

Jay C D Hinton, Isabelle Hautefort, I. Hautefort, 2002, Methods in enzymology.

Salmonella induces flagellin- and MyD88-dependent migration of bacteria-capturing dendritic cells into the gut lumen.

S. Clare, I. Hautefort, J. Hinton, 2009, Gastroenterology.

Identification of master regulators in goblet cells and Paneth cells using transcriptomics profiling of gut organoids and multi-layered networks

W. Haerty, T. Korcsmáros, I. Hautefort, 2020 .

A Bacterial Homolog of a Eukaryotic Inositol Phosphate Signaling Enzyme Mediates Cross-kingdom Dialog in the Mammalian Gut

C. Brearley, P. Bailey, A. Hemmings, 2014, Cell reports.

M. Parker, A. Thompson, I. Hautefort, 2008, Cellular microbiology.