I. Baums

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What drives phenotypic divergence among coral clonemates?

I. Baums, M. Devlin-Durante, Dana W Williams, 2019, bioRxiv.

What drives phenotypic divergence among coral clonemates of Acropora palmata?

I. Baums, D. Kemp, Meghann K Durante, 2019, Molecular ecology.

Gene Discovery in the Threatened Elkhorn Coral: 454 Sequencing of the Acropora palmata Transcriptome

I. Baums, N. Polato, J. C. Vera, 2011, PloS one.

Multiple Facets of Marine Invertebrate Conservation Genomics.

Jose V. Lopez, M. Medina, I. Baums, 2019, Annual review of animal biosciences.

Genetic species delineation among branching Caribbean Porites corals

M. Hellberg, J. Neigel, Z. Forsman, 2014, Coral Reefs.

Variation in the transcriptional response of threatened coral larvae to elevated temperatures

N. Altman, I. Baums, N. Polato, 2013, Molecular ecology.

Growth Dynamics of the Threatened Caribbean Staghorn Coral Acropora cervicornis: Influence of Host Genotype, Symbiont Identity, Colony Size, and Environmental Setting

D. Lirman, I. Baums, A. Baker, 2014, PloS one.

Sexual vs. asexual reproduction in an ecosystem engineer: the massive coral Montastraea annularis.

Nicola L. Foster, P. Mumby, I. Baums, 2007, The Journal of animal ecology.

Devlin-Durante MK, Baums IB. 2017. Genome-wide survey of single- nucleotide polymorphisms reveals fine-scale population structure and signs of selection in the threatened Caribbean elkhorn coral, Acropora palmata. PeerJ 5:e4077 https://doi.org/10.7717/peerj.4077 Genome-wide survey of single-nucleoti

I. Baums, M. Devlin-Durante, 2018 .

Fallen Pillars: The Past, Present, and Future Population Dynamics of a Rare, Specialist Coral-Algal Symbiosis

I. Baums, C. Lewis, K. Neely, 2018, bioRxiv.

Luminex detection of fecal indicators in river samples, marine recreational water, and beach sand.

K. Goodwin, I. Baums, J. Fell, 2007, Marine pollution bulletin.

Investing in Blue Natural Capital to Secure a Future for the Red Sea Ecosystems

D. Daffonchio, J. Gattuso, P. Macreadie, 2021, Frontiers in Marine Science.

Metabolomic richness and fingerprints of deep-sea coral species and populations

C. Fisher, I. Baums, Samuel A. Vohsen, 2019, Metabolomics.

ECOGIG: Oil spill effects on deep-sea corals through the lenses of natural hydrocarbon seeps and long time series

Erik Cordes, C. Fisher, I. Baums, 2016 .

Caribbean Acropora restoration guide : best practices for propagation and population enhancement.

D. Lirman, D. Gilliam, I. Baums, 2011 .

Rapid recovery of a coral reef at Darwin Island, Galapagos Islands

P. Glynn, B. Riegl, I. Baums, 2009 .

Genotypic variation influences reproductive success and thermal stress tolerance in the reef building coral, Acropora palmata

N. Altman, I. Baums, M. Devlin-Durante, 2013, Coral Reefs.

Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the Genus Symbiodinium

I. Baums, Craig T. Michell, J. E. Parkinson, 2016, Genome biology and evolution.

Coral Communities as Indicators of Ecosystem-Level Impacts of the Deepwater Horizon Spill

Erik Cordes, A. Demopoulos, C. Fisher, 2014 .

Genomic Variants Among Threatened Acropora Corals

W. Miller, A. Ratan, O. Bedoya-Reina, 2018, G3: Genes, Genomes, Genetics.

Editorial: Coral Reef Restoration in a Changing World: Science-Based Solutions

A. Banaszak, S. Rossi, B. Rinkevich, 2022, Frontiers in Marine Science.

Palau’s warmest reefs harbor a thermally tolerant coral lineage that thrives across different habitats

I. Baums, A. Cohen, M. Fox, 2022 .

Density‐dependent effects on initial growth of a branching coral under restoration

J. Griffin, B. Silliman, I. Baums, 2015 .

STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts

W. Miller, G. V. Kuster, I. Baums, 2020, Scientific Reports.

The deep-sea coral, Callogorgia delta, associates with bacteria belonging to a novel marine branch of the Mollicutes

N. Dubilier, C. Fisher, I. Baums, 2022, bioRxiv.

Cryptic changes in the genetic structure of a highly clonal coral population and the relationship with ecological performance

M. Miller, I. Baums, Dana E Williams, 2014, Coral Reefs.

Preserving and Using Germplasm and Dissociated Embryonic Cells for Conserving Caribbean and Pacific Coral

V. Carter, D. Petersen, I. Baums, 2012, PloS one.

Location-Specific Responses to Thermal Stress in Larvae of the Reef-Building Coral Montastraea faveolata

Carly J. Randall, Christian R. Voolstra, Julia Schnetzer, 2010, PloS one.

Intraspecific diversity among partners drives functional variation in coral symbioses

N. Altman, A. Banaszak, I. Baums, 2015, Scientific Reports.

Assisted gene flow using cryopreserved sperm in critically endangered coral

I. Baums, H. Blackburn, Nikolas Zuchowicz, 2021, Proceedings of the National Academy of Sciences.

Getting a grip at the edge: recolonization and introgression in eastern Pacific Porites corals

M. Hellberg, Z. Forsman, I. Baums, 2016 .

Molecular tools for coral reef restoration: Beyond biomarker discovery

M. Matz, I. Baums, S. A. Kitchen, 2018, Conservation Letters.

High genotypic diversity of the reef-building coral Porites lobata (Scleractinia: Poritidae) in Isla del Coco National Park, Costa Rica

I. Baums, J. Cortés, J. Boulay, 2012, Revista de Biología Tropical.

Unrecognized coral species diversity masks differences in functional ecology

M. Hellberg, I. Baums, J. Cortés, 2014, Proceedings of the Royal Society B: Biological Sciences.

No gene flow across the Eastern Pacific Barrier in the reef‐building coral Porites lobata

M. Hellberg, I. Baums, N. Polato, 2012, Molecular ecology.

Isolation by distance across the Hawaiian Archipelago in the reef‐building coral Porites lobata

G. Concepcion, R. Toonen, I. Baums, 2010, Molecular ecology.

GEOGRAPHIC VARIATION IN CLONAL STRUCTURE IN A REEF- BUILDING CARIBBEAN CORAL, ACROPORA PALMATA

M. Hellberg, I. Baums, M. Miller, 2006 .

Evolution via somatic genetic variation in modular species.

I. Baums, B. Werner, T. Reusch, 2021, Trends in ecology & evolution.

Connectivity of Caribbean coral populations: complementary insights from empirical and modelled gene flow

Nicola L Foster, Peter J Mumby, Ashwanth Srinivasan, 2012, Molecular ecology.

Ecology of a corallivorous gastropod, Coralliophila abbreviata, on two scleractinian hosts. I: Population structure of snails and corals

I. Baums, M. Miller, A. Szmant, 2003 .

Conservation genomics of natural and managed populations: building a conceptual and practical framework

Gordon Luikart, Michael K Schwartz, Joanna L. Kelley, 2016, Molecular ecology.

Deep-sea corals provide new insight into the ecology, evolution, and the role of plastids in widespread apicomplexan symbionts of anthozoans

Harald R. Gruber-Vodicka, N. Dubilier, C. Fisher, 2020, Microbiome.

Regionally isolated populations of an imperiled Caribbean coral, Acropora palmata

M. Hellberg, I. Baums, M. Miller, 2005, Molecular ecology.

Genomic variation of an endosymbiotic dinoflagellate (Symbiodinium ‘fitti’) among closely related coral hosts

I. Baums, M. Devlin-Durante, S. A. Kitchen, 2021, Molecular ecology.

Age and intraspecific diversity of resilient Acropora communities in Belize

L. Greer, I. Baums, M. Devlin-Durante, 2017, Coral Reefs.

Morphotype is not linked to mitochondrial haplogroups of Caribbean acroporid hybrids

I. Baums, S. A. Kitchen, N. Fogarty, 2021, Coral Reefs.

Morphotype is not linked to mitochondrial haplogroups of Caribbean acroporid hybrids

I. Baums, S. A. Kitchen, N. Fogarty, 2021, Coral Reefs.

The coral symbiont Candidatus Aquarickettsia is variably abundant in threatened Caribbean acroporids and transmitted horizontally

R. V. Thurber, I. Baums, S. A. Kitchen, 2021, The ISME Journal.

Microsatellite abundance across the Anthozoa and Hydrozoa in the phylum Cnidaria

I. Baums, Dannise V. Ruiz‐Ramos, 2014, BMC Genomics.

Response of deep-water corals to oil and chemical dispersant exposure

Erik Cordes, D. M. DeLeo, I. Baums, 2016 .

Inheritance of somatic mutations by animal offspring

I. Baums, Samuel A. Vohsen, S. A. Kitchen, 2022, Science advances.

A bio‐oceanographic filter to larval dispersal in a reef‐building coral

Claire B Paris-Limouzy, I. Baums, L. Chérubin, 2006 .

Potential Connectivity of Coldwater Black Coral Communities in the Northern Gulf of Mexico

A. Bracco, I. Baums, Y. Cardona, 2015, PloS one.

A restoration genetics guide for coral reef conservation

I. Baums, 2008, Molecular ecology.

How old are you? Genet age estimates in a clonal animal

M. Miller, I. Baums, M. Devlin-Durante, 2016, Molecular ecology.

Mendelian microsatellite loci for the Caribbean coral Acropora palmata

M. Hellberg, I. Baums, C. Hughes, 2005 .

I. Baums, M. Devlin-Durante, S. A. Kitchen, 2020, bioRxiv.

Genome-wide survey of single-nucleotide polymorphisms reveals fine-scale population structure and signs of selection in the threatened Caribbean elkhorn coral, Acropora palmata

I. Baums, M. Devlin-Durante, 2017, PeerJ.

Testing the depth-differentiation hypothesis in a deepwater octocoral

T. Shank, Erik Cordes, A. Quattrini, 2015, Proceedings of the Royal Society B: Biological Sciences.

Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic

I. B. Kuffner, M. Matz, I. Baums, 2019, Ecological applications : a publication of the Ecological Society of America.

Gene Flow in Coral Reef Organisms of the Tropical Eastern Pacific

I. Baums, H. Lessios, 2017 .

16 Gene Flow in Coral Reef Organismsof the Tropical Eastern Pacific

I. Baums, H. Lessios, 2016 .

Persistence and Change in Community Composition of Reef Corals through Present, Past, and Future Climates

Hugh Sweatman, Kevin Gross, Erik C. Franklin, 2014, PloS one.

The extended phenotypes of marine symbioses: ecological and evolutionary consequences of intraspecific genetic diversity in coral–algal associations

I. Baums, Melissa S. Roth, J. E. Parkinson, 2014, Front. Microbiol..

Home Bodies and Wanderers: Sympatric Lineages of the Deep-Sea Black Coral Leiopathes glaberrima

C. Fisher, I. Baums, M. Saunders, 2015, PloS one.

Host population genetic structure and zooxanthellae diversity of two reef-building coral species along the Florida Reef Tract and wider Caribbean

M. Miller, I. Baums, M. Devlin-Durante, 2010, Coral Reefs.

Acropora cervicornis genet performance and symbiont identity throughout the restoration process

I. Baums, E. Bartels, K. Lohr, 2018, Coral Reefs.

Bleaching causes loss of disease resistance within the threatened coral species Acropora cervicornis

I. Baums, E. Bartels, E. Muller, 2018, eLife.

Extensive transcriptional variation poses a challenge to thermal stress biomarker development for endangered corals

D. Lirman, I. Baums, M. Devlin-Durante, 2018, Molecular ecology.

New insights into the dynamics between reef corals and their associated dinoflagellate endosymbionts from population genetic studies.

I. Baums, M. Devlin-Durante, T. Lajeunesse, 2014, Molecular ecology.

Microsatellite loci for Symbiodinium A3 (S. fitti) a common algal symbiont among Caribbean Acropora (stony corals) and Indo-Pacific giant clams (Tridacna)

I. Baums, M. Devlin-Durante, T. Lajeunesse, 2010, Conservation Genetics Resources.

Clonal structure and variable fertilization success in Florida Keys broadcast-spawning corals

M. Miller, C. Woodley, I. Baums, 2018, Coral Reefs.

A synopsis of coral restoration genetics

I. Baums, 2008 .

Marginal coral populations: the densest known aggregation of Pocillopora in the Galápagos Archipelago is of asexual origin

T. Smith, I. Baums, M. Devlin-Durante, 2014, Front. Mar. Sci..

Status of Candidate coral, Acropora palmata, and its snail predator in the upper Florida Keys National Marine Sanctuary, 1998-2001

I. Baums, Dana E Williams, M. Miller, 2002 .

Visual discernment of sexual recruits is not feasible for Acropora palmata

I. Baums, Dana E Williams, M. Miller, 2007 .

Genetic status of the Caribbean reef-building coral, Acropora palmata

I. Baums, 2004 .

Clonal diversity impacts coral cover in Acropora cervicornisthickets: Potential relationships between density, growth, and polymorphisms

D. Lirman, B. Gintert, I. Baums, 2019, Ecology and evolution.

Ecology of a corallivorous gastropod, Coralliophila abbreviata, on two scleractinian hosts. II. Feeding, respiration and growth

I. Baums, M. Miller, A. Szmant, 2003 .

Palau’s warmest reefs harbor thermally tolerant corals that thrive across different habitats

I. Baums, A. Cohen, M. Fox, 2022, Communications biology.

An algal symbiont (Breviolum psygmophilum) responds more strongly to chronic high temperatures than its facultatively symbiotic coral host (Astrangia poculata)

J. Finnerty, Elizabeth M Burmester, R. Iglesias-Prieto, 2021, bioRxiv.

Fallen Pillars: The Past, Present, and Future Population Dynamics of a Rare, Specialist Coral-Algal Symbiosis

I. Baums, C. Lewis, K. Neely, 2018, bioRxiv.

Author response: Bleaching causes loss of disease resistance within the threatened coral species Acropora cervicornis

I. Baums, E. Bartels, E. Muller, 2018 .

Six priorities to advance the science and practice of coral reef restoration worldwide

L. Kaufman, A. Banaszak, M. Matz, 2021, Restoration Ecology.

Genome-Wide DNA Methylation Analysis Reveals a Conserved Epigenetic Response to Seasonal Environmental Variation in the Staghorn Coral Acropora cervicornis

I. Baums, D. García-Souto, J. Eirín-López, 2020, Frontiers in Marine Science.

Long distance dispersal and vertical gene flow in the Caribbean brooding coral Porites astreoides

T. Smith, I. Baums, Ross Jones, 2016, Scientific Reports.

Discordant population expansions in four species of coral‐associated Pacific hermit crabs (Anomura: Diogenidae) linked to habitat availability resulting from sea‐level change

E. Franklin, R. Toonen, I. Baums, 2014 .

State of corals and coral reefs of the Galápagos Islands (Ecuador): Past, present and future.

P. Glynn, T. Smith, J. Cole, 2018, Marine pollution bulletin.

Hurricane-Driven Patterns of Clonality in an Ecosystem Engineer: The Caribbean Coral Montastraea annularis

Nicola L. Foster, Claire B Paris-Limouzy, P. Mumby, 2013, PloS one.

The impact of estimator choice: Disagreement in clustering solutions across K estimators for Bayesian analysis of population genetic structure across a wide range of empirical data sets

I. Baums, K. L. Vasquez Kuntz, Kathryn H Stankiewicz, 2021, Molecular ecology resources.

Development of microsatellite markers from four Hawaiian corals: Acropora cytherea, Fungia scutaria, Montipora capitata and Porites lobata

G. Concepcion, R. Toonen, I. Baums, 2010, Conservation Genetics Resources.

Assessment of Host-Associated Genetic Differentiation among Phenotypically Divergent Populations of a Coral-Eating Gastropod across the Caribbean

I. Baums, M. Miller, Margaret W. Miller, 2012, PloS one.

Genotypic variation influences reproductive success and thermal stress tolerance in the reef building coral, Acropora palmata

N. Altman, I. Baums, M. Devlin-Durante, 2013, Coral Reefs.

Contrasting clonal structure among Pocillopora (Scleractinia) communities at two environmentally distinct sites in the Gulf of California

I. Baums, T. Lajeunesse, J. Pinzón, 2012, Coral Reefs.

Stress response of the black coral Leiopathes glaberrima when exposed to sub-lethal amounts of crude oil and dispersant

C. Fisher, I. Baums, Dannise V. Ruiz‐Ramos, 2017 .

Regional population structure of montipora capitata across the hawaiian archipelago

G. Concepcion, R. Toonen, I. Baums, 2014 .

Defining Boundaries for Ecosystem-Based Management: A Multispecies Case Study of Marine Connectivity across the Hawaiian Archipelago

G. Concepcion, R. Toonen, I. Baums, 2011, Journal of marine biology.

Deep-sea corals near cold seeps associate with chemoautotrophic bacteria that are related to the symbionts of cold seep and hydrothermal vent mussels

Harald R. Gruber-Vodicka, N. Dubilier, C. Fisher, 2020, bioRxiv.

Capacity of deep‐sea corals to obtain nutrition from cold seeps aligned with microbiome reorganization

Erik Cordes, C. Fisher, I. Baums, 2022, Global change biology.

Juvenile corals inherit mutations acquired during the parent’s lifespan

I. Baums, Samuel A. Vohsen, S. A. Kitchen, 2020, bioRxiv.

Increasing comparability among coral bleaching experiments

James L. Hench, J. Padilla‐Gamiño, R. V. Thurber, 2020, Ecological applications : a publication of the Ecological Society of America.

Geographic differences in vertical connectivity in the Caribbean coral Montastraea cavernosa despite high levels of horizontal connectivity at shallow depths

T. Smith, I. Baums, Ross Jones, 2014, Molecular ecology.

Reef coral reproduction in the equatorial eastern Pacific: Costa Rica, Panamá, and the Galápagos Islands (Ecuador). VII. Siderastreidae, Psammocora stellata and Psammocora profundacella

J. Ault, H. Guzman, I. Baums, 2012 .

Variation in the transcriptional response of threatened coral larvae to elevated temperatures

N. Altman, I. Baums, N. Polato, 2013, Molecular ecology.

Genome assemblies and genetic maps highlight chromosome-scale macrosynteny in Atlantic acroporids

I. Baums, Sheila A. Kitchen, Kathryn H. Stankiewicz, 2023, bioRxiv.

Phenotypic plasticity for improved light harvesting, in tandem with methylome repatterning in reef-building corals.

R. Iglesias-Prieto, I. Baums, Tom Maher, 2023, Molecular ecology.

Discovery of deep-sea coral symbionts from a novel family of marine bacteria, Oceanoplasmataceae, with severely reduced genomes

Harald R. Gruber-Vodicka, N. Dubilier, C. Fisher, 2023, bioRxiv.

Overcoming barriers to reef restoration: field‐based method for approximate genotyping of Acropora cervicornis

I. Baums, C. Kenkel, Johanna Calle-Triviño, 2023, Restoration Ecology.

Acropora cervicornis genet performance and symbiont identity throughout the restoration process

I. Baums, E. Bartels, K. Lohr, 2018, Coral Reefs.

Population and clonal structure of Acropora cf. hyacinthus to inform coral restoration practices on the Great Barrier Reef

I. Baums, D. Suggett, E. Camp, 2024, Coral Reefs.

Genomic comparison of the temperate coral Astrangia poculata with tropical corals yields insights into winter quiescence, innate immunity, and sexual reproduction

J. Finnerty, K. Barott, I. Baums, 2023, bioRxiv.

Getting a grip at the edge: recolonization and introgression in eastern Pacific Porites corals

M. Hellberg, Z. Forsman, I. Baums, 2016 .