Caroline Belser

发表

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

Anthony Bretaudeau, Hadi Quesneville, Adriana Alberti, 2017, Scientific Reports.

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps

F. Denoeud, P. Wincker, V. Barbe, 2018, Nature Plants.

Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

P. Wincker, V. Barbe, C. Cruaud, 2022, BMC genomics.

A reference genome for pea provides insight into legume genome evolution

P. Wincker, J. Batley, P. Bayer, 2019, Nature Genetics.

Oak genome reveals facets of long lifespan

Olivier Panaud, Hadi Quesneville, Franck Salin, 2018, Nature Plants.

The DNA sequence and analysis of human chromosome 14

Patrick Wincker, Jean Weissenbach, Leroy Hood, 2023, Nature.

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

Francisco M. Cornejo-Castillo, G. Cochrane, P. Bork, 2017, Scientific Data.

Genome assembly using Nanopore-guided long and error-free DNA reads

Stefan Engelen, Mohammed-Amin Madoui, Adriana Alberti, 2015, BMC Genomics.

Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

P. Wincker, J. Aury, C. Cruaud, 2022, GigaScience.

Long-read assembly of the Brassica napus reference genome Darmor-bzh

Corinne Da Silva, F. Denoeud, P. Wincker, 2020, GigaScience.

Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

Corinne Da Silva, S. Sunagawa, J. Poulain, 2022, Scientific data.

Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans

S. Sunagawa, J. Poulain, P. Wincker, 2022, Communications Earth & Environment.

Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence

O. Jaillon, P. Wincker, J. Aury, 2022, Communications Biology.

A novel association of the SMN protein with two major non-ribosomal nucleolar proteins and its implication in spinal muscular atrophy.

A. Munnich, S. Lefebvre, P. Burlet, 2002, Human molecular genetics.

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

J. Aury, K. Labadie, Q. Rougemont, 2018, bioRxiv.

A high-quality reference genome for Tenebrio molitor breeding and sustainable production

B. Vacherie, J. Aury, Benjamin Noel, 2022 .

Large genomic variants reveal unexplored intraspecific diversity in Brassica rapa genomes

G. Trotoux, J. Aury, Caroline Belser, 2020, bioRxiv.

Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

P. Wincker, V. Barbe, C. Cruaud, 2022, BMC Genomics.

Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

P. Wincker, V. Barbe, C. Cruaud, 2021, bioRxiv.

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps

F. Denoeud, P. Wincker, V. Barbe, 2018, Nature Plants.

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

Hadi Quesneville, Franck Salin, Karine Labadie, 2016, Molecular ecology resources.

Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data

P. Wincker, J. Aury, C. Cruaud, 2014, BMC Genomics.

Population genomics of apricots unravels domestication history and adaptive events

P. Wincker, M. Nikolski, T. Giraud, 2021, Nature Communications.

Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

P. Wincker, J. Aury, C. Cruaud, 2021, bioRxiv.

Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case

P. Wincker, J. Aury, C. Cruaud, 2021, Biology.

Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing

P. Wincker, A. Lemainque, J. Aury, 2021, Communications Biology.

Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa

G. Trotoux, J. Aury, Caroline Belser, 2020, Frontiers in Plant Science.

Improving Bionano scaffolding with BiSCoT

Benjamin Istace, Jean-Marc Aury, Caroline Belser, 2019 .

BiSCoT: improving large eukaryotic genome assemblies with optical maps

Benjamin Istace, Jean-Marc Aury, Caroline Belser, 2019, bioRxiv.

Long-read assembly of the Brassica napus reference genome Darmor-bzh

Corinne Da Silva, F. Denoeud, P. Wincker, 2020, bioRxiv.

Transcriptomic plasticity and symbiont shuffling underpin Pocillopora acclimatization across heat-stress regimes in the Pacific Ocean

J. Poulain, P. Wincker, J. Aury, 2021, bioRxiv.

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

H. Quesneville, J. Aury, Florent Murat, 2015, BMC Genomics.

Draft Genome Sequence of Tubulinosema ratisbonensis, a Microsporidian Species Infecting the Model Organism Drosophila melanogaster

A. Couloux, K. Labadie, C. Gaspin, 2019, Microbiology Resource Announcements.

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

J. Aury, K. Labadie, Q. Rougemont, 2018, bioRxiv.

Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA

J. Poulain, P. Wincker, Caroline Belser, 2021, Scientific Reports.

Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria and Archaea Along a Mediterranean—Atlantic Gradient

J. Poulain, P. Wincker, S. Pesant, 2021, Frontiers in Microbiology.

A cross-biomes bacterial diversity shed light on ocean-atmosphere microbial transmission

S. Sunagawa, J. Poulain, P. Wincker, 2021, bioRxiv.

Airborne bacteria over the oceans shed light on global biogeodiversity patterns

S. Sunagawa, J. Poulain, P. Wincker, 2021 .

Unzipped assemblies of polyploid root-knot nematode genomes reveal new kinds of unilateral composite telomeric repeats

E. Danchin, P. Wincker, J. Aury, 2023, bioRxiv.

Epigenomic and structural events preclude recombination in Brassica napus.

G. Trotoux, J. Aury, Caroline Belser, 2022, The New phytologist.

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

J. Marden, P. Wincker, J. Oakeshott, 2017, Scientific Reports.

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

H. Quesneville, J. Aury, Florent Murat, 2015, BMC Genomics.

Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean

S. Sunagawa, J. Poulain, P. Wincker, 2023, Nature communications.

From genome wide SNPs to genomic islands of differentiation: the quest for species diagnostic markers in two scleractinian corals, Pocillopora and Porites

S. Sunagawa, J. Poulain, P. Wincker, 2022, bioRxiv.

Genome assembly using Nanopore-guided long and error-free DNA reads

P. Wincker, A. Lemainque, J. Aury, 2015, BMC Genomics.

Diversity of the Pacific Ocean coral reef microbiome

S. Sunagawa, J. Poulain, P. Wincker, 2023, Nature communications.

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

J. Marden, P. Wincker, J. Oakeshott, 2017, Scientific Reports.

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

Robert P. Davey, Robert M. Waterhouse, Peter W. Harrison, 2024, bioRxiv.

Chromosome-scale assembly of the yellow mealworm genome

B. Vacherie, J. Aury, Benjamin Noel, 2021, Open research Europe.

The Silene latifolia genome and its giant Y chromosome

Daniel B. Sloan, Xiaodong Liu, C. Lemaitre, 2023, bioRxiv.