S. Yokoyama

发表

Molecular evolution of vertebrate visual pigments

S. Yokoyama, 2000, Progress in Retinal and Eye Research.

The "five-sites" rule and the evolution of red and green color vision in mammals.

S. Yokoyama, F. Radlwimmer, 1998, Molecular biology and evolution.

Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes

Morgan Park, R. Blakesley, M. Martindale, 2012, BMC Biology.

ADAPTIVE EVOLUTION OF PHOTORECEPTORS AND VISUAL PIGMENTS IN VERTEBRATES

S. Yokoyama, R. Yokoyama, 1996 .

Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrates

Huan Zhang, S. Yokoyama, T. Tada, 2008, Proceedings of the National Academy of Sciences.

Molecular evolution of color vision in vertebrates.

S. Yokoyama, 2002, Gene.

Evolution of dim-light and color vision pigments.

S. Yokoyama, 2008, Annual review of genomics and human genetics.

Role of cryptic genes in microbial evolution.

B. Hall, S. Yokoyama, D. Calhoun, 1983, Molecular biology and evolution.

Cloning of the rhodopsin-encoding gene from the rod-less lizard Anolis carolinensis.

S. Kawamura, S. Yokoyama, 1994, Gene.

Epistatic Adaptive Evolution of Human Color Vision

Yang Liu, S. Yokoyama, A. Altun, 2014, PLoS genetics.

The cone visual pigments of an Australian marsupial, the tammar wallaby (Macropus eugenii): sequence, spectral tuning, and evolution.

S. Deeb, M. Wakefield, S. Yokoyama, 2003, Molecular biology and evolution.

Color vision of the coelacanth (Latimeria chalumnae) and adaptive evolution of rhodopsin (RH1) and rhodopsin-like (RH2) pigments.

S. Yokoyama, 2000, The Journal of heredity.

Molecular characterization of the pigeon P-opsin gene.

S. Kawamura, S. Yokoyama, 1996, Gene.

Regeneration of ultraviolet pigments of vertebrates

S. Kawamura, S. Yokoyama, F. Radlwimmer, 1998, FEBS letters.

MODE OF ERUPTION AND VOLCANIC HISTORY OF MUKAIYAMA VOLCANO, NII-JIMA

S. Yokoyama, T. Tokunaga, 1979 .

Preliminary Report of the 1977 Eruption of Usu Volcano

T. Uda, S. Yokoyama, H. Katagawa, 1978 .

The genes for human alcohol dehydrogenases beta 1 and beta 2 differ by only one nucleotide.

Y. Matsuo, S. Yokoyama, R. Yokoyama, 1989, European journal of biochemistry.

Genetic Basis of Spectral Tuning in the Violet-Sensitive Visual Pigment of African Clawed Frog, Xenopus laevis

S. Yokoyama, Yusuke Takahashi, 2005, Genetics.

Molecules, biodiversity, and adaptive evolution.

S. Yokoyama, 2005, The Journal of heredity.

The spectral tuning in the short wavelength-sensitive type 2 pigments.

S. Yokoyama, T. Tada, 2003, Gene.

The molecular genetics of red and green color vision in mammals.

S. Yokoyama, F. Radlwimmer, S Yokoyama, 1999, Genetics.

Molecular evolution of human visual pigment genes.

S. Yokoyama, R. Yokoyama, S Yokoyama, 1989, Molecular biology and evolution.

Molecular genetics and the evolution of ultraviolet vision in vertebrates

S. Yokoyama, F. Radlwimmer, Yongsheng Shi, 2001, Proceedings of the National Academy of Sciences of the United States of America.

The molecular genetics and evolution of red and green color vision in vertebrates.

S. Yokoyama, F. Radlwimmer, S Yokoyama, 2001, Genetics.

Molecular analysis of the evolutionary significance of ultraviolet vision in vertebrates

S. Yokoyama, Yongsheng Shi, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Genetic analyses of the green visual pigments of rabbit (Oryctolagus cuniculus) and rat (Rattus norvegicus).

S. Yokoyama, F. Radlwimmer, 1998, Gene.

Color tuning in short wavelength-sensitive human and mouse visual pigments: ab initio quantum mechanics/molecular mechanics studies.

Keiji Morokuma, Shozo Yokoyama, K. Morokuma, 2009, The journal of physical chemistry. A.

Mechanism of spectral tuning going from retinal in vacuo to bovine rhodopsin and its mutants: multireference ab initio quantum mechanics/molecular mechanics studies.

Keiji Morokuma, Shozo Yokoyama, K. Morokuma, 2008, The journal of physical chemistry. B.

Spectral tuning in visual pigments: an ONIOM(QM:MM) study on bovine rhodopsin and its mutants.

Keiji Morokuma, Shozo Yokoyama, K. Morokuma, 2008, The journal of physical chemistry. B.

H-bond network around retinal regulates the evolution of ultraviolet and violet vision.

K. Morokuma, S. Yokoyama, A. Altun, 2011, ACS chemical biology.

Quantum mechanical/molecular mechanical structure, enantioselectivity, and spectroscopy of hydroxyretinals and insights into the evolution of color vision in small white butterflies.

K. Morokuma, S. Yokoyama, Sivakumar Sekharan, 2011, The journal of physical chemistry. B.

Convergent evolution of the red- and green-like visual pigment genes in fish, Astyanax fasciatus, and human.

S. Yokoyama, R. Yokoyama, 1990, Proceedings of the National Academy of Sciences of the United States of America.

Quantum Mechanical/Molecular Mechanical Studies on Spectral Tuning Mechanisms of Visual Pigments and Other Photoactive Proteins †

Keiji Morokuma, Shozo Yokoyama, K. Morokuma, 2008, Photochemistry and photobiology.

Molecular mechanism of long-range synergetic color tuning between multiple amino acid residues in conger rhodopsin

Hiroshi C. Watanabe, T. Yamato, S. Yokoyama, 2010, Biophysics.

Chapter 6 Comparative molecular biology of visual pigments

S. Yokoyama, R. Yokoyama, 2000 .

Molecular genetic basis of adaptive selection: examples from color vision in vertebrates.

S. Yokoyama, S Yokoyama, 1997, Annual review of genetics.

Mutagenesis and reconstitution of middle-to-long-wave-sensitive visual pigments of New World monkeys for testing the tuning effect of residues at sites 229 and 233

C. Hiramatsu, S. Kawamura, S. Yokoyama, 2004, Vision Research.

Adaptive evolution of color vision of the Comoran coelacanth (Latimeria chalumnae).

N. Blow, S. Yokoyama, F. Radlwimmer, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Possible Roles of New Mutations Shared by Asian and American Zika Viruses

S. Yokoyama, W. T. Starmer, 2017, Molecular biology and evolution.

A simple method for studying the molecular mechanisms of ultraviolet and violet reception in vertebrates

S. Yokoyama, A. Altun, T. Tada, 2016, BMC Evolutionary Biology.

Extraordinarily low evolutionary rates of short wavelength-sensitive opsin pseudogenes.

Yang Liu, S. Yokoyama, W. T. Starmer, 2014, Gene.

Molecular evolution and phylogeny of the human AIDS viruses LAV, HTLV-III, and ARV

T. Gojobori, S. Yokoyama, 2005, Journal of Molecular Evolution.

Phylogeny and evolutionary rates of G protein α subunit genes

S. Yokoyama, W. T. Starmer, 1992, Journal of Molecular Evolution.

Molecular evolution of the cone visual pigments in the pure rod-retina of the nocturnal gecko, Gekko gekko.

N. Blow, S. Yokoyama, Nathan S. Blow, 2001, Gene.

Isolation, DNA sequence and evolution of a color visual pigment gene of the blind cave fish Astyanax fasc1atus

S. Yokoyama, R. Yokoyama, 1990, Vision Research.

Molecular evolution of the zinc-containing long-chain alcohol dehydrogenase genes.

S. Yokoyama, R. Yokoyama, D. Harry, 1990, Molecular biology and evolution.

Adaptive evolution of G-protein coupled receptor genes.

K. Isenberg, A. Wright, S. Yokoyama, 1989, Molecular biology and evolution.

Molecular evolution of the human and simian immunodeficiency viruses.

S. Yokoyama, 1988, Molecular biology and evolution.

Molecular evolution of the human immunodeficiency and related viruses.

T. Gojobori, S. Yokoyama, L. Chung, 1988, Molecular biology and evolution.

Molecular characterization of cDNA clones encoding the human alcohol dehydrogenase β1 and the evolutionary relationship to the other Class I subunits α and γ

P. Rotwein, S. Yokoyama, R. Yokoyama, 1987 .

Molecular characterization of the red visual pigment gene of the American chameleon (Anolis carolinensis)

S. Kawamura, S. Yokoyama, 1993, FEBS letters.

Evolutionary dynamics of rhodopsin type 2 opsins in vertebrates.

S. Yokoyama, T. Tada, 2010, Molecular biology and evolution.

Genetic analyses of visual pigments of the pigeon (Columba livia).

N. Blow, S. Kawamura, S. Yokoyama, 1999, Genetics.

Molecular evolutionary rates of oncogenes

T. Gojobori, S. Yokoyama, 2005, Journal of Molecular Evolution.

Genetics and evolution of ultraviolet vision in vertebrates

S. Yokoyama, Yongsheng Shi, 2000, FEBS letters.

Rates of evolution of the retroviral oncogene of Moloney murine sarcoma virus and of its cellular homologues.

T. Gojobori, S. Yokoyama, 1985, Proceedings of the National Academy of Sciences of the United States of America.

Adaptive evolutionary paths from UV reception to sensing violet light by epistatic interactions

Yang Liu, Shozo Yokoyama, William T. Starmer, 2015, Science Advances.

Synthesis of Experimental Molecular Biology and Evolutionary Biology: An Example from the World of Vision

S. Yokoyama, 2012, Bioscience.

Evaluating adaptive evolution

S. Yokoyama, 2002, Nature Genetics.

Adaptive evolution of the African and Indonesian coelacanths to deep-sea environments.

S. Yokoyama, T. Tada, Shozo Yokoyama, 2000, Gene.

Rhodopsin from the fish, Astyanax: role of tyrosine 261 in the red shift.

S. Yokoyama, R. Yokoyama, B. Knox, 1995, Investigative ophthalmology & visual science.

Ultraviolet pigments in birds evolved from violet pigments by a single amino acid change.

N. Blow, S. Yokoyama, F. Radlwimmer, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Molecular Basis of Spectral Tuning in the Red- and Green-Sensitive (M/LWS) Pigments in Vertebrates

S. Yokoyama, W. T. Starmer, Hui Yang, 2008, Genetics.

Mechanisms of spectral tuning in the RH2 pigments of Tokay gecko and American chameleon.

Naomi Takenaka, S. Yokoyama, 2007, Gene.

Visual Pigment Genes: Evolution

S. Yokoyama, 2006 .

Tertiary structure and spectral tuning of UV and violet pigments in vertebrates.

S. Yokoyama, W. T. Starmer, T. Tada, 2006, Gene.

Phylogenetic analysis and experimental approaches to study color vision in vertebrates.

S. Yokoyama, 2000, Methods in enzymology.

Molecular convergence of infrared vision in snakes.

S. Yokoyama, A. Altun, D. DeNardo, 2011, Molecular biology and evolution.

Evolutionary replacement of UV vision by violet vision in fish

S. Yokoyama, A. Altun, T. Tada, 2009, Proceedings of the National Academy of Sciences.

A novel spectral tuning in the short wavelength-sensitive (SWS1 and SWS2) pigments of bluefin killifish (Lucania goodei).

N. Blow, Naomi Takenaka, S. Yokoyama, 2007, Gene.

Modulation of the Absorption Maximum of Rhodopsin by Amino Acids in the C‐terminus †

T. Yamato, S. Yokoyama, T. Tada, 2007, Photochemistry and photobiology.

The Evolution of Ultraviolet Vision in Vertebrates

S. Yokoyama, T. Tada, 2007 .

The molecular basis of adaptive evolution of squirrelfish rhodopsins.

Naomi Takenaka, S. Yokoyama, 2004, Molecular biology and evolution.

Molecular evolution of color vision of zebra finch.

N. Blow, S. Yokoyama, F. Radlwimmer, 2000, Gene.

Functional characterization of visual and nonvisual pigments of American chameleon (Anolis carolinensis)

S. Kawamura, S. Yokoyama, 1998, Vision Research.

Amino acid replacements and wavelength absorption of visual pigments in vertebrates.

S. Yokoyama, Shozo Yokoyama, 1995, Molecular biology and evolution.

Gene duplications and evolution of the short wavelength-sensitive visual pigments in vertebrates.

S. Yokoyama, Shozo Yokoyama, 1994, Molecular biology and evolution.

Elephants and Human Color-Blind Deuteranopes Have Identical Sets of Visual Pigments Sequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY686752, AY686753, AY686754.

Shozo Yokoyama, Naomi Takenaka, S. Yokoyama, 2005, Genetics.

Origin and adaptation of green‐sensitive (RH2) pigments in vertebrates

S. Yokoyama, H. Jia, 2020, FEBS open bio.

Molecular bases of color vision in vertebrates.

S. Yokoyama, 1999, Genes & genetic systems.

Phylogenetic Relationships among Short Wavelength-sensitive Opsins of American Chameleon (Anolis carolinensis) and Other Vertebrates

S. Kawamura, S. Yokoyama, 1996, Vision Research.

Molecular phylogeny and evolutionary rates of alcohol dehydrogenases in vertebrates and plants.

S. Yokoyama, D. Harry, 1993, Molecular biology and evolution.

Molecular evolution of mammalian class I alcohol dehydrogenase.

S. Yokoyama, R. Yokoyama, 1987, Molecular biology and evolution.

Genomic and spectral analyses of long to middle wavelength-sensitive visual pigments of common marmoset (Callithrix jacchus).

M. Hirai, S. Kawamura, S. Yokoyama, 2001, Gene.

Cloning and expression of the red visual pigment gene of goat (Capra hircus).

S. Yokoyama, F. Radlwimmer, 1997, Gene.

Synthetic biology of phenotypic adaptation in vertebrates: the next frontier.

S. Yokoyama, 2013, Molecular biology and evolution.

Molecular evolution of retinal and nonretinal opsins

S. Yokoyama, 1996, Genes to cells : devoted to molecular & cellular mechanisms.

The genes for human alcohol dehydrogenases β1 and β2 differ by only one nucleotide

Y. Matsuo, S. Yokoyama, R. Yokoyama, 1989 .

Multiple origins of the green-sensitive opsin genes in fish

S. Yokoyama, R. Yokoyama, E. Register, 1994, Journal of Molecular Evolution.

Molecular characterization of a blue visual pigment gene in the fish Astyanax fasciatus

S. Yokoyama, R. Yokoyama, 1993, FEBS letters.

Initial mutational steps toward loss of opsin gene function in cavefish.

S. Yokoyama, R. Yokoyama, H. Wilkens, 1995, Molecular biology and evolution.

Molecular characterization of a class IV human alcohol dehydrogenase gene (ADH7)

Y. Matsuo, S. Yokoyama, R. Yokoyama, 1994, FEBS letters.

Rapid formation of river terraces in non-welded ignimbrite along the Hishida River, Kyushu, Japan

S. Yokoyama, 1999 .

Spectral Tuning of Phototaxis by a Go-Opsin in the Rhabdomeric Eyes of Platynereis

N. Randel, G. Jékely, C. Verasztó, 2015, Current Biology.

Ciliary and rhabdomeric photoreceptor-cell circuits form a spectral depth gauge in marine zooplankton

Vinoth Babu Veedin Rajan, N. Randel, G. Jékely, 2018, bioRxiv.

Spectral Tuning of Photota xis by a Go-Opsin in the Rhabdomeric Eyes of Platynereis Graphical

N. Randel, G. Jékely, C. Verasztó, 2015 .

Paralogous origin of the red- and green-sensitive visual pigment genes in vertebrates.

S. Yokoyama, W. T. Starmer, R. Yokoyama, 1993, Molecular biology and evolution.

Expression of visual and nonvisual opsins in American chameleon

S. Kawamura, S. Yokoyama, 1997, Vision Research.

Multiple Levels of Redundant Processes Inhibit Caenorhabditis elegans Vulval Cell Fates

B. Yandell, H. Horvitz, M. Slatkin, 2008, Genetics.

Paralogous origin of the rhodopsinlike opsin genes in lizards

Shoji Kawamura, Shozo Yokoyama, S. Kawamura, 1995, Journal of Molecular Evolution.

Molecular structure of the human alcohol dehydrogenase 3 gene

Y. Matsuo, S. Yokoyama, R. Yokoyama, 1992 .

Cloning and characterization of the pineal gland-specific opsin gene of marine lamprey (Petromyzon marinus).

S. Yokoyama, H. Zhang, Shozo Yokoyama, 1997, Gene.

Functional characterization of visual and nonvisual pigments of American chameleon (Anolis carolinensis)

S. Kawamura, S. Yokoyama, 1998, Vision Research.

Evolutionary dynamics of rhodopsin type 2 opsins in vertebrates.

S. Yokoyama, T. Tada, 2010, Molecular biology and evolution.

Statistical and molecular analyses of evolutionary significance of red-green color vision and color blindness in vertebrates.

Naomi Takenaka, S. Yokoyama, 2005, Molecular biology and evolution.

Erosion rates of waterfalls in post‐volcanic fluvial systems around Aso volcano, southwestern Japan

Y. Hayakawa, S. Yokoyama, Y. Matsukura, 2008 .

Naomi Takenaka, S. Yokoyama, J. Shoshani, 2005, Genetics.