Daipayan Sarkar

发表

Non-invasive, transient determination of the core temperature of a heat-generating solid body

A. Jain, D. Anthony, Daipayan Sarkar, 2016, Scientific Reports.

Computational structure modeling for diverse categories of macromolecular interactions.

Charles W Christoffer, D. Kihara, Eman Alnabati, 2020, Current opinion in structural biology.

Data-guided Multi-Map variables for ensemble refinement of molecular movies.

R. Skeel, A. Singharoy, Daipayan Sarkar, 2020, The Journal of chemical physics.

General solutions to temperature distribution in orthotropic systems subject to variable heat transfer and biological systems during bioheat transfer

Daipayan Sarkar, 2016 .

CryoFold: determining protein structures and ensembles from cryo-EM data

Nicholas J. Sisco, K. Dill, D. Kihara, 2019, bioRxiv.

The ugly, bad, and good stories of large-scale biomolecular simulations.

D. Tieleman, A. Singharoy, Daipayan Sarkar, 2022, Current opinion in structural biology.

Steady state and transient analytical modeling of non-uniform convective cooling of a microprocessor chip due to jet impingement

Daipayan Sarkar, Ankur Jain, A. Jain, 2017 .

Corrections for lateral conduction error in steady state heat transfer measurements

R. Goldstein, A. Jain, V. Srinivasan, 2016 .

Contactless, non-intrusive core temperature measurement of a solid body in steady-state

A. Jain, D. Anthony, Daipayan Sarkar, 2016 .

CryoFold: determining protein structures and data-guided ensembles from cryo-EM density maps.

Nicholas J. Sisco, D. Kihara, E. Tajkhorshid, 2021, Matter.

ChAdOx1 interacts with CAR and PF4 with implications for thrombosis with thrombocytopenia syndrome

Eric A. Wilson, P. Fromme, M. Borad, 2021, Science advances.

The Structure of ChAdOx1/AZD-1222 Reveals Interactions with CAR and PF4 with Implications for Vaccine-induced Immune Thrombotic Thrombocytopenia

Chun Kit Chan, Eric A. Wilson, P. Fromme, 2021, bioRxiv.

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

Christopher J. Williams, Soon Wen Hoh, Colin M. Palmer, 2021, Nature Methods.

Outcomes of the 2019 EMDataResource model challenge: validation of cryo-EM models at near-atomic resolution

Genki Terashi, Daisuke Kihara, Grigore D. Pintilie, 2020, bioRxiv.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Jeffrey J. Gray, Panagiotis I. Koukos, Johnathan D. Guest, 2021, Proteins.

LongBondEliminator: A Molecular Simulation Tool to Remove Ring Penetrations in Biomolecular Simulation Systems

Daipayan Sarkar, J. Vermaas, M. Kulke, 2023, Biomolecules.

Thermal conduction in an orthotropic sphere with circumferentially varying convection heat transfer

A. Haji-sheikh, A. Jain, Daipayan Sarkar, 2016 .

Atomistic Origins of Biomass Recalcitrance in Organosolv Pretreatment

Daipayan Sarkar, J. Vermaas, Ian J. Santiago, 2023, Chemical Engineering Science.

Diffusion in intact secondary cell wall models of plants at different equilibrium moisture content.

Peter N. Ciesielski, L. Bu, M. Crowley, 2023, Cell surface.

Genotype & Phenotype in Lowe Syndrome: Specific OCRL1 patient mutations differentially impact cellular phenotypes

D. Kihara, T. Hazbun, Genki Terashi, 2020, bioRxiv.

Genotype & Phenotype in Lowe Syndrome: Specific OCRL1 patient mutations differentially impact cellular phenotypes

D. Kihara, T. Hazbun, Genki Terashi, 2020, bioRxiv.

Analytical modeling of temperature distribution in an anisotropic cylinder with circumferentially-varying convective heat transfer

A. Haji-sheikh, A. Jain, K. Shah, 2014 .

Data-guided Multi-Map variables for ensemble refinement of molecular movies

R. Skeel, A. Singharoy, Daipayan Sarkar, 2020, bioRxiv.

Exploring cryo-electron microscopy with molecular dynamics.

A. Singharoy, Daipayan Sarkar, J. Vermaas, 2022, Biochemical Society transactions.

Non-Arrhenius Reaction-Diffusion Kinetics for Protein Inactivation over a Large Temperature Range.

P. Kang, Zhenpeng Qin, Daipayan Sarkar, 2019, ACS nano.

Flexible Fitting of Small Molecules into Electron Microscopy Maps Using Molecular Dynamics Simulations with Neural Network Potentials

Christopher N Rowley, Daipayan Sarkar, Sumit Mittal, 2020, J. Chem. Inf. Model..

Molecular Dynamics Flexible Fitting: All You Want to Know About Resolution Exchange.

Daipayan Sarkar, Abhishek Singharoy, John W Vant, 2020, Methods in molecular biology.

Adaptive Ensemble Refinement of Protein Structures in High Resolution Electron Microscopy Density Maps with Radical Augmented Molecular Dynamics Flexible Fitting

S. Jha, M. Turilli, A. Singharoy, 2023, bioRxiv.

Adaptive Ensemble Refinement of Protein Structures in High Resolution Electron Microscopy Density Maps with Radical Augmented Molecular Dynamics Flexible Fitting

S. Jha, M. Turilli, A. Singharoy, 2021, bioRxiv.

CryoFold: Ab-initio structure determination from electron density maps using molecular dynamics

Genki Terashi, Daisuke Kihara, Petra Fromme, 2019 .

Large-Scale Molecular Dynamics Simulations of Cellular Compartments.

Eric A. Wilson, S. Jha, M. Turilli, 2021, Methods in molecular biology.

Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study

Charles W Christoffer, H. Wolfson, O. Schueler‐Furman, 2023, Proteomics.

Mind reading of the proteins: Deep-learning to forecast molecular dynamics

Daipayan Sarkar, John Kevin Cava, Abhishek Singharoy, 2020, bioRxiv.

Temperature distribution in multi-layer skin tissue in presence of a tumor

Daipayan Sarkar, Ankur Jain, A. Haji-sheikh, 2015 .

Adaptive Ensemble Refinement of Protein Structures in High Resolution Electron Microscopy Density Maps with Flexible Fitting via Ensemble Toolkit

S. Jha, M. Turilli, A. Singharoy, 2023 .

CryoFold: determining protein structures and data-guided ensembles from cryo-EM density maps.

Nicholas J. Sisco, D. Kihara, E. Tajkhorshid, 2021, Matter.

Non-Arrhenius Reaction-Diffusion Kinetics for Protein Inactivation over a Large Temperature Range.

P. Kang, Zhenpeng Qin, Daipayan Sarkar, 2019, ACS nano.

Structural Remodeling of Fungal Cell Wall Promotes Resistance to Echinocandins

J. Latgé, Daipayan Sarkar, J. Vermaas, 2023, bioRxiv.

ChAdOx 1 interacts with CAR and PF 4 with implications for thrombosis with thrombocytopenia syndrome

M. Borad, A. Singharoy, P. Rizkallah, 2023 .

Increasing thermostability of the key photorespiratory enzyme glycerate 3-kinase by structure-based recombination.

Daipayan Sarkar, A. Liepman, Berkley J. Walker, 2024, Plant biotechnology journal.