Sagi Snir

发表

Restricting SBH Ambiguity via Restriction Enzymes

Steven Skiena, Sagi Snir, 2002, WABI.

Convex recolorings of strings and trees: Definitions, hardness results and algorithms

Sagi Snir, Shlomo Moran, 2008, J. Comput. Syst. Sci..

Gene-Gene Interactions Detection Using a Two-Stage Model

Sagi Snir, Eleazar Eskin, José Antonio Lozano, 2014, RECOMB.

Fast and reliable reconstruction of phylogenetic trees with very short edges

Sagi Snir, Shlomo Moran, Ilan Gronau, 2008, SODA '08.

Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis

Sagi Snir, Sébastien Roch, 2012, RECOMB.

Bounds on Identification of Genome Evolution Pacemakers

Sagi Snir, S. Snir, 2019, ISBRA.

A Linear Time Approximation Scheme for Maximum Quartet Consistency on Sparse Sampled Inputs

Raphael Yuster, Sagi Snir, 2011, APPROX-RANDOM.

Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes

Sagi Snir, Eleazar Eskin, Buhm Han, 2017, bioRxiv.

Multi-SpaM: A Maximum-Likelihood Approach to Phylogeny Reconstruction Using Multiple Spaced-Word Matches and Quartet Trees

Sagi Snir, Burkhard Morgenstern, Christoph Bleidorn, 2018, RECOMB-CG.

Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes

Lior Pachter, Sagi Snir, 2006, RECOMB.

Universal Pacemaker of Genome Evolution

Sagi Snir, Eugene V. Koonin, Yuri I. Wolf, 2012, PLoS Comput. Biol..

Maximum Likelihood Molecular Clock Comb: Analytic Solutions

Sagi Snir, Benny Chor, Amit Khetan, 2006, J. Comput. Biol..

The Homology Kernel: A Biologically Motivated Sequence Embedding into Euclidean Space

Sagi Snir, Eleazar Eskin, E. Eskin, 2005, 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

On the number of genomic pacemakers: a geometric approach

Sagi Snir, S. Snir, 2014, Algorithms for Molecular Biology.

A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging

Sagi Snir, Matteo Pellegrini, Bridgett M. vonHoldt, 2016, PLoS Comput. Biol..

Prokaryotic evolutionary mechanisms accelerate learning

Sagi Snir, Ben Yohay, S. Snir, 2019, Discret. Appl. Math..

Fast and reliable reconstruction of phylogenetic trees with indistinguishable edges

Sagi Snir, Shlomo Moran, Ilan Gronau, 2012, Random Struct. Algorithms.

Hadamard Conjugation for the Kimura 3ST Model: Combinatorial Proof Using Path Sets

Sagi Snir, Michael D. Hendy, M. Hendy, 2005, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Tracing the Most Parsimonious Indel History

Lior Pachter, Sagi Snir, 2011, J. Comput. Biol..

A New Quartet-Based Statistical Method for Comparing Sets of Gene Trees Is Developed Using a Generalized Hoeffding Inequality

Sagi Snir, Eliran Avni, S. Snir, 2019, J. Comput. Biol..

‘Multi-SpaM’: a maximum-likelihood approach to phylogeny reconstruction using multiple spaced-word matches and quartet trees

Sagi Snir, Burkhard Morgenstern, Christoph Bleidorn, 2019, NAR genomics and bioinformatics.

Extending the Evolvability Model to the Prokaryotic World: Simulations and Results on Real Data

Sagi Snir, Ben Yohay, 2019, J. Comput. Biol..

Efficient Approximation of Convex Recolorings

Sagi Snir, Shlomo Moran, 2005, APPROX-RANDOM.

Simple and efficient network decomposition and synchronization

Sagi Snir, Shlomo Moran, 2000, Theor. Comput. Sci..

Reconstructing Approximate Phylogenetic Trees from Quartet Samples

Raphael Yuster, Sagi Snir, 2010, SODA.

Reconstructing approximate phylogenetic trees from quartet samples

Raphael Yuster, Sagi Snir, R. Yuster, 2010, SODA '10.

Short Quartet Puzzling: A New Quartet-Based Phylogeny Reconstruction Algorithm

Satish Rao, Sagi Snir, Tandy J. Warnow, 2008, J. Comput. Biol..

On the Compatibility of Quartet Trees

Noga Alon, Raphael Yuster, Sagi Snir, 2014, SIAM J. Discret. Math..

A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance

Sagi Snir, Luay Nakhleh, Guohua Jin, 2007, ISBRA.

A Novel Technique for Detecting Putative Horizontal Gene Transfer in the Sequence Space

Sagi Snir, Edward N. Trifonov, E. Trifonov, 2010, J. Comput. Biol..

Extending the Evolvability Model to the Prokaryotic World: Simulations and Results on Real Data

Sagi Snir, Ben Yohay, S. Snir, 2018, ISBRA.

Using Semi-definite Programming to Enhance Supertree Resolvability

Satish Rao, Sagi Snir, Shlomo Moran, 2005, WABI.

A Linear Time Approximation Scheme for Maximum Quartet Consistency on Sparse Sampled Inputs

Raphael Yuster, Sagi Snir, R. Yuster, 2011, SIAM J. Discret. Math..

Bounds on Identification of Genome Evolution Pacemakers

Sagi Snir, 2018, ISBRA.

Detecting Horizontal Gene Transfer between Closely Related Taxa

Sagi Snir, Uri Gophna, Orit Adato, 2015, PLoS Comput. Biol..

Partial convex recolorings of trees and galled networks: Tight upper and lower bounds

Sagi Snir, Shlomo Moran, Wing-Kin Sung, 2011, TALG.

The Net-HMM Approach: Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models

Sagi Snir, Tamir Tuller, T. Tuller, 2009, J. Bioinform. Comput. Biol..

Gene-Gene Interactions Detection Using a Two-stage Model

Sagi Snir, Eleazar Eskin, José Antonio Lozano, 2015, J. Comput. Biol..

The Epigenetic Pacemaker: modeling epigenetic states under an evolutionary framework

Sagi Snir, Colin Farrell, Matteo Pellegrini, 2020, Bioinform..

Greedy Partition Distance Under Stochastic Models - Analytic Results

Sagi Snir, S. Snir, 2019, ISBRA.

Maximum likelihood of phylogenetic networks

Sagi Snir, Luay Nakhleh, Guohua Jin, 2007, Bioinform..

Efficient parsimony-based methods for phylogenetic network reconstruction

Sagi Snir, Luay Nakhleh, Guohua Jin, 2007, Bioinform..

Pacemaker Partition Identification

Sagi Snir, S. Snir, 2014, WABI.

Efficient approximation of convex recolorings pdf

Sagi Snir, Shlomo Moran, 2007, J. Comput. Syst. Sci..

Quartets MaxCut: A Divide and Conquer Quartets Algorithm

Satish Rao, Sagi Snir, Satish Rao, 2010, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis

Sagi Snir, Sébastien Roch, S. Roch, 2012, RECOMB.

Convex Recolorings of Strings and Trees: Definitions, Hardness Results and Algorithms

Sagi Snir, Shlomo Moran, 2005, WADS.

Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models

Sagi Snir, Tamir Tuller, T. Tuller, 2008, WABI.

Restricting SBH ambiguity via restriction enzymes

Steven Skiena, Sagi Snir, S. Skiena, 2002, Discret. Appl. Math..

Connected Coloring Completion for General Graphs: Algorithms and Complexity

Michael R. Fellows, Sagi Snir, Mark A. Ragan, 2007, COCOON.

Using Max Cut to Enhance Rooted Trees Consistency

Satish Rao, Sagi Snir, Satish Rao, 2006, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Maximum likelihood of phylogenetic networks

Sagi Snir, Luay Nakhleh, Guohua Jin, 2006, Bioinform..

Incorporating homologues into Sequence Embeddings for protein Analysis

Sagi Snir, Eleazar Eskin, 2007, J. Bioinform. Comput. Biol..

On the Compatibility of Quartet Trees

Noga Alon, Raphael Yuster, Sagi Snir, 2014, SIAM J. Discret. Math..

Maximum likelihood on four taxa phylogenetic trees: analytic solutions

Sagi Snir, Benny Chor, Amit Khetan, 2003, RECOMB '03.

Parsimony Score of Phylogenetic Networks: Hardness Results and a Linear-Time Heuristic

Sagi Snir, Luay Nakhleh, Guohua Jin, 2009, IEEE ACM Trans. Comput. Biol. Bioinform..

On the quartet distance given partial information pdf

Raphael Yuster, Sagi Snir, Osnat Weissberg, 2021, J. Graph Theory.

Stability along with Extreme Variability in Core Genome Evolution

Sagi Snir, Eugene V. Koonin, Yuri I. Wolf, 2013, Genome biology and evolution.

Parsimony Score of Phylogenetic Networks: Hardness Results and a Linear-Time Heuristic

Sagi Snir, Guohua Jin, Tamir Tuller, 2009, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Analytic solutions of maximum likelihood on forks of four taxa.

Sagi Snir, Benny Chor, B. Chor, 2007, Mathematical biosciences.

Using Restriction Enzymes to Improve Sequencing by Hybridization

Sagi Snir, Zohar Yakhini, Benny Chor, 2002 .

Algebraic Statistics for Computational Biology: Analysis of Point Mutations in Vertebrate Genomes

Sagi Snir, Jameel Al-Aidroos, 2005 .

Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems

Sagi Snir, Kira S. Makarova, Eugene V. Koonin, 2011, Journal of bacteriology.

Detecting horizontal gene transfer: a probabilistic approach

Sagi Snir, Orit Adato, S. Snir, 2020, BMC Genomics.

Efficient parsimony-based methods for phylogenetic network

Sagi Snir, Guohua Jin, Tamir Tuller, 2006 .

Maximum likelihood Jukes-Cantor triplets: analytic solutions.

Sagi Snir, Benny Chor, B. Chor, 2005, Molecular biology and evolution.

Molecular clock fork phylogenies: closed form analytic maximum likelihood solutions.

Sagi Snir, Benny Chor, B. Chor, 2004, Systematic biology.

Universal Pacemaker of Genome Evolution in Animals and Fungi and Variation of Evolutionary Rates in Diverse Organisms

Sagi Snir, Eugene V. Koonin, Yuri I. Wolf, 2014, Genome biology and evolution.

Phylo SI: a new genome-wide approach for prokaryotic phylogeny

Sagi Snir, Uri Gophna, Noga Ninyo, 2013, Nucleic acids research.

Human epigenetic ageing is logarithmic with time across the entire lifespan

Sagi Snir, Matteo Pellegrini, Colin Farrell, 2019, Epigenetics.

Triplet MaxCut: a new toolkit for rooted supertree

Sagi Snir, Zeev Frenkel, Z. Frenkel, 2016 .

Quartet MaxCut: a fast algorithm for amalgamating quartet trees.

Satish Rao, Sagi Snir, Satish Rao, 2012, Molecular phylogenetics and evolution.

Weighted quartets phylogenetics.

Sagi Snir, Eliran Avni, S. Snir, 2015, Systematic biology.

Convex Recolorings of Strings and Trees

Sagi Snir, Shlomo Moran, 2003 .