H. Rui

发表

Macropinocytosis and SARS-CoV-2 cell entry

Sun Xiaowei, Zheng Wenyue, H. Rui, 2021 .

CHARMM all-atom additive force field for sphingomyelin: elucidation of hydrogen bonding and of positive curvature.

Alexander D. MacKerell, Huan Rui, Jeffery B. Klauda, 2014, Biophysical journal.

Chemical substitutions in the selectivity filter of potassium channels do not rule out constricted-like conformations for C-type inactivation

B. Roux, E. Perozo, E. Boulanger, 2017, Proceedings of the National Academy of Sciences.

Mechanism of potassium ion uptake by the Na+/K+-ATPase

F. Bezanilla, R. Latorre, B. Roux, 2015, Nature Communications.

Protein Dynamics and Ion Traffic in Bacterioferritin Function: A Molecular Dynamics Simulation Study on wild‐type and Mutant Pseudomonas Aeruginosa BfrB

W. Im, M. Rivera, H. Rui, 2016 .

Modeling the CRL4A ligase complex to predict target protein ubiquitination induced by cereblon-recruiting PROTACs

Sara C. Humphreys, D. Daniels, M. Urh, 2022, The Journal of biological chemistry.

The association between RANK, RANKL and OPG gene polymorphisms and the risk of rheumatoid arthritis: a case-controlled study and meta-analysis

H. Rui, Hui Zhang, Xindie Zhou, 2019, Bioscience reports.

Open and closed structures of a barium-blocked potassium channel.

B. Roux, L. Blachowicz, H. Rui, 2020, Journal of molecular biology.

The selectivity of the Na+/K+-pump is controlled by binding site protonation and self-correcting occlusion

B. Roux, H. Rui, P. Artigas, 2016, eLife.

CHARMM‐GUI Membrane Builder toward realistic biological membrane simulations

Sunhwan Jo, Xi Cheng, Jumin Lee, 2014, J. Comput. Chem..

Conformational Transitions and Alternating-Access Mechanism in the Sarcoplasmic Reticulum Calcium Pump.

B. Roux, H. Rui, R. Nakamoto, 2017, Journal of molecular biology.

Structural and functional characterization of a calcium-activated cation channel from Tsukamurella paurometabola

B. Roux, L. Blachowicz, H. Rui, 2016, Nature Communications.

CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues.

Alexander D. MacKerell, Sunhwan Jo, Benoît Roux, 2014, Advances in protein chemistry and structural biology.

Gramicidin A Channel Formation Induces Local Lipid Redistribution I: Experiment and Simulation.

Andrew H. Beaven, W. Im, R. Pastor, 2017, Biophysical journal.

Cholesterol flip-flop: insights from free energy simulation studies.

Sunhwan Jo, Wonpil Im, Huan Rui, 2010, The journal of physical chemistry. B.

Novel free energy calculations to explore mechanisms and energetics of membrane protein structure and function

Taehoon Kim, Wonpil Im, Huan Rui, 2009, J. Comput. Chem..

Meta-analysis on the Association Between Norepinephrine Transporter Gene rs2242446, rs5569 Polymorphisms and Risk of Major Depressive Disorder.

H. Rui, Liqun Wang, Hongjia Qian, 2018, Archives of medical research.

Locking the Elbow: Improved Antibody Fab Fragments as Chaperones for Structure Determination.

A. Kossiakoff, Wei-Jen Tang, H. Rui, 2017, Journal of molecular biology.

Protein–protein interfaces in molecular glue-induced ternary complexes: classification, characterization, and prediction

Connie Y. Wang, Jaeki Min, H. Rui, 2023, RSC chemical biology.

Significantly improving enzymatic saccharification of high crystallinity index's corn stover by combining ionic liquid [Bmim]Cl-HCl-water media with dilute NaOH pretreatment.

Yucai He, Cui-Luan Ma, H. Rui, 2015, Bioresource technology.

Structural, NMR spectroscopic, and computational investigation of hemin loading in the hemophore HasAp from Pseudomonas aeruginosa.

W. Im, M. Rivera, H. Rui, 2010, Journal of the American Chemical Society.

Web interface for brownian dynamics simulation of ion transport and its applications to beta‐barrel pores

Sunhwan Jo, Benoît Roux, Wonpil Im, 2012, J. Comput. Chem..

Brownian dynamics simulations of ion transport through the VDAC.

Wonpil Im, Huan Rui, Kyu Il Lee, 2011, Biophysical journal.

Molecular dynamics studies of ion permeation in VDAC.

Wonpil Im, Huan Rui, Kyu Il Lee, 2011, Biophysical journal.

Improved biosynthesis of ethyl (S)-4-chloro-3-hydroxybutanoate by adding L-glutamine plus glycine instead of NAD+ in β-cyclodextrin-water system.

Yucai He, Yun Lu, H. Rui, 2015, Bioresource Technology.

CHARMM‐GUI 10 years for biomolecular modeling and simulation

Alexander D. MacKerell, Xi Cheng, Sunhwan Jo, 2017, J. Comput. Chem..

Concerted motions networking pores and distant ferroxidase centers enable bacterioferritin function and iron traffic.

W. Im, M. Rivera, H. Rui, 2015, Biochemistry.

Protein dynamics and ion traffic in bacterioferritin.

W. Im, M. Rivera, H. Rui, 2012, Biochemistry.

Protegrin‐1 orientation and physicochemical properties in membrane bilayers studied by potential of mean force calculations

Wonpil Im, Huan Rui, W. Im, 2010, J. Comput. Chem..

Proton Countertransport and Coupled Gating in the Sarcoplasmic Reticulum Calcium Pump.

B. Roux, H. Rui, R. Nakamoto, 2018, Journal of molecular biology.

Probing the U-shaped conformation of caveolin-1 in a bilayer.

Wonpil Im, Huan Rui, W. Im, 2014, Biophysical journal.

Crystal Structure and Conformational Dynamics of Pyrococcus furiosus Prolyl Oligopeptidase.

B. Roux, H. Rui, N. Sukumar, 2019, Biochemistry.

Affinity and cooperativity modulate ternary complex formation to drive targeted protein degradation

S. Ghimire-Rijal, H. Rui, D. Mohl, 2023, Nature communications.

Barium blockade of the KcsA channel in open and closed conformation datasets

B. Roux, L. Blachowicz, H. Rui, 2020, Data in brief.

Prokaryotic Expression, Purification and Identification of Human PDE9A Protein

H. Rui, Liqun Wang, 2018, Journal of Biology and Life Science.

Comparative molecular dynamics simulation studies of protegrin-1 monomer and dimer in two different lipid bilayers.

W. Im, Jinhyuk Lee, H. Rui, 2009, Biophysical journal.

Membrane tension, lipid adaptation, conformational changes, and energetics in MscL gating.

W. Im, H. Rui, Ritesh Kumar, 2011, Biophysical journal.

The association between RANK, RANKL and OPG gene polymorphisms and the risk of rheumatoid arthritis: a case-controlled study and meta-analysis

H. Rui, Hui Zhang, Xindie Zhou, 2019, Bioscience reports.