Qinghua Wang

发表

Atomistic simulations indicate the functional loop-to-coiled-coil transition in influenza hemagglutinin is not downhill

Jianpeng Ma, Jeffrey K. Noel, José N. Onuchic, 2018, Proceedings of the National Academy of Sciences.

Crystal Structure of Unliganded Influenza B Virus Hemagglutinin

Jianpeng Ma, Mingyang Lu, Qinghua Wang, 2008, Journal of Virology.

Structural and Functional Studies of Influenza Virus A/H6 Hemagglutinin

E. Kondrashkina, Qinghua Wang, F. Ni, 2015, PloS one.

Structural Insights into the Membrane Fusion Mechanism Mediated by Influenza Virus Hemagglutinin

Xiaorui Chen, Jun Shen, Qinghua Wang, 2014, Biochemistry.

Evolutionary Trends of A(H1N1) Influenza Virus Hemagglutinin Since 1918

Jianpeng Ma, Qinghua Wang, Jun Shen, 2009, PloS one.

Structural improvement of unliganded simian immunodeficiency virus gp120 core by normal-mode-based X-ray crystallographic refinement.

Jianpeng Ma, Mingyang Lu, B. Poon, 2009, Acta crystallographica. Section D, Biological crystallography.

Genome-wide polycomb target gene prediction in Drosophila melanogaster

Jianpeng Ma, J. Zeng, Qinghua Wang, 2012, Nucleic acids research.

OPUS-Mut: Studying the Effect of Protein Mutation through Side-Chain Modeling

Jianpeng Ma, Qinghua Wang, Gang Xu, 2022, bioRxiv.

OPUS-CSF: A C-atom-based Scoring Function for Ranking Protein Structural Models

Jianpeng Ma, Qinghua Wang, Tianwu Zang, 2017, bioRxiv.

Deformable complex network for refining low-resolution X-ray structures

Jianpeng Ma, Qinghua Wang, Chong Zhang, 2015, Acta crystallographica. Section D, Biological crystallography.

OPUS‐SSF: A side‐chain‐inclusive scoring function for ranking protein structural models

Jianpeng Ma, Qinghua Wang, Gang Xu, 2019, Protein science : a publication of the Protein Society.

Influenza antigenic drift: what is the driving force?

Qinghua Wang, 2010, Cellscience.

OPUS-DSD: Deep Structural Disentanglement for cryo-EM Single Particle Analysis

Jianpeng Ma, Qinghua Wang, F. Ni, 2022, bioRxiv.

The roles of hemagglutinin Phe-95 in receptor binding and pathogenicity of influenza B virus.

E. Kondrashkina, Qinghua Wang, F. Ni, 2014, Virology.

Sparseness and Smoothness Regularized Imaging for improving the resolution of Cryo-EM single-particle reconstruction

Jianpeng Ma, A. A. Campos-Acevedo, Qinghua Wang, 2021, Proceedings of the National Academy of Sciences.

Three classes of response elements for human PRC2 and MLL1/2–Trithorax complexes

Jianpeng Ma, J. Zeng, Qinghua Wang, 2017, bioRxiv.

Three classes of response elements for human PRC2 and MLL1/2-trithorax complexes

Jianpeng Ma, J. Zeng, Qinghua Wang, 2017, bioRxiv.

RICE UNIVERSITY By A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE APPROVED, THESIS COMMITTEE HOUSTON, TEXAS

Qinghua Wang, Tianqi Ma, 2021 .

OPUS‐CSF: A C‐atom‐based scoring function for ranking protein structural models

Jianpeng Ma, Tianwu Zang, Tianqi Ma, 2017, bioRxiv.

OPUS-DOSP: A Distance- and Orientation-Dependent All-Atom Potential Derived from Side-Chain Packing.

Jianpeng Ma, Weitao Sun, Tianwu Zang, 2017, Journal of molecular biology.

OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling.

Jianpeng Ma, Gang Xu, Qinghua Wang, 2020, Journal of chemical theory and computation.

OPUS-Rota2: An Improved Fast and Accurate Side-chain Modeling Method.

Jianpeng Ma, Tianqi Ma, Qinghua Wang, 2019, Journal of chemical theory and computation.

Order and disorder control the functional rearrangement of influenza hemagglutinin

J. Onuchic, Jianpeng Ma, J. Noel, 2014, Proceedings of the National Academy of Sciences.

Structure basis of neutralization by a novel site II/IV antibody against respiratory syncytial virus fusion protein

Jianpeng Ma, N. Patel, Zhao Wang, 2019, PloS one.

Lowered pH Leads to Fusion Peptide Release and a Highly Dynamic Intermediate of Influenza Hemagglutinin.

J. Onuchic, Jianpeng Ma, J. Noel, 2016, The journal of physical chemistry. B.

Structure of the full-length Shaker potassium channel Kv1.2 by normal-mode-based X-ray crystallographic refinement

Jianpeng Ma, Qinghua Wang, F. Ni, 2010, Proceedings of the National Academy of Sciences.

Structural basis for receptor specificity of influenza B virus hemagglutinin

Jianpeng Ma, Qinghua Wang, Xiaorui Chen, 2007, Proceedings of the National Academy of Sciences.

High-Potency Polypeptide-based Inhibition of Enveloped-virus Glycoproteins

Jianpeng Ma, Qinghua Wang, A. Acevedo, 2021, bioRxiv.

High-Potency Polypeptide-based Interference for Coronavirus Spike Glycoproteins

Jianpeng Ma, Qinghua Wang, A. Acevedo, 2021 .

Refining protein structures using enhanced sampling techniques with restraints derived from an ensemble‐based model

Jianpeng Ma, Qinghua Wang, Tianwu Zang, 2018, Protein science : a publication of the Protein Society.

Improving low-accuracy protein structures using enhanced sampling techniques.

Jianpeng Ma, Qinghua Wang, Tianwu Zang, 2018, The Journal of chemical physics.

OPUS-Refine: A Fast Sampling-based Framework for Refining Protein Backbone Torsion Angles and Global Conformation.

Jianpeng Ma, Qinghua Wang, Gang Xu, 2020, Journal of chemical theory and computation.

OPUS-X: an open-source toolkit for protein torsion angles, secondary structure, solvent accessibility, contact map predictions and 3D folding

Jianpeng Ma, Gang Xu, Qinghua Wang, 2021, Bioinform..

OPUS-X: an open-source toolkit for protein torsion angles, secondary structure, solvent accessibility, contact map predictions and 3D folding

Jianpeng Ma, Qinghua Wang, Gang Xu, 2021, bioRxiv.

Mechanisms of leiomodin 2-mediated regulation of actin filament in muscle cells

Jianpeng Ma, E. Kondrashkina, Qinghua Wang, 2015, Proceedings of the National Academy of Sciences.

OPUS-Fold3: a gradient-based protein all-atom folding and docking framework on TensorFlow

Jianpeng Ma, Qinghua Wang, Gang Xu, 2023, bioRxiv.

Molecular docking study of the interactions between the thioesterase domain of human fatty acid synthase and its ligands

Jianpeng Ma, Qinghua Wang, F. Quiocho, 2008, Proteins.

OPUS-Rota4: a gradient-based protein side-chain modeling framework assisted by deep learning-based predictors

Jianpeng Ma, Qinghua Wang, Gang Xu, 2021, bioRxiv.

Why are oseltamivir and zanamivir effective against the newly emerged influenza A virus (A/H1N1)?

Cheng Luo, Jianpeng Ma, Weiliang Zhu, 2009, Cell Research.

Order and disorder control the functional rearrangement of influenza hemagglutinin

J. Onuchic, Jianpeng Ma, J. Noel, 2014, Proceedings of the National Academy of Sciences.

OPUS-DOSP: A Distance- and Orientation-Dependent All-Atom Potential Derived from Side-Chain Packing.

Jianpeng Ma, Weitao Sun, Qinghua Wang, 2017, Journal of molecular biology.