Y. Tseng

发表

Development of antiviral carbon quantum dots that target the Japanese encephalitis virus envelope protein

W. Tzou, Han Chen, Chin-Jung Lin, 2022, The Journal of biological chemistry.

A matrix-induced ion suppression method to normalize concentration in urinary metabolomics studies using flow injection analysis electrospray ionization mass spectrometry.

Guan-Yuan Chen, C. Kuo, I-Lin Tsai, 2015, Analytica chimica acta.

Batch Normalizer: a fast total abundance regression calibration method to simultaneously adjust batch and injection order effects in liquid chromatography/time-of-flight mass spectrometry-based metabolomics data and comparison with current calibration methods.

C. Kuo, S. Wang, Y. Tseng, 2013, Analytical chemistry.

Characterization of a ligand-receptor binding event using receptor-dependent four-dimensional quantitative structure-activity relationship analysis.

A. Hopfinger, Y. Tseng, D. Pan, 2004, Journal of medicinal chemistry.

NP-StructurePredictor: Prediction of Unknown Natural Products in Plant Mixtures

Y. Tseng, Yeu-Chern Harn, Bo-Han Su, 2017, J. Chem. Inf. Model..

Steps Toward a Virtual Rat: Predictive Absorption, Distribution, Metabolism, and Toxicity Models

Y. Tseng, M. Hsu, Bo-Han Su, 2016 .

Categorical QSAR Models for skin sensitization based upon local lymph node assay classification measures part 2: 4D-fingerprint three-state and two-2-state logistic regression models.

Yi Li, Yufeng J Tseng, Dahua Pan, 2007, Toxicological sciences : an official journal of the Society of Toxicology.

A comprehensive support vector machine binary hERG classification model based on extensive but biased end point hERG data sets.

Bo-Han Su, Emilio Xavier Esposito, Yufeng J Tseng, 2011, Chemical research in toxicology.

Quantitative Structure‐Based Design: Formalism and Application of Receptor‐Dependent RD‐4D‐QSAR Analysis to a Set of Glucose Analogue Inhibitors of Glycogen Phosphorylase.

Anton J. Hopfinger, Yufeng J. Tseng, Dahua Pan, 2003 .

Metabolomics of ginger essential oil against alcoholic fatty liver in mice.

C. Kuo, S. Wang, Y. Tseng, 2013, Journal of agricultural and food chemistry.

Mass-Spectrometry-Based Serum Metabolomics of a C57BL/6J Mouse Model of High-Fat-Diet-Induced Non-alcoholic Fatty Liver Disease Development.

Chi-Tang Ho, C. Kuo, Y. Tseng, 2015, Journal of agricultural and food chemistry.

Metabolomic characterization of rhubarb species by capillary electrophoresis and ultra‐high‐pressure liquid chromatography

Guan-Yuan Chen, C. Kuo, Hsiao-Wei Liao, 2013, Electrophoresis.

Data and text mining CypRules : a rule-based P 450 inhibition prediction server

Y. Tseng, Bo-Han Su, O. A. Lin, 2015 .

Trowaglerix Venom Polypeptides As a Novel Antithrombotic Agent by Targeting Immunoglobulin-Like Domains of Glycoprotein VI in Platelet

C. Chung, Chien-Hsin Chang, Hui-Chin Peng, 2017, Arteriosclerosis, thrombosis, and vascular biology.

A novel thromboxane receptor antagonist, nstpbp5185, inhibits platelet aggregation and thrombus formation in animal models

Shu-Wha Lin, S. Kuo, Hui-Chin Peng, 2016, Thrombosis and Haemostasis.

Web Server for Peak Detection, Baseline Correction, and Alignment in Two-Dimensional Gas Chromatography Mass Spectrometry-Based Metabolomics Data.

Guan-Yuan Chen, C. Kuo, S. Wang, 2016, Analytical chemistry.

Quantum chemical investigation of the detection properties of alternariol and alternariol monomethyl ether

Y. Tseng, M. Appell, Y. Tu, 2019, Structural Chemistry.

Metabolomic Analysis of Complex Chinese Remedies: Examples of Induced Nephrotoxicity in the Mouse from a Series of Remedies Containing Aristolochic Acid

Guan-Yuan Chen, C. Kuo, I-Lin Tsai, 2013, Evidence-based complementary and alternative medicine : eCAM.

Database tool Human Breathomics Database

C. Kuo, Shu-Wen Lin, S. Wang, 2020 .

RSDB: A rare skin disease database to link drugs with potential drug targets for rare skin diseases

Pei-Hua Wang, Y. Tseng, Tien-Chueh Kuo, 2022, Scientific Data.

Mutagenicity in a Molecule: Identification of Core Structural Features of Mutagenicity Using a Scaffold Analysis

Y. Tseng, Bo-Han Su, O. A. Lin, 2016, PloS one.

Rapid determination of aristolochic acids I and II in herbal products and biological samples by ultra-high-pressure liquid chromatography-tandem mass spectrometry.

C. Kuo, I-Lin Tsai, Y. Tseng, 2010, Talanta.

Exploring Molecular Moieties on Carbonized Polymer Dots from Flavonoid Glycosides with Activity Against Enterovirus A71

S. G. Harroun, Shih-Chao Lin, Chin-Jung Lin, 2022, SSRN Electronic Journal.

Using precursor ion scan of 184 with liquid chromatography-electrospray ionization-tandem mass spectrometry for concentration normalization in cellular lipidomic studies.

Sung-Chun Tang, Guan-Yuan Chen, C. Kuo, 2017, Analytica chimica acta.

An efficient and robust fatty acid profiling method for plasma metabolomic studies by gas chromatography-mass spectrometry.

Chiun-Sheng Huang, Wei-Chih Liao, C. Kuo, 2015, Clinica chimica acta; international journal of clinical chemistry.

4D-QSAR Analysis of a Series of Antifungal P450 Inhibitors and 3D-Pharmacophore Comparisons as a Function of Alignment

Anton J. Hopfinger, Yufeng J. Tseng, Dahua Pan, 2003, J. Chem. Inf. Comput. Sci..

Synthesis and inhibitory effects of novel pyrimido-pyrrolo-quinoxalinedione analogues targeting nucleoproteins of influenza A virus H1N1.

Y. Tseng, Shi-Yun Wang, Wen-I Huang, 2015, European journal of medicinal chemistry.

Comparative studies of AlphaFold, RoseTTAFold and Modeller: a case study involving the use of G-protein-coupled receptors

Y. Tseng, Bo-Han Su, Chien-shiun Lee, 2022, Briefings Bioinform..

A pilot study of metabolomic pathways associated with fatigue in patients with colorectal cancer receiving chemotherapy.

K. Yeh, C. Kuo, S. Shun, 2022, European journal of oncology nursing : the official journal of European Oncology Nursing Society.

In Silico Binary Classification QSAR Models Based on 4D-Fingerprints and MOE Descriptors for Prediction of hERG Blockage

Bo-Han Su, Meng-yu Shen, Emilio Xavier Esposito, 2010, J. Chem. Inf. Model..

3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data

Yufeng J. Tseng, Tien-Chueh Kuo, Tze-Feng Tian, 2013, BMC Systems Biology.

Exosomal Proteins and Lipids as Potential Biomarkers for Lung Cancer Diagnosis, Prognosis, and Treatment

Y. Tseng, M. Hsu, Yu-ke Wang, 2022, Cancers.

Intelligent pharmaceutical patent search on a near-term gate-based quantum computer

Pei-Hua Wang, Y. Tseng, Jen-Hao Chen, 2022, Scientific Reports.

Essential Step Toward Mining Big Polymer Data: PolyName2Structure, Mapping Polymer Names to Structures

Yufeng J. Tseng, Pei-Hua Wang, Daniel P. Sanders, 2020 .

Effects of sarcosine and N, N-dimethylglycine on NMDA receptor-mediated excitatory field potentials

Y. Tseng, M. Chan, Hwei-Hsien Chen, 2017, Journal of Biomedical Science.

Screening and confirmation of 62 drugs of abuse and metabolites in urine by ultra-high-performance liquid chromatography-quadrupole time-of-flight mass spectrometry.

C. Kuo, I-Lin Tsai, Y. Tseng, 2013, Journal of analytical toxicology.

Using the matrix-induced ion suppression method for concentration normalization in cellular metabolomics studies.

Guan-Yuan Chen, C. Kuo, I-Lin Tsai, 2015, Analytical chemistry.

IntelliPatent: a web-based intelligent system for fast chemical patent claim drafting

Pei-Hua Wang, Yufeng Jane Tseng, Pei-Hua Wang, 2019, Journal of Cheminformatics.

Ensemble modeling with machine learning and deep learning to provide interpretable generalized rules for classifying CNS drugs with high prediction power

Y. Tseng, Bo-Han Su, Tzu-Hui Yu, 2021, Briefings Bioinform..

Development and application of a comparative fatty acid analysis method to investigate voriconazole-induced hepatotoxicity.

Guan-Yuan Chen, C. Kuo, Shu-Wen Lin, 2015, Clinica chimica acta; international journal of clinical chemistry.

Metabolomic Dynamic Analysis of Hypoxia in MDA-MB-231 and the Comparison with Inferred Metabolites from Transcriptomics Data

W. Fu, C. Kuo, I-Lin Tsai, 2013, Cancers.

Dependence of QSAR Models on the Selection of Trial Descriptor Sets: A Demonstration Using Nanotoxicity Endpoints of Decorated Nanotubes

Bo-Han Su, Emilio Xavier Esposito, Anton J. Hopfinger, 2013, J. Chem. Inf. Model..

QSAR Analyses of Skin Penetration Enhancers

Anton J. Hopfinger, Yufeng J. Tseng, Tao Zheng, 2007, J. Chem. Inf. Model..

Metabolomics of Children and Adolescents Exposed to Industrial Carcinogenic Pollutants.

C. Kuo, Han-Chun Kuo, Chang-Chuan Chan, 2019, Environmental science & technology.

Distinct metabolic changes in human lung cancer cells with differential radiation sensitivities

M. Tsai, C. Kuo, S. Wang, 2016 .

Fasting but not changes of plasma metabolome during oral glucose tolerance tests improves the diagnosis of severe coronary arterial stenosis

C. Hung, C. Kuo, L. Chuang, 2015, Clinical endocrinology.

Ion trace detection algorithm to extract pure ion chromatograms to improve untargeted peak detection quality for liquid chromatography/time-of-flight mass spectrometry-based metabolomics data.

Yufeng J Tseng, Ching-Hua Kuo, C. Kuo, 2015, Analytical chemistry.

LeadOp+R: Structure-Based Lead Optimization With Synthetic Accessibility

Emilio Xavier Esposito, Yufeng J. Tseng, Fang-Yu Lin, 2018, Front. Pharmacol..

Plasma metabolomic profiles predict near-term death among individuals with lower extremity peripheral arterial disease.

Chiang-Ching Huang, M. McDermott, Kiang Liu, 2013, Journal of vascular surgery.

Oversampling to Overcome Overfitting: Exploring the Relationship between Data Set Composition, Molecular Descriptors, and Predictive Modeling Methods

Emilio Xavier Esposito, Yufeng J. Tseng, Chia-Yun Chang, 2013, J. Chem. Inf. Model..

Identification of traumatic acid as a potential plasma biomarker for sarcopenia using a metabolomics‐based approach

Guan-Yuan Chen, S. Wang, Y. Tseng, 2021, Journal of cachexia, sarcopenia and muscle.

LipidPedia: a comprehensive lipid knowledgebase

Yufeng J. Tseng, Tien-Chueh Kuo, Y. Tseng, 2018, Bioinform..

Metabolomic characterization of laborers exposed to welding fumes.

M. Tsai, C. Kuo, S. Wang, 2012, Chemical research in toxicology.

Resistance Training Improves Muscle Function and Cardiometabolic Risks But Not Quality of Life in Older People With Type 2 Diabetes Mellitus: A Randomized Controlled Trial

C. Tseng, Y. Tseng, Wei-Shiung Yang, 2016, Journal of geriatric physical therapy.

When Machine Learning and Deep Learning Come to the Big Data in Food Chemistry

Y. Tseng, M. Appell, Pei-Jiun Chuang, 2023, ACS omega.

Advances in the prediction of mouse liver microsomal studies: From machine learning to deep learning

Alex Renn, Bo‐Han Su, Hsin Liu, 2020, WIREs Computational Molecular Science.

Predictive Toxicology Modeling: Protocols for Exploring hERG Classification and Tetrahymena pyriformis End Point Predictions

Bo-Han Su, Emilio Xavier Esposito, Yufeng J. Tseng, 2012, J. Chem. Inf. Model..

Template-Based de Novo Design for Type II Kinase Inhibitors and Its Extended Application to Acetylcholinesterase Inhibitors

Y. Tseng, Bo-Han Su, Y. Tu, 2013, Molecules.

Current development of integrated web servers for preclinical safety and pharmacokinetics assessments in drug development

Bo-Han Su, Yufeng J Tseng, Yi Hsiao, 2020, Briefings Bioinform..

MSIr: Automatic Registration Service for Mass Spectrometry Imaging and Histology

Y. Tseng, Cheng-Chih Hsu, Yingying Huang, 2023, Analytical chemistry.

LipidPedia: a comprehensive lipid knowledgebase

Y. Tseng, Tien-Chueh Kuo, 2018, Bioinform..

Categorical QSAR models for skin sensitization based on local lymph node assay measures and both ground and excited state 4D-fingerprint descriptors

Emilio Xavier Esposito, Anton J. Hopfinger, Yufeng J. Tseng, 2008, J. Comput. Aided Mol. Des..

4D-fingerprint categorical QSAR models for skin sensitization based on the classification of local lymph node assay measures.

Yi Li, Yufeng J Tseng, Dahua Pan, 2007, Chemical research in toxicology.

4D-Fingerprints, Universal QSAR and QSPR Descriptors

Anton J. Hopfinger, Yufeng J. Tseng, Dahua Pan, 2004, J. Chem. Inf. Model..

PgpRules: a decision tree based prediction server for P-glycoprotein substrates and inhibitors

Pei-Hua Wang, Yi-Shu Tu, Yufeng J Tseng, 2019, Bioinform..

Rule-Based Prediction Models of Cytochrome P450 Inhibition

Bo-Han Su, Yufeng J. Tseng, Yi-shu Tu, 2015, J. Chem. Inf. Model..

Different molecular enumeration influences in deep learning: an example using aqueous solubility

Yufeng Jane Tseng, Jen-Hao Chen, Y. Tseng, 2020, Briefings Bioinform..

Distribution-based classification method for baseline correction of metabolomic 1D proton nuclear magnetic resonance spectra.

Yufeng J Tseng, C. Kuo, S. Wang, 2013, Analytical chemistry.

A Portable Micro Gas Chromatography System for Lung Cancer Associated Volatile Organic Compound Detection

Shih-An Yu, Wei-Che Hsieh, Shey-Shi Lu, 2016, IEEE Journal of Solid-State Circuits.

Prediction and mechanistic interpretation of human oral drug absorption using MI-QSAR analysis.

Jianzhong Liu, A J Hopfinger, A. Hopfinger, 2007, Molecular pharmaceutics.

A Pilot Study of Metabolomic Pathways Associated With Fatigue in Survivors of Colorectal Cancer

K. Yeh, C. Kuo, S. Shun, 2020, Biological research for nursing.

Recent Advances in Quantum Computing for Drug Discovery and Development

Pei-Hua Wang, Y. Tseng, Yu-Yuan Yang, 2023, IEEE Nanotechnology Magazine.

Human Breathomics Database

Bo-Han Su, Tien-Chueh Kuo, Jessica Lin, 2020, Database J. Biol. Databases Curation.

Exploring possible mechanisms of action for the nanotoxicity and protein binding of decorated nanotubes: interpretation of physicochemical properties from optimal QSAR models.

Bo-Han Su, Emilio Xavier Esposito, Anton J Hopfinger, 2015, Toxicology and applied pharmacology.

MetaMOPE: a web service for mobile phase determination and fast chromatography peaks evaluation for metabolomics

Guan-Yuan Chen, C. Kuo, S. Wang, 2023, Bioinformatics Advances.

An efficient computer-aided structural elucidation strategy for mixtures using an iterative dynamic programming algorithm

Bo-Han Su, Meng-yu Shen, Yufeng J. Tseng, 2017, Journal of Cheminformatics.

A general optimization protocol for molecular property prediction using a deep learning network

Y. Tseng, Jen-hao Chen, 2021, Briefings Bioinform..

CypRules: a rule-based P450 inhibition prediction server

Bo-Han Su, Yufeng J. Tseng, Yi-shu Tu, 2015, Bioinform..

Comparison of controlled drugs and new psychoactive substances (NPS) regulations in East and Southeast Asia.

Y. Tseng, O. A. Lin, Pei-Jiun Chuang, 2023, Regulatory toxicology and pharmacology : RTP.

Coexisting gastrointestinal and hepatobiliary tract anomalies in omphalocele and gastroschisis: A twenty-year experience in a single tertiary medical center.

Y. Tseng, C. Yeung, W. Chan, 2022, Pediatrics and Neonatology.

The evolution of the spike protein and hACE2 interface of SARS-CoV-2 omicron variants determined by hydrogen bond formation.

Y. Tseng, Yu-Yuan Yang, 2023, Briefings in functional genomics.

Distribution-based classification method for baseline correction of metabolomic 1D proton nuclear magnetic resonance spectra.

C. Kuo, S. Wang, Y. Tseng, 2013, Analytical chemistry.

Effects of sarcosine and N, N-dimethylglycine on NMDA receptor-mediated excitatory field potentials

Y. Tseng, M. Chan, Hwei-Hsien Chen, 2017, Journal of Biomedical Science.

PanGPCR: predictions for multiple targets, repurposing and side effects

Bo-Han Su, Yufeng J Tseng, Lu-Chi Liu, 2020, Bioinform..

Directly monitor protein rearrangement on a nanosecond-to-millisecond time-scale

Y. Tseng, T. Lim, R. Chen, 2017, Scientific Reports.

Pathological Gait Analysis With an Open-Source Cloud-Enabled Platform Empowered by Semi-Supervised Learning-PathoOpenGait

Y. Tseng, M. Kuo, Ruey-Mei Wu, 2023, IEEE Journal of Biomedical and Health Informatics.

Computational chemistry and drug discovery: a call to action.

Rommie E. Amaro, W. Cornell, J. Jansen, 2012, Future medicinal chemistry.

Rule-Based Prediction Models of Cytochrome P450 Inhibition

Y. Tseng, Bo-Han Su, O. A. Lin, 2015, J. Chem. Inf. Model..

Quantitative Structure-Based Design: Formalism and Application of Receptor-Dependent RD-4D-QSAR Analysis to a Set of Glucose Analogue Inhibitors of Glycogen Phosphorylase

Anton J. Hopfinger, Yufeng J. Tseng, Dahua Pan, 2003, J. Chem. Inf. Comput. Sci..

G.A.M.E.: GPU-accelerated mixture elucidator

Bo-Han Su, Yufeng J. Tseng, Olivia A. Lin, 2017, Journal of Cheminformatics.

Rule-Based Classification Models of Molecular Autofluorescence

Bo-Han Su, Meng-yu Shen, Yufeng J. Tseng, 2015, J. Chem. Inf. Model..

Biopharma innovation trends during COVID-19 and beyond: an evidence from global partnerships and fundraising activities, 2011-2022

Y. Tseng, Tzu-Hui Yu, Yung-Yu Mei, 2023, Globalization and Health.

Characterization of markers, functional properties, and microbiome composition in human gut-derived bacterial extracellular vesicles

Y. Tseng, M. Kuo, Chih-Chi Li, 2023, Gut microbes.

Structure-Based Fragment Hopping for Lead Optimization Using Predocked Fragment Database

Yufeng J. Tseng, Fang-Yu Lin, Y. Tseng, 2011, J. Chem. Inf. Model..

The great descriptor melting pot: mixing descriptors for the common good of QSAR models

Emilio Xavier Esposito, Anton J. Hopfinger, Yufeng J. Tseng, 2011, Journal of Computer-Aided Molecular Design.