Derek S. Lundberg

发表

Learning Microbial Interaction Networks from Metagenomic Count Data

Vladimir Jojic, Surojit Biswas, Meredith McDonald, 2015, RECOMB.

Learning Microbial Interaction Networks from Metagenomic Count Data

Vladimir Jojic, Surojit Biswas, Meredith McDonald, 2014, J. Comput. Biol..

MT-Toolbox: improved amplicon sequencing using molecule tags

Derek S. Lundberg, Jeffery L. Dangl, Corbin D. Jones, 2014, BMC Bioinformatics.

The relationship between microbial population size and disease in the Arabidopsis thaliana phyllosphere

Derek S. Lundberg, D. Weigel, J. Bergelson, 2019 .

Genomic features of bacterial adaptation to plants

Derek S. Lundberg, S. Tringe, Asaf Levy, 2017, Nature Genetics.

PhyloSift: phylogenetic analysis of genomes and metagenomes

Henry C. M. Leung, Brian C. Thomas, Ocn, 2014, PeerJ.

ProDeGe: a computational protocol for fully automated decontamination of genomes

Evan Andersen, Kristin Tennessen, Nikos Kyrpides, 2015, The ISME Journal.

Host-associated microbe PCR (hamPCR): accessing new biology through convenient measurement of both microbial load and community composition

Derek S. Lundberg, D. Weigel, T. Lahaye, 2020 .

Measuring both microbial load and diversity with a single amplicon sequencing library

Derek S. Lundberg, D. Weigel, T. Lahaye, 2020, bioRxiv.

Stability of association between Arabidopsis thaliana and Pseudomonas pathogens over evolutionary time scales

Derek S. Lundberg, D. Weigel, R. Neher, 2018, bioRxiv.

Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves

Derek S. Lundberg, D. Weigel, Julian Regalado, 2020, The ISME Journal.

Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves

Derek S. Lundberg, D. Weigel, Julian Regalado, 2019, The ISME Journal.

Spatially resolved host-bacteria-fungi interactomes via spatial metatranscriptomics

Derek S. Lundberg, D. Weigel, S. Giacomello, 2022, bioRxiv.

Contrasting patterns of microbial dominance in the Arabidopsis thaliana phyllosphere

Derek S. Lundberg, D. Weigel, Talia L. Karasov, 2021, bioRxiv.

A rainfall-manipulation experiment with 517 Arabidopsis thaliana accessions

Derek S. Lundberg, H. Burbano, George Wang, 2017, bioRxiv.

Blue Native Polyacrylamide Gel Electrophoresis (BN-PAGE) for the Analysis of Protein Oligomers in Plants.

Derek S. Lundberg, D. Weigel, Lei Li, 2020, Current protocols in plant biology.

The changing influence of host genetics on the leaf fungal microbiome throughout plant development

Derek S. Lundberg, Talia L. Karasov, 2022, PLoS biology.

HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing.

Derek S. Lundberg, D. Weigel, Lei Li, 2020, Molecular plant.

Methods for Genotyping-by-Sequencing.

Derek S. Lundberg, D. Weigel, Danelle K. Seymour, 2017, Methods in molecular biology.

Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales

Derek S. Lundberg, D. Weigel, R. Neher, 2018, Cell host & microbe.

Natural selection on the Arabidopsis thaliana genome in present and future climates

Derek S. Lundberg, H. Burbano, George Wang, 2019, Nature.

Multiple Sources of Introduction of North American Arabidopsis thaliana from across Eurasia

Derek S. Lundberg, H. Burbano, D. Weigel, 2021, Molecular biology and evolution.

Fine-scale Population Structure of North American Arabidopsis thaliana Reveals Multiple Sources of Introduction from Across Eurasia

Derek S. Lundberg, H. Burbano, D. Weigel, 2021, bioRxiv.

Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition

Derek S. Lundberg, D. Weigel, T. Lahaye, 2021, eLife.

Lawrence Berkeley National Laboratory Recent Work Title Genomic features of bacterial adaptation to plants Permalink

Derek S. Lundberg, T. Woyke, J. Vorholt, 2017 .

Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant

Derek S. Lundberg, D. Weigel, Haim Ashkenazy, 2022, Nature Ecology & Evolution.

Bacterial populations in juvenile maize rhizospheres originate from both seed and soil

Derek S. Lundberg, V. Reis, M. Raizada, 2016, Plant and Soil.

Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves

Derek S. Lundberg, D. Weigel, Julian Regalado, 2020, The ISME Journal.

Stability of association between Arabidopsis thaliana and Pseudomonas pathogens over evolutionary time scales

Derek S. Lundberg, D. Weigel, R. Neher, 2018, bioRxiv.

The relationship between microbial biomass and disease in the Arabidopsis thaliana phyllosphere

Derek S. Lundberg, D. Weigel, J. Bergelson, 2019 .

Root-exuded coumarin shapes the root microbiome

Derek S. Lundberg, P. Teixeira, 2018, Proceedings of the National Academy of Sciences.

Protective host-dependent antagonism among Pseudomonas in the Arabidopsis phyllosphere

Derek S. Lundberg, D. Weigel, Haim Ashkenazy, 2021, bioRxiv.

Stability of association between Arabidopsis thaliana and Pseudomonas 1 pathogens over evolutionary time scales 2 3 4

Derek S. Lundberg, D. Weigel, R. Neher, 2018 .