Yu-Shan Lin

发表

Enhanced ER proteostasis and temperature differentially impact the mutational tolerance of influenza hemagglutinin

Vincent L. Butty, Michael B. Doud, J. Bloom, 2018, eLife.

Toward structure prediction of cyclic peptides.

Hongtao Yu, Yu-Shan Lin, 2015, Physical chemistry chemical physics : PCCP.

Insights into How Cyclic Peptides Switch Conformations.

Hongtao Yu, Yu-Shan Lin, S. M. McHugh, 2016, Journal of chemical theory and computation.

Toward accurately modeling N-methylated cyclic peptides.

Hongtao Yu, Yu-Shan Lin, S. M. McHugh, 2017, Physical chemistry chemical physics : PCCP.

Mapping the sequence-structure relationships of simple cyclic hexapeptides.

Hongtao Yu, Yu-Shan Lin, S. M. McHugh, 2017, Physical chemistry chemical physics : PCCP.

Designing Well-Structured Cyclic Pentapeptides Based on Sequence-Structure Relationships.

Joshua A. Kritzer, J. Kritzer, Yu-Shan Lin, 2018, The journal of physical chemistry. B.

Are Protein Force Fields Getting Better? A Systematic Benchmark on 524 Diverse NMR Measurements.

Rhiju Das, Vijay S Pande, Kyle A Beauchamp, 2012, Journal of chemical theory and computation.

A perfluoroaryl-cysteine S(N)Ar chemistry approach to unprotected peptide stapling.

Alexander M. Spokoyny, Hongtao Yu, Yu-Shan Lin, 2013, Journal of the American Chemical Society.

A molecular interpretation of 2D IR protein folding experiments with Markov state models.

Vincent A Voelz, Vijay S Pande, Kyle A Beauchamp, 2014, Biophysical journal.

Collagen interactions: Drug design and delivery.

B. An, Yu-Shan Lin, B. Brodsky, 2016, Advanced drug delivery reviews.

β-Branched Amino Acids Stabilize Specific Conformations of Cyclic Hexapeptides.

Joshua A. Kritzer, J. Kritzer, Yu-Shan Lin, 2019, Biophysical journal.

Using synthetic peptides and recombinant collagen to understand DDR-collagen interactions.

Yu-Shan Lin, Eric Chen, 2019, Biochimica et biophysica acta. Molecular cell research.

Cyclic peptides: backbone rigidification and capability of mimicking motifs at protein-protein interfaces.

He Huang, Yu-Shan Lin, J. Miao, 2020, Physical chemistry chemical physics : PCCP.

Understanding and designing head‐to‐tail cyclic peptides

Yu-Shan Lin, S. M. McHugh, Diana P. Slough, 2018, Biopolymers.

Heterochiral Knottin Protein: Folding and Solution Structure.

F. V. Cochran, J. Cochran, Hongtao Yu, 2017, Biochemistry.

Convergent diversity-oriented side-chain macrocyclization scan for unprotected polypeptides.

Alexander M. Spokoyny, Hongtao Yu, Yu-Shan Lin, 2013, Organic & biomolecular chemistry.

Dedifferentiated liposarcoma can induce a leukemoid reaction

Kuo-Feng Huang, Chien-Feng Li, Yu-Shan Lin, 2014 .

Predictions for α-Helical Glycopeptide Design from Structural Bioinformatics Analysis

Yu-Shan Lin, S. M. McHugh, Julia R. Rogers, 2017, J. Chem. Inf. Model..

N-Amination Converts Amyloidogenic Tau Peptides into Soluble Antagonists of Cellular Seeding.

J. D. Del Valle, Yu-Shan Lin, J. Miao, 2021, ACS chemical neuroscience.

Vibrational Line Shapes, Spectral Diffusion, and Hydrogen Bonding in Liquid Water

Yu-Shan Lin, J. L. Skinner, B. Auer, 2008 .

Genetically-encoded discovery of proteolytically stable bicyclic inhibitors for morphogen NODAL†

R. Derda, Yu-Shan Lin, L. Postovit, 2021, Chemical science.

6-shogaol (alkanone from ginger) induces apoptotic cell death of human hepatoma p53 mutant Mahlavu subline via an oxidative stress-mediated caspase-dependent mechanism.

Ray Liu, F. Lu, Ching-Hsein Chen, 2007, Journal of agricultural and food chemistry.

Consequences of Depsipeptide Substitution on the ClpP Activation Activity of Antibacterial Acyldepsipeptides.

Hongtao Yu, Susan L. Nimmo, Yu-Shan Lin, 2017, ACS medicinal chemistry letters.

Development of a Human Dihydroorotate Dehydrogenase (hDHODH) Pharma-Similarity Index Approach with Scaffold-Hopping Strategy for the Design of Novel Potential Inhibitors

C. Tang, Yu-Shan Lin, Chihan Lee, 2014, PloS one.

Elucidating Solution Structures of Cyclic Peptides Using Molecular Dynamics Simulations.

He Huang, Yu-Shan Lin, J. Miao, 2021, Chemical reviews.

Genetically-Encoded Discovery of Perfluoroaryl-Macrocycles that Bind to Albumin and Exhibit Extended Circulation in-vivo

R. Derda, Matthew S Macauley, J. Nuss, 2022, bioRxiv.

Collagen Gly missense mutations: Effect of residue identity on collagen structure and integrin binding.

D. Kaplan, Hongtao Yu, Yu-Shan Lin, 2018, Journal of structural biology.

Identification of the High Molecular Weight Isoform of Phostensin

Wei-Ting Liu, Yu-Shan Lin, Hsien-Bin Huang, 2014, International journal of molecular sciences.

2D IR line shapes probe ovispirin peptide conformation and depth in lipid bilayers.

J. D. de Pablo, M. Zanni, Yu-Shan Lin, 2010, Journal of the American Chemical Society.

Effects of flexibility of the α2 chain of type I collagen on collagenase cleavage.

D. Kaplan, B. An, Yu-Shan Lin, 2018, Journal of structural biology.

Simultaneous analysis of six polymethoxyflavones and six 5-hydroxy-polymethoxyflavones by high performance liquid chromatography combined with linear ion trap mass spectrometry.

Chi-Tang Ho, Yu-Shan Lin, Chih-Yu Lo, 2012, Journal of agricultural and food chemistry.

A backbone‐dependent rotamer library with high (ϕ, ψ) coverage using metadynamics simulations

Yu-Shan Lin, J. Miao, J. Damjanovic, 2022, Protein science : a publication of the Protein Society.

Design and synthesis of intramolecular hydrogen bonding systems. Their application in metal cation sensing based on excited-state proton transfer reaction

P. Chou, Yu-Shan Lin, M. O. Ahmed, 2004 .

Consequences of Glycine Mutations in the Fibronectin-binding Sequence of Collagen*

B. An, Hongtao Yu, Yu-Shan Lin, 2016, The Journal of Biological Chemistry.

A Perfluoroaryl-Cysteine S[subscript N]Ar Chemistry Approach to Unprotected Peptide Stapling

Alexander M. Spokoyny, Hongtao Yu, Yu-Shan Lin, 2013 .

Effects of familial mutations on the monomer structure of Aβ₄₂.

V. Pande, Yu-Shan Lin, 2012, Biophysical journal.

Investigating how peptide length and a pathogenic mutation modify the structural ensemble of amyloid beta monomer.

Vijay S Pande, Kyle A Beauchamp, Gregory R Bowman, 2012, Biophysical journal.

Visualizing and Understanding Ordered Surface Phases during the Ullmann Coupling Reaction

Natalie A. Wasio, Amanda M. Larson, E. Sykes, 2021 .

Synthesis, characterization, and catalytic activity of sodium ketminiate complexes toward the ring-opening polymerization of L-lactide

Yu-Shan Lin, M. Chiang, Y. Lai, 2016 .

Competitive intramolecular hydrogen bonding formation and excited-state proton transfer reaction in 1-[(diethylamino)-methyl]-2-hydroxy-3-naphthaldehyde

Yu-Shan Lin, Jen-Kan Yu, Ya-Hui Hu, 2004 .

Solution structures of rat amylin peptide: simulation, theory, and experiment.

Lu Wang, Yun Ling, Manan Chopra, 2010, Biophysical journal.

Stapled β-Hairpins Featuring 4-Mercaptoproline.

Joshua A. Kritzer, J. Baleja, J. Kritzer, 2021, Journal of the American Chemical Society.

Cytotoxic constituents of the stems of Cinnamomum subavenium.

Ching-Hsein Chen, C. Wong, Yu-Shan Lin, 2007, Journal of natural products.

Solvent relaxation and electron back transfer following photoinduced electron transfer in an ensemble of randomly distributed donors and acceptors

Yu-Shan Lin, M. Fayer, R. C. Dorfman, 1990 .

Time dependence of donor--acceptor electron transfer and back transfer in solid solution

Yu-Shan Lin, M. Fayer, R. C. Dorfman, 1989 .

Photoinduced electron transfer and back transfer in systems of randomly distributed donors and acceptors: picosecond transient grating experiments

Yu-Shan Lin, M. Fayer, M. Zimmt, 1988 .

JMJD5 regulates PKM2 nuclear translocation and reprograms HIF-1α–mediated glucose metabolism

H. Kung, W. Cheng, Wen-Ching Wang, 2013, Proceedings of the National Academy of Sciences.

Diversity-Oriented Stapling Yields Intrinsically Cell-Penetrant Inducers of Autophagy

Joshua A. Kritzer, J. Kritzer, Hongtao Yu, 2017, Journal of the American Chemical Society.

The endoplasmic reticulum proteostasis network profoundly shapes the protein sequence space accessible to HIV envelope

Vincent L. Butty, C. Ogbunugafor, Angela M. Phillips, 2022, PLoS biology.

Deep Alanine Scanning Reveals Potent Multi-alanine-substituted Protein–protein Interaction Inhibitors

Yu-Shan Lin, Fan Yang, Jennifer Mortensen, 2021 .

Host proteostasis modulates influenza evolution

Vincent L. Butty, L. Mirny, S. Levine, 2017, eLife.

Destabilized adaptive influenza variants critical for innate immune system escape are potentiated by host chaperones

Vincent L. Butty, C. L. Moore, J. Bloom, 2018, PLoS biology.

Structural basis for the antiarrhythmic blockade of a potassium channel with a small molecule

R. Ramirez, J. Jalife, A. Bohm, 2017, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

A bicyclic peptide scaffold promotes phosphotyrosine mimicry and cellular uptake.

Joshua A. Kritzer, J. Baleja, M. R. Eshelman, 2014, Bioorganic & medicinal chemistry.

Vibrational spectroscopy and dynamics of water confined inside reverse micelles.

P. Pieniazek, J. Skinner, Yu-Shan Lin, 2009, The journal of physical chemistry. B.

The Host Cell’s Endoplasmic Reticulum Proteostasis Network Profoundly Shapes the Protein Sequence Space Accessible to HIV Envelope

Vincent L. Butty, Angela M. Phillips, Yu-Shan Lin, 2021, bioRxiv.

Genomic analysis of bacteriophage ϕAB1, a ϕKMV-like virus infecting multidrug-resistant Acinetobacter baumannii.

Anren Hu, Yu-Shan Lin, N. Lin, 2011, Genomics.

Identification and Characterization of the Actin-Binding Motif of Phostensin

Kuang-Yung Huang, Ming-Chi Lu, N. Lai, 2012, International journal of molecular sciences.

CATBOSS: Cluster Analysis of Trajectories Based on Segment Splitting

James M. Murphy, Yu-Shan Lin, Jovan Damjanovic, 2021, J. Chem. Inf. Model..

Simple few-state models reveal hidden complexity in protein folding

Vijay S Pande, Kyle A Beauchamp, Kyle A. Beauchamp, 2012, Proceedings of the National Academy of Sciences.

Identification of phostensin in association with Eps 15 homology domain-containing protein 1 (EHD1) and EHD4.

Kuang-Yung Huang, Ming-Chi Lu, N. Lai, 2020, Biochemical and biophysical research communications.

Computational methods to design cyclic peptides.

Hongtao Yu, Sean M McHugh, Julia R Rogers, 2016, Current opinion in chemical biology.

Enzymatic Phosphorylation of Ser in a Type I Collagen Peptide.

J. Dixon, D. Kaplan, Sourav Banerjee, 2018, Biophysical journal.

Controlling Molecular Switching via Chemical Functionality: Ethyl vs Methoxy Rotors

Natalie A. Wasio, Amanda M. Larson, E. Sykes, 2019, The Journal of Physical Chemistry C.

Mapping the Effect of Gly Mutations in Collagen on α2β1 Integrin Binding

D. Kaplan, B. An, Hongtao Yu, 2016, The Journal of Biological Chemistry.

Modulation of alternative splicing by expression of small nuclear ribonucleoprotein polypeptide N

Yu-Shan Lin, Yao-Ting Huang, Moon-Sing Lee, 2014, The FEBS journal.

Soluble and insoluble phenolic compounds and antioxidant activity of immature calamondin affected by solvents and heat treatment.

Chi-Tang Ho, Yu-Shan Lin, Shyi-Neng Lou, 2014, Food chemistry.

A Novel Needle Structure that Can Avoid Intravascular Injection of Any Filler

Yu-Shan Lin, Hsiang Huang, 2017, Plastic and Reconstructive Surgery, Global Open.

Novel Double-Needle System That Can Prevent Intravascular Injection of Any Filler

Yu-Shan Lin, Hsiang Huang, 2017, Plastic and reconstructive surgery. Global open.

Natalie A. Wasio, E. Sykes, Zachary C. Smith, 2017, Nature Communications.

Characterization of the interactions between inhibitor-1 and recombinant PP1 by NMR spectroscopy

Shing‐Jong Huang, Yu-Shan Lin, Hsien-Bin Huang, 2018, Scientific Reports.

Water inertial reorientation: Hydrogen bond strength and the angular potential

B. Bagchi, J. Skinner, Yu-Shan Lin, 2008, Proceedings of the National Academy of Sciences.

The Antimalarial Chloroquine Reduces the Burden of Persistent Atrial Fibrillation

D. Sayad, Yu-Shan Lin, J. Saiz, 2019, Front. Pharmacol..

d-Amino Acid Scan of Two Small Proteins.

Hongtao Yu, Yu-Shan Lin, B. Pentelute, 2016, Journal of the American Chemical Society.

Gating mechanism of the influenza A M2 channel revealed by 1D and 2D IR spectroscopies.

I. Arkin, M. Zanni, Yu-Shan Lin, 2009, Structure.

Training Neural Network Models Using Molecular Dynamics Simulation Results to Efficiently Predict Cyclic Hexapeptide Structural Ensembles.

Yu-Shan Lin, J. Miao, Tiffani Hui, 2023, Journal of chemical theory and computation.

Light-responsive bicyclic peptides.

Hongtao Yu, R. Derda, Yu-Shan Lin, 2018, Organic & biomolecular chemistry.

Supplemental Data Gating Mechanism of the Influenza A M 2 Channel Revealed by 1 and 2 D IR Spectroscopies

M. Zanni, Yu-Shan Lin, Prabuddha Mukherjee, 2009 .

Experimental investigation of donor-acceptor electron transfer and back transfer in solid solutions

Yu-Shan Lin, M. Fayer, R. C. Dorfman, 1989 .

Structure prediction of cyclic peptides by molecular dynamics + machine learning

Yu-Shan Lin, J. Miao, Marc Descoteaux, 2021, Chemical science.

Structural and functional characterization of β2‐glycoprotein I domain 1 in anti‐melanoma cell migration

Kai-Yao Huang, Tzong-Yi Lee, Yu-Shan Lin, 2019, Cancer science.

Characterization of the interactions between inhibitor-1 and recombinant PP1 by NMR spectroscopy

Shing‐Jong Huang, Yu-Shan Lin, Hsien-Bin Huang, 2018, Scientific Reports.

Anti-inflammatory effects of daidzein on primary astroglial cell culture

Jui-Sheng Sun, Yu-Shan Lin, Man-Hai Liu, 2009, Nutritional neuroscience.

Diversity-Oriented Stapling Yields Intrinsically Cell-Penetrant Inducers of Autophagy

Joshua A. Kritzer, Hongtao Yu, Yu-Shan Lin, 2017, Journal of the American Chemical Society.

N-Amination Converts Amyloidogenic Tau Peptides into Soluble Antagonists of Cellular Seeding.

J. D. Del Valle, Yu-Shan Lin, J. Miao, 2021, ACS chemical neuroscience.

Mapping the sequence-structure relationships of simple cyclic hexapeptides.

Hongtao Yu, Yu-Shan Lin, S. M. McHugh, 2017, Physical chemistry chemical physics : PCCP.

Amino acid modifications for conformationally constraining naturally occurring and engineered peptide backbones: Insights from the Protein Data Bank

S. Burley, Yu-Shan Lin, S. M. McHugh, 2018, Biopolymers.

d-Amino Acid Scan of Two Small Proteins.

Hongtao Yu, Yu-Shan Lin, B. Pentelute, 2016, Journal of the American Chemical Society.

Are Protein Force Fields Getting Better? A Systematic Benchmark on 524 Diverse NMR Measurements.

Kyle A. Beauchamp, V. Pande, Rhiju Das, 2012, Journal of chemical theory and computation.

Binary combinatorial scanning reveals potent poly-alanine-substituted inhibitors of protein-protein interactions

Yu-Shan Lin, B. Pentelute, Yen-Chun Lee, 2022, Communications Chemistry.

Genomic analysis of bacteriophage ϕAB1, a ϕKMV-like virus infecting multidrug-resistant Acinetobacter baumannii.

Anren Hu, Yu-Shan Lin, N. Lin, 2011, Genomics.