I. Eliseeva

发表

Transportin-1-dependent YB-1 nuclear import.

A. Sorokin, L. Ovchinnikov, D. Mordovkina, 2016, Biochemical and biophysical research communications.

Architectural proteins Pita, Zw5,and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila

I. Kulakovskiy, A. Penin, I. Eliseeva, 2016, Nucleic acids research.

The Reduced Level of Inorganic Polyphosphate Mobilizes Antioxidant and Manganese-Resistance Systems in Saccharomyces cerevisiae

I. Kulakovskiy, V. Ostroumov, I. Eliseeva, 2019, Cells.

Enhanced C/EBPs binding to C>T mismatches facilitates fixation of CpG mutations

I. Kulakovskiy, O. Nikonov, I. Vorontsov, 2020, bioRxiv.

How to determine the size of folding nuclei of protofibrils from the concentration dependence of the rate and lag-time of aggregation. II. Experimental application for insulin and LysPro insulin: aggregation morphology, kinetics, and sizes of nuclei.

A. V. Finkelstein, N. Dovidchenko, O. Galzitskaya, 2014, The journal of physical chemistry. B.

Innate immunity: Bacterial cell‐wall muramyl peptide targets the conserved transcription factor YB‐1

A. O. Shepelyakovskaya, L. Ovchinnikov, V. Ivanov, 2015, FEBS letters.

The Y-Box Binding Protein 1 Suppresses Alzheimer’s Disease Progression in Two Animal Models

L. Ovchinnikov, I. Eliseeva, D. Lyabin, 2015, PloS one.

Alternative Forms of Y-Box Binding Protein 1 and YB-1 mRNA

I. Kulakovskiy, L. Ovchinnikov, I. Eliseeva, 2014, PloS one.

In silico motif analysis suggests an interplay of transcriptional and translational control in mTOR response

F. Kondrashov, I. Kulakovskiy, I. Vorontsov, 2013, Translation.

Translation of Human β-Actin mRNA is Regulated by mTOR Pathway

L. Ovchinnikov, I. Eliseeva, M. Vasilieva, 2019, Genes.

Towards the mechanism(s) of YB-3 synthesis regulation by YB-1

L. Ovchinnikov, I. Eliseeva, D. Lyabin, 2020, RNA biology.

YB-1 Synthesis Is Regulated by mTOR Signaling Pathway

L. Ovchinnikov, I. Eliseeva, D. Lyabin, 2012, PloS one.

Transcriptome profile of yeast reveals the essential role of PMA2 and uncharacterized gene YBR056W-A (MNC1) in adaptation to toxic manganese concentration.

I. Kulakovskiy, I. Eliseeva, N. Andreeva, 2017, Metallomics : integrated biometal science.

Interplay between Y-box-binding protein 1 (YB-1) and poly(A) binding protein (PABP) in specific regulation of YB-1 mRNA translation

L. Ovchinnikov, I. Eliseeva, D. Lyabin, 2011, RNA biology.

YBoxBinding Protein 1 (YB1) and Its Functions

L. Ovchinnikov, E. Kim, I. Eliseeva, 2011 .

Identification of proteins specifically interacting with YB-1 mRNA 3′ UTR and the effect of hnRNP Q on YB-1 mRNA translation

L. Ovchinnikov, I. Eliseeva, D. Lyabin, 2013, Biochemistry (Moscow).

Diverse Regulation of YB-1 and YB-3 Abundance in Mammals

I. Kulakovskiy, I. Eliseeva, D. Lyabin, 2022, Biochemistry (Moscow).

Inhibition of Transcription Induces Phosphorylation of YB-1 at Ser102 and Its Accumulation in the Nucleus

D. Pastré, P. Curmi, L. Ovchinnikov, 2019, Cells.

Poly(A)-binding proteins: Structure, domain organization, and activity regulation

L. Ovchinnikov, I. Eliseeva, D. Lyabin, 2013, Biochemistry (Moscow).

Specific PABP effect on translation of YB-1 mRNA is neutralized by polyadenylation through a “mini-loop” at 3′ UTR

L. Ovchinnikov, I. Eliseeva, D. Lyabin, 2012, RNA biology.

YB‐1 protein: functions and regulation

L. Ovchinnikov, I. Eliseeva, D. Lyabin, 2014, Wiley interdisciplinary reviews. RNA.

Y-Box Binding Proteins in mRNP Assembly, Translation, and Stability Control

L. Ovchinnikov, D. Mordovkina, I. Eliseeva, 2020, Biomolecules.

Identification of proteins specifically interacting with YB-1 mRNA 3′ UTR and the effect of hnRNP Q on YB-1 mRNA translation

L. Ovchinnikov, I. Eliseeva, D. Lyabin, 2013, Biochemistry (Moscow).

A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites

Vsevolod J. Makeev, Natalia G. Esipova, Ivan V. Kulakovskiy, 2011, Bioinform..

Negative selection maintains transcription factor binding motifs in human cancer

V. Makeev, I. Kulakovskiy, E. Lukianova, 2015, BMC Genomics.

Diverse Regulation of YB-1 and YB-3 Abundance in Mammals

I. Kulakovskiy, I. Eliseeva, D. Lyabin, 2022, Biochemistry (Moscow).

YB-3 substitutes YB-1 in global mRNA binding

I. Kulakovskiy, L. Ovchinnikov, I. Eliseeva, 2020, RNA biology.

Enhanced C/EBP binding to G·T mismatches facilitates fixation of CpG mutations in cancer and adult stem cells.

I. Kulakovskiy, O. Nikonov, I. Vorontsov, 2021, Cell reports.

RNA-Seq data of ALKBH5 and FTO double knockout HEK293T human cells

I. Kulakovskiy, I. Eliseeva, D. Lyabin, 2022, Data in brief.

Effects of extracellular YB-1 protein on cultured cells of human breast cancer

I. Kulakovskiy, L. Ovchinnikov, I. Eliseeva, 2013, Biochemistry (Moscow) Supplement Series A: Membrane and Cell Biology.

Effect of the multifunctional proteins RPA, YB‐1, and XPC repair factor on AP site cleavage by DNA glycosylase NEIL1

P. Curmi, L. Ovchinnikov, L. Hamon, 2012, Journal of molecular recognition : JMR.

Preferred distances between transcription factor binding sites

Vsevolod J. Makeev, Ivan V. Kulakovskiy, Artem S. Kasianov, 2011 .

Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates.

V. Makeev, V. Gladyshev, I. Kulakovskiy, 2021, Methods in molecular biology.

YB-1 Phosphorylation at Serine 209 Inhibits Its Nuclear Translocation

A. Sorokin, L. Ovchinnikov, D. Mordovkina, 2021, International journal of molecular sciences.

Y-box-binding protein 1 (YB-1) and its functions

L. Ovchinnikov, I. Eliseeva, D. Lyabin, 2011, Biochemistry (Moscow).

The Degassing Laws for Railway Wheel Steel in a Vacuum Tank Degasser

I. Eliseeva, A. N. Shapovalov, E. Smirnova, 2021, Defect and Diffusion Forum.

Interplay between Y-box-binding protein 1 (YB-1) and poly(A) binding protein (PABP) in specific regulation of YB-1 mRNA translation

L. Ovchinnikov, I. Eliseeva, D. Lyabin, 2011, RNA biology.

Poly(A)-binding proteins: Structure, domain organization, and activity regulation

L. Ovchinnikov, I. Eliseeva, D. Lyabin, 2013, Biochemistry (Moscow).

Y-Box-Binding Proteins Have a Dual Impact on Cellular Translation

I. Kulakovskiy, I. Eliseeva, D. Lyabin, 2024, International journal of molecular sciences.

HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors

V. Makeev, A. Jolma, I. Yevshin, 2023, Nucleic acids research.