J. Chomilier

发表

Arabidopsis thaliana Tic110, involved in chloroplast protein translocation, contains at least fourteen highly divergent heat-like repeated motifs

Adrian Jaimes‐Becerra, J. Hernández-Torres, J. Chomilier, 2014, Biologia.

New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification.

J. Wójcik, J. Mornon, J. Chomilier, 1999, Journal of molecular biology.

A global taxonomy of loops in globular proteins.

J. Kwasigroch, J. Mornon, J. Chomilier, 1996, Journal of molecular biology.

Hydrophobic core in domains of immunoglobulin-like fold

I. Roterman, M. Banach, J. Chomilier, 2014, Journal of biomolecular structure & dynamics.

Contribution to the Prediction of the Fold Code: Application to Immunoglobulin and Flavodoxin Cases

Jacques Chomilier, Mateusz Banach, Irena Roterman, 2015, PloS one.

Deciphering protein sequence information through hydrophobic cluster analysis (HCA): current status and perspectives

G. Labesse, B. Henrissat, L. Canard, 1997, Cellular and Molecular Life Sciences CMLS.

Non-GTPase proteins that share common motifs with g domains: convergent or divergent evolution or domain recombination?

J. Chomilier, A. Barbosa, Jorge Hernández Torres, 2010 .

Nonatomic solvent‐driven voronoi tessellation of proteins: An open tool to analyze protein folds

Jacques Chomilier, Alain Soyer, Rémi Jullien, 2002, Proteins.

Sequence specificity in triple-helix formation: experimental and theoretical studies of the effect of mismatches on triplex stability.

M. Rougée, J. Mergny, C. Hélène, 1991, Biochemistry.

Distribution of tightened end fragments of globular proteins statistically matches that of topohydrophobic positions: towards an efficient punctuation of protein folding?

I. Berezovsky, J. Mornon, J. Chomilier, 2001, Cellular and Molecular Life Sciences CMLS.

Prediction of stability upon point mutation in the context of the folding nucleus.

Z. Lacroix, J. Chomilier, N. Papandreou, 2010, Omics : a journal of integrative biology.

Universal positions in globular proteins.

Jacques Chomilier, Anne Lopes, Nikolaos Papandreou, 2004, European journal of biochemistry.

Prediction of the protein folding core: application to the immunoglobulin fold.

J. Chomilier, N. Prudhomme, 2009, Biochimie.

Compton profile of beryllium

Marvin L. Cohen, M. Chou, P. Lam, 1982 .

SMIR: a method to predict the residues involved in the core of a protein

Z. Lacroix, J. Chomilier, N. Papandreou, 2014 .

Increased Shedding of Angiotensin-converting Enzyme by a Mutation Identified in the Stalk Region*

M. Eyries, F. Soubrier, J. Chomilier, 2001, The Journal of Biological Chemistry.

Analyses of displacements resulting from a point mutation in proteins.

J. Chomilier, Mathilde Carpentier, M. Carpentier, 2020, Journal of structural biology.

Identifying distant homologous viral sequences in metagenomes using protein structure information

Alaguraj Veluchamy, François Coste, J. Chomilier, 2014 .

Active immunization against murine TNFalpha peptides in mice: generation of endogenous antibodies cross-reacting with the native cytokine and in vivo protection.

J. Cavaillon, J. Zagury, S. Muller, 2004, Vaccine.

Electron momentum density and compton profiles: an accurate check of overlap models

J. Chomilier, G. Loupias, 1986 .

Electronic density of first stage lithium intercalated graphite

D. Guérard, J. Chomilier, G. Loupias, 1985 .

Recombination of chl-fus gene (Plastid Origin) downstream of hop: a locus of chromosomal instability

J. Hernández-Torres, J. Chomilier, Libia Catalina Salinas Castellanos, 2015, BMC Genomics.

Mutations in SPG11, encoding spatacsin, are a major cause of spastic paraplegia with thin corpus callosum

M. Ruberg, A. Durr, N. Elleuch, 2007, Nature Genetics.

Analysis of fragments induced by simulated lattice protein folding.

J. Mornon, E. Eliopoulos, J. Chomilier, 2004, Comptes rendus biologies.

Protein folds as synapomorphies of the tree of life

G. Lecointre, J. Chomilier, Mathilde Carpentier, 2022, Evolution; international journal of organic evolution.

A new protein folding algorithm based on hydrophobic compactness: Rigid Unconnected Secondary Structure Iterative Assembly (RUSSIA). I: Methodology.

J. Mornon, J. Chomilier, K. Le Tuan, 2003, Protein Engineering.

Molecular modeling of immunoglobulin light chains implicates hydrophobic residues in non-amyloid light chain deposition disease.

J. Chomilier, F. Stevens, S. Deret, 1997, Protein engineering.

Sequence analyses reveal that a TPR–DP module, surrounded by recombinable flanking introns, could be at the origin of eukaryotic Hop and Hip TPR–DP domains and prokaryotic GerD proteins

J. Chomilier, N. Papandreou, J. Hernández Torres, 2009, Cell Stress and Chaperones.

Tandem duplications of a degenerated GTP-binding domain at the origin of GTPase receptors Toc159 and thylakoidal SRP.

J. Chomilier, J. Hernández Torres, M. Maldonado, 2007, Biochemical and biophysical research communications.

Improvement of collagen-induced arthritis by active immunization against murine IL-1beta peptides designed by molecular modelling.

J. Zagury, S. Muller, J. Chomilier, 2005, Vaccine.

Automat and BLAST: comparison of two protein sequence similarity search programs

H Cantalloube, G Labesse, J Chomilier, 1995, Comput. Appl. Biosci..

Structural comparisons lead to the definition of a new superfamily of NAD(P)(H)-accepting oxidoreductases: the single-domain reductases/epimerases/dehydrogenases (the 'RED' family).

G Labesse, J Chomilier, G. Labesse, 1994, The Biochemical journal.

Design of Bifunctional Nucleic Acid Ligands

M. Rougée, J. Mergny, J. Chomilier, 1990 .

Correction for multiple scattering in Compton profile experiments: Application for synchrotron source photons

J. Chomilier, J. Felsteiner, G. Loupias, 1985 .

A computational and experimental study of the bending induced at a double-triple helix junction.

R. Lavery, J. Chomilier, T. Garestier, 1992, Biophysical chemistry.

Sequence analysis identifies a ras-associating (RA)-like domain in the N-termini of band 4.1/JEF domains and in the Grb7/10/14 adapter family.

J. Girault, G. Labesse, J. Wójcik, 1999, Biochemical and biophysical research communications.

Protein multiple alignments: sequence-based versus structure-based programs

Jacques Chomilier, Mathilde Carpentier, J. Chomilier, 2019, Bioinform..

Structural effects of point mutations in proteins

Jacques Chomilier, Mathilde Carpentier, J. Chomilier, 2018, Proteins.

Impact of a Point Mutation in a Protein Structure

J. Chomilier, Mathilde Carpentier, M. Carpentier, 2021 .

Molecular characterization of the major membrane skeletal protein in the ciliate Tetrahymena pyriformis suggests n-plication of an early evolutionary intermediate filament protein subdomain.

J. Mornon, J. Chomilier, P. Bouchard, 2001, Journal of cell science.

Managing and Documenting Legacy Scientific Workflows

Zoé Lacroix, Jacques Chomilier, Ruben Acuña, 2015, J. Integr. Bioinform..

Frog: a FRee Online druG 3D conformation generator

Jacques Chomilier, Pierre Tufféry, Bruno O. Villoutreix, 2007, Nucleic Acids Res..

Structural role of exons in hemoglobin

Irena Roterman-Konieczna, Jacques Chomilier, Mateusz Banach, 2013, Bio Algorithms Med Syst..

The D152H mutation found in growth hormone insensitivity syndrome impairs expression and function of human growth hormone receptor but is silent in rat receptor.

J. Wojcik, P. Kelly, J. Finidori, 1998, Journal of molecular endocrinology.

Modeling Figure/Ground Separation with Spiking Neurons

Fabio Polticelli, Marc Ebner, Ryszard Tadeusiewicz, 2015 .

A new protein folding algorithm based on hydrophobic compactness: Rigid Unconnected Secondary Structure Iterative Assembly (RUSSIA). II: Applications.

J. Mornon, J. Chomilier, K. Le Tuan, 2003, Protein engineering.

TEF 2.0: a graph-based method for decomposing protein structures into closed loops

Guillaume Postic, J. Chomilier, Julien Rey, 2018, Journal of biomolecular structure & dynamics.

RPBS: a web resource for structural bioinformatics

Jacques Chomilier, Pierre Tufféry, Bruno O. Villoutreix, 2005, Nucleic Acids Res..

Stage dependence of electronic states in potassium gic by X-ray absorption near edge polarization-dependent structure (Xaneps) measurements

D. Guérard, J. Chomilier, G. Loupias, 1988 .

From observation to simulation

I. Berezovsky, Anne Lopes, E. Eliopoulos, 2004 .

Exhaustive exploration of the conformational landscape of small cyclic peptides using a robotics approach

Juan Cortés, Marc Vaisset, Jacques Chomilier, 2018, bioRxiv.

Lithium intercalated graphite : experimental Compton profile for stage one

D. Guérard, J. Chomilier, G. Loupias, 1984 .

Measurement of the electron momentum density in LiC6: X-ray compton scattering using synchrotron radiation

D. Guérard, J. Chomilier, G. Loupias, 1985 .

Protein Multiple Alignments: Sequence-based vs Structure-based Programs

Jacques Chomilier, Mathilde Carpentier, J. Chomilier, 2018, bioRxiv.

Prediction of Chimeric Protein Fold

Zoé Lacroix, Jacques Chomilier, Nikolaos Papandreou, 2012, BIOINFORMATICS.

Protein intrachain contact prediction with most interacting residues (MIR)

Zoé Lacroix, Jacques Chomilier, Nikolaos Papandreou, 2014, Bio Algorithms Med Syst..

Contribution to the Understanding of Protein–Protein Interface and Ligand Binding Site Based on Hydrophobicity Distribution—Application to Ferredoxin I and II Cases

I. Roterman, M. Banach, J. Chomilier, 2021, Applied Sciences.

Identification of two immunogenic domains of the prion protein—PrP—which activate class II‐restricted T cells and elicit antibody responses against the native molecule

P. Metharom, J. Chomilier, C. Carnaud, 2004, Journal of leukocyte biology.

A Workflow for the Prediction of the Effects of Residue Substitution on Protein Stability

Zoé Lacroix, Jacques Chomilier, Ruben Acuña, 2013, PRIB.

Filtering Redundancies For Sequence Similarity Search Programs

J. Zagury, J. Chomilier, J. Spadoni, 2005, Journal of biomolecular structure & dynamics.

Lithium intercalated graphite: Experimental and theoretical investigations of electronic density versus stage, by Compton scattering

D. Guérard, J. Chomilier, G. Loupias, 1988 .

Lithium intercalated graphite : experimental Compton profile for stage one

D. Guérard, J. Chomilier, G. Loupias, 1984 .

Refurbishing Legacy Biological Workflows SPROUTS Case Study

Zoé Lacroix, Jacques Chomilier, Ruben Acuña, 2012, 2012 IEEE Eighth World Congress on Services.

SPROUTS: a database for the evaluation of protein stability upon point mutation

Zoé Lacroix, Jacques Chomilier, Nikolaos Papandreou, 2008, Nucleic Acids Res..

Evaluation of the Stability of Folding Nucleus upon Mutation

Zoé Lacroix, Jacques Chomilier, Mathieu Lonquety, 2008, PRIB.

Investigations of anisotropy of the electronic density in KC8 by synchroton X-ray Compton scattering

D. Guérard, J. Chomilier, G. Loupias, 1988 .

Frog: a FRee Online druG 3D conformation generator

P. Tufféry, B. Villoutreix, M. Miteva, 2007, Nucleic Acids Res..