B. van den Berg

发表

Effects of macromolecular crowding on protein folding and aggregation

C M Dobson, C. Dobson, R. Ellis, 1999, The EMBO journal.

Crystal Structure of the Long-Chain Fatty Acid Transporter FadL

T. Rapoport, W. M. Clemons, B. van den Berg, 2004, Science.

Structural Basis for Activation of an Integral Membrane Protease by Lipopolysaccharide

B. van den Berg, E. Eren, 2012, The Journal of Biological Chemistry.

An active site water network in the plasminogen activator pla from Yersinia pestis.

B. van den Berg, E. Eren, J. Goguen, 2010, Structure.

Macromolecular crowding perturbs protein refolding kinetics: implications for folding inside the cell

C. Dobson, R. Ellis, B. van den Berg, 2000, The EMBO journal.

Outer-membrane transport of aromatic hydrocarbons as a first step in biodegradation

B. van den Berg, E. M. Hearn, D. R. Patel, 2008, Proceedings of the National Academy of Sciences.

Ammonium transceptors: Novel regulators of fungal development

B. van den Berg, J. Rutherford, Julian C Rutherford, 2019, PLoS pathogens.

Crystal structure of the bacterial nucleoside transporter Tsx

B. van den Berg, Jiqing Ye, Bert van den Berg, 2004, The EMBO journal.

Small-Molecule Transport by CarO, an Abundant Eight-Stranded β-Barrel Outer Membrane Protein from Acinetobacter baumannii.

A. Baslé, B. van den Berg, E. Eren, 2015, Journal of molecular biology.

Crystal Structure of Escherichia coli CusC, the Outer Membrane Component of a Heavy Metal Efflux Pump

B. van den Berg, Rithika Kulathila, R. Kulathila, 2011, PloS one.

Insights into SusCD-mediated glycan import by a prominent gut symbiont

C. Robinson, N. Ranson, A. Mazur, 2021, Nature communications.

Insights into glycan import by a prominent gut symbiont

C. Robinson, N. Ranson, A. Mazur, 2020, bioRxiv.

Crystal structure of the Acinetobacter baumannii outer membrane protein Omp33.

A. Baslé, B. van den Berg, M. Zahn, 2018, Acta crystallographica. Section D, Structural biology.

Characterisation of the dominant oxidative folding intermediate of hen lysozyme.

C. Dobson, C. Robinson, B. van den Berg, 1999, Journal of molecular biology.

An essential role for the Zn2+ transporter ZIP7 in B cell development

J. Casanova, G. Rutter, M. van der Burg, 2019, Nature Immunology.

Structural basis for host recognition and superinfection exclusion by bacteriophage T5

S. Khalid, A. Baslé, B. van den Berg, 2022, bioRxiv.

A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193

A. Baslé, B. van den Berg, T. R. Blower, 2022, Structure.

Acquisition of ionic copper by the bacterial outer membrane protein OprC through a novel binding site

D. Bumann, A. Baslé, B. van den Berg, 2021, PLoS biology.

Gut Commensal Bacteroidetes Encode a Novel Class of Vitamin B12-Binding Proteins

A. Wright, B. van den Berg, A. Goodman, 2022, mBio.

A Multidisciplinary Approach toward Identification of Antibiotic Scaffolds for Acinetobacter baumannii.

D. Bumann, M. Winterhalter, B. van den Berg, 2019, Structure.

Article in press-uncorrected proof Review Bacterial cleanup : lateral diffusion of hydrophobic molecules through protein channel walls

B. van den Berg, Bert van den Berg, 2010 .

Chitoporin from Serratia marcescens: recombinant expression, purification and crystallization.

R. Robinson, B. van den Berg, W. Suginta, 2020, Acta crystallographica. Section F, Structural biology communications.

Outer membrane utilisomes mediate oligosaccharide uptake in gut Bacteroidetes

N. Ranson, S. Firbank, D. Bolam, 2022, bioRxiv.

A multidisciplinary approach towards identification of novel antibiotic scaffolds for Acinetobacter baumannii

D. Bumann, M. Winterhalter, B. van den Berg, 2018, bioRxiv.

Structural basis for chitin acquisition by marine Vibrio species

A. Baslé, B. van den Berg, K. Pothula, 2018, Nature Communications.

BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B12 uptake in gut Bacteroides

M. Trost, A. Baslé, B. van den Berg, 2022, bioRxiv.

Gram-negative trimeric porins have specific LPS binding sites that are essential for porin biogenesis

A. Solovyova, J. Lakey, A. Baslé, 2016, Proceedings of the National Academy of Sciences.

The antimicrobial activity and microbiological safety of stingless bee honeys from Costa Rica

L. A. Sanchez, B. van den Berg, M. L. Arias, 2014 .

Porins and small-molecule translocation across the outer membrane of Gram-negative bacteria

J. Naismith, M. Winterhalter, J. Pagés, 2019, Nature Reviews Microbiology.

Toward Understanding the Outer Membrane Uptake of Small Molecules by Pseudomonas aeruginosa*

S. Khalid, L. Movileanu, B. van den Berg, 2013, The Journal of Biological Chemistry.

Protein translocation by the Sec61/SecY channel.

T. Rapoport, B. van den Berg, Andrew R. Osborne, 2005, Annual review of cell and developmental biology.

Structural basis for maintenance of bacterial outer membrane lipid asymmetry

D. Bumann, A. Baslé, B. van den Berg, 2017, Nature Microbiology.

Quasithermodynamic Contributions to the Fluctuations of a Protein Nanopore

L. Movileanu, B. van den Berg, Belete R. Cheneke, 2014, ACS chemical biology.

Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis

J. Enghild, N. Ranson, S. Rawson, 2020, Nature Microbiology.

TonB-dependent transport by the gut microbiota: novel aspects of an old problem.

D. Bolam, B. van den Berg, 2018, Current opinion in structural biology.

Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.

A. Baslé, M. Winterhalter, B. van den Berg, 2016, Structure.

Crystal structure of the monomeric porin OmpG.

B. van den Berg, Bert van den Berg, Gowtham V Subbarao, 2006, Journal of molecular biology.

Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion

S. Khalid, A. Baslé, B. van den Berg, 2020, Nature Communications.

Getting Drugs into Gram-Negative Bacteria: Rational Rules for Permeation through General Porins.

M. Page, J. Naismith, M. Winterhalter, 2018, ACS infectious diseases.

NAG‐thiazoline is a potent inhibitor of the Vibrio campbellii GH20 β‐N‐Acetylglucosaminidase

B. van den Berg, K. Stubbs, W. Suginta, 2020, The FEBS journal.

Porins and small-molecule translocation across the outer membrane of Gram-negative bacteria

J. Naismith, M. Winterhalter, J. Pagés, 2019, Nature Reviews Microbiology.

Structural Basis for Outer Membrane Sugar Uptake in Pseudomonads*

B. van den Berg, 2012, The Journal of Biological Chemistry.

Structure, Dynamics, and Substrate Specificity of the OprO Porin from Pseudomonas aeruginosa.

R. Benz, Iván Bárcena-Uribarri, B. van den Berg, 2015, Biophysical journal.

Pulmonary dysfunction during one-lung ventilation caused by HLA-specific antibodies against leukocytes.

B. van den Berg, A. D. de Wolf, A. Van Zundert, 1987, Anesthesia and analgesia.

The oxidative refolding of hen lysozyme and its catalysis by protein disulfide isomerase

C. Dobson, C. Robinson, B. van den Berg, 1999, The EMBO journal.

Cation selectivity is a conserved feature in the OccD subfamily of Pseudomonas aeruginosa.

A. Wolfe, L. Movileanu, B. van den Berg, 2012, Biochimica et biophysica acta.

OccK channels from Pseudomonas aeruginosa exhibit diverse single-channel electrical signatures but conserved anion selectivity.

L. Movileanu, B. van den Berg, E. Eren, 2012, Biochemistry.

Substrate Specificity within a Family of Outer Membrane Carboxylate Channels

L. Movileanu, B. van den Berg, E. Eren, 2012, PLoS biology.

Analysis of gating transitions among the three major open states of the OpdK channel.

L. Movileanu, B. van den Berg, Belete R. Cheneke, 2011, Biochemistry.

Nutrient and Stress Sensing in Pathogenic Yeasts

J. Heitman, Y. Bahn, B. van den Berg, 2019, Front. Microbiol..

The Outer Membrane Protein OmpW Forms an Eight-stranded β-Barrel with a Hydrophobic Channel*

L. Tamm, B. van den Berg, H. Hong, 2006, Journal of Biological Chemistry.

Structural basis for silicic acid uptake by higher plants.

C. Robinson, S. Khalid, A. Baslé, 2021, Journal of molecular biology.

Structural basis for silicon uptake by higher plants

C. Robinson, S. Khalid, A. Baslé, 2021, bioRxiv.

Structural basis for Mep2 ammonium transceptor activation by phosphorylation

Anupama Chembath, S. Khalid, A. Baslé, 2016, Nature Communications.

Structural basis for membrane recruitment and allosteric activation of cytohesin family Arf GTPase exchange factors

D. Lambright, B. van den Berg, Andrew W. Malaby, 2013, Proceedings of the National Academy of Sciences.

Getting Drugs through Small Pores: Exploiting the Porins Pathway in Pseudomonas aeruginosa.

D. Bumann, M. Winterhalter, B. van den Berg, 2018, ACS infectious diseases.

Dynamic oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis

J. Enghild, N. Ranson, S. Rawson, 2019, bioRxiv.

Ligand-gated diffusion across the bacterial outer membrane

B. van den Berg, E. M. Hearn, D. R. Patel, 2011, Proceedings of the National Academy of Sciences.

Outer-membrane translocation of bulky small molecules by passive diffusion

M. Winterhalter, B. van den Berg, U. Kleinekathöfer, 2015, Proceedings of the National Academy of Sciences.

Acquisition of ionic copper by a bacterial outer membrane protein

D. Bumann, A. Baslé, B. van den Berg, 2020, bioRxiv.

An outer membrane protein undergoes enthalpy- and entropy-driven transitions.

L. Movileanu, B. van den Berg, Belete R. Cheneke, 2012, Biochemistry.

Incorporation of an unnatural amino acid in the active site of porcine pancreatic phospholipase A2. Substitution of histidine by 1,2,4-triazole-3-alanine yields an enzyme with high activity at acidic pH.

R C Cox, N. Dekker, B. van den Berg, 1996, Protein engineering.

Role of Electroosmosis in the Permeation of Neutral Molecules: CymA and Cyclodextrin as an Example.

M. Winterhalter, B. van den Berg, U. Kleinekathöfer, 2016, Biophysical journal.

Going Forward Laterally: Transmembrane Passage of Hydrophobic Molecules through Protein Channel Walls

B. van den Berg, 2010, Chembiochem : a European journal of chemical biology.

Modeling of Specific Lipopolysaccharide Binding Sites on a Gram-Negative Porin.

Dhilon S. Patel, W. Im, Jumin Lee, 2019, The journal of physical chemistry. B.

Unusual Constriction Zones in the Major Porins OmpU and OmpT from Vibrio cholerae.

A. Baslé, M. Winterhalter, B. van den Berg, 2018, Structure.

Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marine Vibrio bacteria

B. van den Berg, W. Suginta, T. Fukamizo, 2018, The Journal of Biological Chemistry.

The FadL family: unusual transporters for unusual substrates.

B. van den Berg, 2005, Current opinion in structural biology.

Crystal structure of the outer membrane protein OpdK from Pseudomonas aeruginosa.

Shyamasri Biswas, L. Movileanu, B. van den Berg, 2008, Structure.

The Crystal Structure of OprG from Pseudomonas aeruginosa, a Potential Channel for Transport of Hydrophobic Molecules across the Outer Membrane

B. van den Berg, D. R. Patel, D. Touw, 2010, PloS one.

An essential role for the Zn2+ transporter ZIP7 in B cell development

J. Casanova, G. Rutter, M. van der Burg, 2019, Nature Immunology.

Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes

N. Ranson, S. Firbank, D. Bolam, 2023, Nature.

Crystal structure of the Acinetobacter baumannii outer membrane protein Omp33

A. Baslé, B. van den Berg, M. Zahn, 2018 .

Structural basis for host recognition and superinfection exclusion by bacteriophage T5

Astrid F. Brandner, S. Khalid, A. Baslé, 2022, Proceedings of the National Academy of Sciences.

BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B12 uptake in gut Bacteroides

A. Baslé, B. van den Berg, U. Kleinekathöfer, 2023, Nature communications.

TonB-Dependent Transport Across the Bacterial Outer Membrane.

B. van den Berg, Augustinas Silale, 2023, Annual review of microbiology.

Bacterial cleanup: lateral diffusion of hydrophobic molecules through protein channel walls.

B. van den Berg, 2010, Biomolecular Concepts.

Role of Electroosmosis in the Permeation of Neutral Molecules: CymA and Cyclodextrin as an Example.

M. Winterhalter, B. van den Berg, U. Kleinekathöfer, 2016, Biophysical journal.

Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes

S. Khalid, S. Gribaldo, B. van den Berg, 2023, Nature communications.

Structural basis of iron piracy by a prominent human gut symbiont

B. van den Berg, Augustinas Silale, Arnaud Baslé, 2024, bioRxiv.